Prupe.4G106500_v2.0.a1

Protein ROOT HAIR DEFECTIVE 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016952
Physical Location & Seq
Reverse (-)
5528126 .. 5546662
18537 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G106500.1

Sequence Viewer

Length: 3252 bp
ATGGAGGAAGATTGCTGCGCCACGCAACTCATCTATGGAGATGGTAAGTTTAATGCTGGTGGGCTCGACAGGTTCGTCAAGGAAGTGAAGCTTGCTGAGTGTGGAATCTCCTATGGTGTTGTAGCTATCGTGGGTCCTCAGAGCAGCGGGAAGAGCGCTTTACAGAACCATCTGTTCACTACTAAGTTTAAGGAGATGAATGCAAACAGTGGAAGGAGCCAAACTACGAAGGGTATATGGATAGCCAAGTGTGTTGGCATTGAGCCTTGCACGATTGCCATGGATTTGGAGGGTACTGATGGCAGGGAGAGAGGCCAGGATGATACATTCAAGAAGCAAAGCACCCTATTTGTTCTGGCAGTTTCAGACATTTTGCTGATAAATATGTCTCTTGACGGGCAAGACAAACCTTTTCTTGAAACATTTTTTCAGGTTGTGATGCGCTTTGGCATCCCCCGTAAAACGACGTTACTGTTTGTAATACACGATAATTCAAAGATATGGAATGGAGTTCCAAAGCCCCAAGCCCATAAAAGTACCCGCTTCAGTGATTTCTTTAGTGAAGAAGTAGTTGTTATGTCTAGTTATGAAGAGAAGGAGAAGTTTAAGGAGGAGGTTGCTCAACTGAGGCAGCGGTTGTCTCCAGGTATGTTGTTTGCTGGTTATAGAAGGGGTCTTGTCCCTGCCTCAGGATTTTCCTTTAGTGCACAACAGATTTGGAAAGTAATCAAAGAGAACAAGGACCTGGATCTTCCCGCTCACAAGGTTATGGTTGCCAATGTTCGGTGTGAAGAGATTGCAAACCATATATTCAATCAATTGATATATGATAAGGTATGTACTCATTTATCTCCATTTTTGAGATGCTTGTATAATATCAGGAAGGGTTGGTTGGCATTGAAAGAAGCTGTCCAAACTGGTCCTGTACAAGGTTTTGGTAAAAGGCTCAGCTCCATTCTAGGCACCTATCTTTCTAAATATGACATAGAGGCCATCTACTTTGACGGAGGTGCAAGGAACTCAAAACGACAACTTTTGGAGTCAAAAGCATTGGATTTTGTTTACCCTGCATACACGACCATGTTGGGACATGTACGTTCCAAAGCGCTTGAAGATTTTAAAGTGAGGCTGGAGCAATCATTAAACAAAGCAAGAGGATTTGCTACATATGTTCGTATCTGTACTCACTCTTCCATGCTTGAGTTTGACAAAGGATGTGCAGATGCTGCCGTAATACAAGCTAATTGGGATGCTTCAAGAGTTCGCGAAAAACTTCAACGTGATATGGATGCACATGCATCATCCGTTTGTAGTGCAAAGTTGTCAGAATTGAATGTCAACTATGAGCAACAACTGTCTGCATCTTTAATTGGACCAGTAAAGACTCTACTTGAAACTGGTGGAAAAGACACTTGGGCTTCAATAAGAAAACTTCTTAATCGTGAAACTGAAGTTGCTATATCAGAGTTTTCAACTGTAGTTGCCGATTTTGAGTTGGACGAAGCAACAATTGCCGAAATGTTGCAACATTTAAGGGATTACTCAAGGAATGTGGTGGAGAAAAAAGCAAGGGAAGAGGCTACGAAAATTATGATCCACATGAAGGATCGGTTTTCCACAGTCTTCAATTATGACAGCGATTCAACGCTTCGGGTTTGGACTGGTAAAGAAGACATTGCAAGTATTACCAAGGATGCTCGCTCTGCGTCTATGAAGCTTTTGTCCGTCATGGCTGCCATCCGCTTGGATGAGAAGCCAGATCATATTGAAAAAGTTCTCTTTTCCTCTCTAATGGATGGAGCTGTTACTGTTTCATCTTCACAAGATAGGGAAATCGGAGCCTCTGTAGACCCTCTCGCCTCAAGCAATTGGGAAGAGGTTTCTTCAAAGAATATCTTAATTACACCAGTGCAGTGCCAGTCCTTGTGGAGACAGTTCATAGCAGAGACTGAGAATAGTGTCACTCAAGCTATTTCAGCACATGTTATGGCTGCTACTGCTCGGTGTGAAGAGATAGCCAACCAGAAATTCAGTCAATTGATCCTCGATGAGGATTGGTTGGCATTGGAAGAAGCTGTCCAAATTGGCCCCGTACAAGGTTTTGGTAAAAGGCTCAGCTCCATTTTAAGCACCTATCTTTCTAAATATGACACAGAGGCCACCATCTACTTTGACGAAGGTGCAAGGAACTCAAAACGACAACTGTTGGAGTCAAAAGCGTTGGATTTTGTTTACCCTGCATACACGACCATGCTGGGACATGTACATTCTAAAGCGCTTGAAGATTTTAAAGTGAGACTGGAACAATCGTTAAACAAAGGAGAAGGATTTACTTTATCTGTTCGTACCTGTACTCAGTCTTCTATACTTGAGTTTGACAAAGGATGTGCAGATGTTGCCATACAACAAGCTAATTGGGATGCTTCAAGAGTTCGCGAAAAACTTCAACGTGATATAGATGCACATGCATCATCCATTTGTAGTGCAAAGTTGTTAGAATTGAATTTCAATTATGAGAGACAACTGTCTGCATCTTTAACTGGACCAGTAGAGGCTCTACTTGAAACTGGTGGAAAAGACACTTGGGGTTCAATAAGAAAACTACTTAATCGTGAAACTGTAGTTGCAATATCAAAGTTTTCAACTGCAATTTCCGATTTTGAGTTGGACAAAGAAACAATTGCCAAAATGTTGCAACATTTAAGGGATTACTCAAGGAATGTGGTGGAGAAAGTTGCAAGAGAAGAGGCCACAAAAATTATGATCCACATGAAGGATCGGTTTTTCGGAGTCTTCAATTGTGACAGTGATTCAATGCCTCGGGTTTGGACTGAGAAAGAAGACATCAGAAGTATTACCAAGGATGCTCGCTCTGCAGCTTTGAACCTTTTGTCAATCATGGCTGCCATCCGCTTGGATGAGAAGTCAGATAATATTGAAAAAGTTCTCTTTTCTTCTCTGATGGATGAAACTGTTACTGTTTCATCTTCACAAGATAGGAGAATAGGAGCTTCTGCATACCTTCTTGCCTCAAACACCTGGGAAGAGGTTTCTTCAAATGATACCTTAATTACTCCAGCGCAGTGCAAGTCCTTGTGGGGAGAGTTCAAAACAGAGACTGAGTTTAGTGTCACTGAAGCTATTTTAGCACAGGAGGCTTACAAACAGAGTAACAACTGGTTGCCTCCTCCGTGGGCTACTATGGTGATTGTCGTTCATGGTTTCAACCAATTTATGCACCTTTTAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

