Prupe.4G033100_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
1547369 .. 1547776
408 bp
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UTR
Exon/CDS
Intron
Prupe.4G033100.1

Sequence Viewer

Length: 360 bp
ATGCCTGCAGCTGCTATACCATCATCTTTGACAACAAAGTTTCCAGTGTCTGAAAGAACTGCAGCTGAAGTATTAGATGGCACTGAAATATTGGTTGACCAAACAGAATTCTGTTTGCCATCTACAAGCTCCAAATTCCCACTGCTGCTAATTGTCAAACTAGCCAAGGTGTCTGAAGCTGCAATAGGATTTTCTCTGTTGGCCACCCATACAACTTTACGAGGAAATATATCCTTATGCCATATCCCCACATACTTATTAGCCGAGTTATTAGGACTGAAGAAACCCAGTTCAAAAATGTGGCCAGGAGAGACAAGGTTTTGTCCCTGTGATAATGGTTGTGAAGGAGTTATGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.73

Weight (kDa)

6.07

Isoelectric Point (pI)

53.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029039)

Species Orthologous Gene IDs
prunus_persica Prupe.4G032800_v2.0.a1 Prupe.4G033100_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 201, 302
AcsI RAATTY 2 cut(s) 107, 134
AcuI CTGAAG 3 cut(s) 87, 195, 299
AgsI TTSAA 1 cut(s) 294
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 4 cut(s) 11, 65, 129, 179
AluI AGCT 4 cut(s) 11, 65, 129, 179
Alw26I GTCTC 1 cut(s) 305
AlwNI CAGNNNCTG 1 cut(s) 50
AoxI GGCC 2 cut(s) 201, 302
ApeKI GCWGC 5 cut(s) 8, 11, 62, 145, 179
ApoI RAATTY 2 cut(s) 107, 134
BalI TGGCCA 2 cut(s) 203, 304
BbvI GCAGC 4 cut(s) 20, 74, 132, 166
BccI CCATC 3 cut(s) 28, 71, 127
BciT130I CCWGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 2 cut(s) 6, 60
BisI GCNGC 5 cut(s) 9, 12, 63, 146, 180
BlsI GCNGC 5 cut(s) 10, 13, 64, 147, 181
Bme1390I CCNGG 1 cut(s) 306
BmrFI CCNGG 1 cut(s) 306
BmrI ACTGGG 1 cut(s) 282
BmuI ACTGGG 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 165
Bse1I ACTGG 2 cut(s) 44, 288
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 165
BseNI ACTGG 2 cut(s) 44, 288
BseXI GCAGC 4 cut(s) 20, 74, 132, 166
BshFI GGCC 2 cut(s) 203, 304
BslFI GGGAC 1 cut(s) 309
BsmAI GTCTC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 309
BsnI GGCC 2 cut(s) 203, 304
BspANI GGCC 2 cut(s) 203, 304
BspMAI CTGCAG 2 cut(s) 10, 64
BsrI ACTGG 2 cut(s) 44, 288
BssECI CCNNGG 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 305
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 2 cut(s) 6, 60
BstV1I GCAGC 4 cut(s) 20, 74, 132, 166
BsuRI GGCC 2 cut(s) 203, 304
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 3 cut(s) 51, 81, 140
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 50
CviJI RGCY 8 cut(s) 11, 65, 129, 164, 179, 203, 263, 304
CviKI_1 RGCY 8 cut(s) 11, 65, 129, 164, 179, 203, 263, 304
EaeI YGGCCR 2 cut(s) 201, 302
Eco130I CCWWGG 1 cut(s) 165
Eco57I CTGAAG 3 cut(s) 87, 195, 299
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
FaiI YATR 8 cut(s) 17, 210, 230, 238, 243, 253, 353, 358
FaqI GGGAC 1 cut(s) 309
Fnu4HI GCNGC 5 cut(s) 9, 12, 63, 146, 180
Fsp4HI GCNGC 5 cut(s) 9, 12, 63, 146, 180
FspBI CTAG 1 cut(s) 161
GluI GCNGC 5 cut(s) 9, 12, 63, 146, 180
HaeIII GGCC 2 cut(s) 203, 304
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 52, 175
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 338
HpyCH4V TGCA 3 cut(s) 8, 62, 182
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 6 cut(s) 18, 57, 291, 301, 318, 340
Lsp1109I GCAGC 4 cut(s) 20, 74, 132, 166
MaeI CTAG 1 cut(s) 161
MboII GAAGA 1 cut(s) 292
MlsI TGGCCA 2 cut(s) 203, 304
MluCI AATT 3 cut(s) 107, 134, 150
MluNI TGGCCA 2 cut(s) 203, 304
MnlI CCTC 1 cut(s) 215
Mox20I TGGCCA 2 cut(s) 203, 304
MscI TGGCCA 2 cut(s) 203, 304
Msp20I TGGCCA 2 cut(s) 203, 304
MspA1I CMGCKG 2 cut(s) 11, 65
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
NmeAIII GCCGAG 1 cut(s) 289
PkrI GCNGC 5 cut(s) 10, 13, 64, 147, 181
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PstI CTGCAG 2 cut(s) 10, 64
PstNI CAGNNNCTG 1 cut(s) 50
PvuII CAGCTG 2 cut(s) 11, 65
SatI GCNGC 5 cut(s) 9, 12, 63, 146, 180
ScrFI CCNGG 1 cut(s) 306
SetI ASST 6 cut(s) 13, 67, 131, 171, 181, 320
SfcI CTRYAG 2 cut(s) 6, 60
Sse9I AATT 3 cut(s) 107, 134, 150
SspI AATATT 1 cut(s) 90
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 1 cut(s) 165
TasI AATT 3 cut(s) 107, 134, 150
TscAI CASTG 3 cut(s) 51, 88, 147
TseI GCWGC 5 cut(s) 8, 11, 62, 145, 179
TspRI CASTG 3 cut(s) 51, 88, 147
XapI RAATTY 2 cut(s) 107, 134
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.