Prupe.4G093800_v2.0.a1

nuclease HARBI1

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
4727954 .. 4729481
1528 bp
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UTR
Exon/CDS
Intron
Prupe.4G093800.1

Sequence Viewer

Length: 117 bp
ATGGCGCCTCCCGAGAAATCAAAGAAAAGCAAGAAAGATAGGAAATTGAAGAAAAACTTAAGCTTGGTTCCAGTCGAGCCTAAAGCTGCAGACTCTGACTGGTTGCAATATCCGTGA

Protein Analysis

39

Amino Acids

4.35

Weight (kDa)

9.82

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029038)

Species Orthologous Gene IDs
prunus_persica Prupe.3G033800_v2.0.a1 Prupe.4G093800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AcyI GRCGYC 1 cut(s) 5
AflII CTTAAG 1 cut(s) 58
AgsI TTSAA 1 cut(s) 49
AluBI AGCT 2 cut(s) 63, 86
AluI AGCT 2 cut(s) 63, 86
AlwNI CAGNNNCTG 1 cut(s) 95
Ama87I CYCGRG 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 86
AspLEI GCGC 1 cut(s) 7
AvaI CYCGRG 1 cut(s) 11
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 73
BfmI CTRYAG 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 58
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 11
BmiI GGNNCC 2 cut(s) 6, 69
BsaHI GRCGYC 1 cut(s) 5
Bse1I ACTGG 2 cut(s) 71, 104
BseNI ACTGG 2 cut(s) 71, 104
BseXI GCAGC 1 cut(s) 73
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 11
BspLI GGNNCC 2 cut(s) 6, 69
BspMAI CTGCAG 1 cut(s) 91
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 58
BsrI ACTGG 2 cut(s) 71, 104
BssNI GRCGYC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 73
CaiI CAGNNNCTG 1 cut(s) 95
CfoI GCGC 1 cut(s) 7
CviJI RGCY 3 cut(s) 63, 79, 86
CviKI_1 RGCY 3 cut(s) 63, 79, 86
DinI GGCGCC 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 11
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FalI AAGNNNNNCTT 2 cut(s) 41, 73
Fnu4HI GCNGC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 87
FspEI CC 8 cut(s) 21, 24, 25, 25, 50, 84, 85, 93
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 87
HaeII RGCGCY 1 cut(s) 8
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 11
HpyCH4V TGCA 2 cut(s) 89, 106
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
LpnPI CCDG 2 cut(s) 84, 85
Lsp1109I GCAGC 1 cut(s) 73
MboII GAAGA 1 cut(s) 61
MluCI AATT 1 cut(s) 44
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 1 cut(s) 18
MseI TTAA 1 cut(s) 59
MspCI CTTAAG 1 cut(s) 58
NarI GGCGCC 1 cut(s) 5
NlaIV GGNNCC 2 cut(s) 6, 69
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 1 cut(s) 86
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 86
PspN4I GGNNCC 2 cut(s) 6, 69
PstI CTGCAG 1 cut(s) 91
PstNI CAGNNNCTG 1 cut(s) 95
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 1 cut(s) 87
SchI GAGTC 1 cut(s) 86
SetI ASST 2 cut(s) 65, 88
SfcI CTRYAG 1 cut(s) 87
SfoI GGCGCC 1 cut(s) 6
SgeI CNNG 7 cut(s) 23, 25, 43, 76, 83, 88, 112
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 1 cut(s) 44
SspDI GGCGCC 1 cut(s) 4
TaqI TCGA 1 cut(s) 75
TasI AATT 1 cut(s) 44
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TseI GCWGC 1 cut(s) 86
TspGWI ACGGA 1 cut(s) 102
Vha464I CTTAAG 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.