1084

Amino Acids

121.61

Weight (kDa)

6.03

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 962
AccBSI CCGCTC 1 cut(s) 758
AccI GTMKAC 1 cut(s) 1848
AccII CGCG 2 cut(s) 1266, 2436
AciI CCGC 6 cut(s) 147, 541, 634, 756, 1741, 2911
AclWI GGATC 6 cut(s) 756, 1588, 1614, 2035, 2758, 2784
AcsI RAATTY 2 cut(s) 2027, 2503
AcuI CTGAAG 3 cut(s) 529, 1470, 3156
AfeI AGCGCT 3 cut(s) 157, 1107, 2277
AfiI CCNNNNNNNGG 7 cut(s) 689, 783, 929, 1603, 2050, 2096, 2773
AflIII ACRYGT 3 cut(s) 1090, 1981, 2260
AjnI CCWGG 4 cut(s) 315, 643, 744, 3038
AjuI GAANNNNNNNTTGG 8 cut(s) 875, 907, 1396, 1428, 2012, 2044, 2566, 2598
Alw21I GWGCWC 1 cut(s) 709
Alw26I GTCTC 7 cut(s) 393, 645, 1924, 1940, 2290, 2512, 3110
Alw44I GTGCAC 1 cut(s) 705
AlwI GGATC 6 cut(s) 756, 1588, 1614, 2035, 2758, 2784
AlwNI CAGNNNCTG 3 cut(s) 1226, 1949, 3119
Ama87I CYCGRG 1 cut(s) 2820
Aor51HI AGCGCT 3 cut(s) 157, 1107, 2277
AoxI GGCC 5 cut(s) 313, 990, 2086, 2157, 2748
ApaLI GTGCAC 1 cut(s) 705
ApeKI GCWGC 8 cut(s) 15, 144, 631, 1226, 1733, 1991, 2876, 2903
ApoI RAATTY 2 cut(s) 2027, 2503
Asp700I GAANNNNTTC 4 cut(s) 1272, 1773, 2442, 2943
AspLEI GCGC 6 cut(s) 20, 158, 444, 1108, 2278, 3082
AspS9I GGNCC 6 cut(s) 134, 742, 920, 1373, 2087, 2543
AsuHPI GGTGA 1 cut(s) 3217
AvaI CYCGRG 1 cut(s) 2820
AvaII GGWCC 5 cut(s) 134, 742, 920, 1373, 2543
AxyI CCTNAGG 1 cut(s) 688
BaeGI GKGCMC 1 cut(s) 709
BanI GGYRCC 1 cut(s) 962
BanII GRGCYC 1 cut(s) 66
BarI GAAGNNNNNNTAC 4 cut(s) 1174, 1206, 2344, 2376
BbsI GAAGAC 5 cut(s) 1615, 1677, 2352, 2785, 2847
Bbv12I GWGCWC 1 cut(s) 709
BbvI GCAGC 8 cut(s) 2, 156, 643, 1213, 1720, 1978, 2888, 2890
BccI CCATC 9 cut(s) 35, 177, 293, 1001, 1745, 1790, 2171, 2915, 2956
BceAI ACGGC 1 cut(s) 1214
BciT130I CCWGG 4 cut(s) 317, 645, 746, 3040
BcoDI GTCTC 7 cut(s) 393, 645, 1924, 1940, 2290, 2512, 3110
BfaI CTAG 2 cut(s) 582, 959
BfmI CTRYAG 4 cut(s) 1476, 1845, 2619, 2874
BfoI RGCGCY 3 cut(s) 159, 1109, 2279
BisI GCNGC 8 cut(s) 16, 145, 632, 1227, 1734, 1992, 2877, 2904
BlpI GCTNAGC 2 cut(s) 947, 2114
BlsI GCNGC 8 cut(s) 17, 146, 633, 1228, 1735, 1993, 2878, 2905
Bme1390I CCNGG 4 cut(s) 317, 645, 746, 3040
Bme18I GGWCC 5 cut(s) 134, 742, 920, 1373, 2543
BmeT110I CYCGRG 1 cut(s) 2820
BmgT120I GGNCC 6 cut(s) 134, 742, 920, 1373, 2087, 2543
BmiI GGNNCC 5 cut(s) 135, 218, 964, 1840, 2089
BmrFI CCNGG 4 cut(s) 317, 645, 746, 3040
BoxI GACNNNNGTC 1 cut(s) 2524
BpiI GAAGAC 5 cut(s) 1615, 1677, 2352, 2785, 2847
BpmI CTGGAG 3 cut(s) 627, 1151, 3060
Bpu1102I GCTNAGC 2 cut(s) 947, 2114
BpuEI CTTGAG 6 cut(s) 1220, 1528, 1846, 1950, 2390, 2698
BsaJI CCNNGG 6 cut(s) 279, 1689, 2819, 2859, 3039, 3191
BsaXI ACNNNNNCTCC 2 cut(s) 1830, 1860
Bsc4I CCNNNNNNNGG 7 cut(s) 689, 783, 929, 1603, 2050, 2096, 2773
Bse21I CCTNAGG 1 cut(s) 688
Bse3DI GCAATG 1 cut(s) 1674
BseBI CCWGG 4 cut(s) 317, 645, 746, 3040
BseDI CCNNGG 6 cut(s) 279, 1689, 2819, 2859, 3039, 3191
BseLI CCNNNNNNNGG 7 cut(s) 689, 783, 929, 1603, 2050, 2096, 2773
BseMI GCAATG 1 cut(s) 1674
BseRI GAGGAG 2 cut(s) 626, 3177
BseSI GKGCMC 1 cut(s) 709
BseXI GCAGC 8 cut(s) 2, 156, 643, 1213, 1720, 1978, 2888, 2890
BseYI CCCAGC 1 cut(s) 2254
BsgI GTGCAG 3 cut(s) 1239, 1931, 2409
Bsh1236I CGCG 2 cut(s) 1266, 2436
BshFI GGCC 5 cut(s) 315, 992, 2088, 2159, 2750
BshNI GGYRCC 1 cut(s) 962
BsiHKAI GWGCWC 1 cut(s) 709
BsiHKCI CYCGRG 1 cut(s) 2820
BslFI GGGAC 3 cut(s) 665, 1101, 2271
BslI CCNNNNNNNGG 7 cut(s) 689, 783, 929, 1603, 2050, 2096, 2773
BsmAI GTCTC 7 cut(s) 393, 645, 1924, 1940, 2290, 2512, 3110
BsmFI GGGAC 3 cut(s) 665, 1101, 2271
BsmI GAATGC 1 cut(s) 205
BsnI GGCC 5 cut(s) 315, 992, 2088, 2159, 2750
BsoBI CYCGRG 1 cut(s) 2820
Bsp1286I GDGCHC 2 cut(s) 66, 709
Bsp1407I TGTACA 2 cut(s) 925, 2263
Bsp143I GATC 7 cut(s) 748, 1593, 1606, 1759, 2040, 2763, 2776
Bsp1720I GCTNAGC 2 cut(s) 947, 2114
Bsp19I CCATGG 1 cut(s) 279
Bsp68I TCGCGA 2 cut(s) 1266, 2436
BspACI CCGC 6 cut(s) 147, 541, 634, 756, 1741, 2911
BspANI GGCC 5 cut(s) 315, 992, 2088, 2159, 2750
BspFNI CGCG 2 cut(s) 1266, 2436
BspLI GGNNCC 5 cut(s) 135, 218, 964, 1840, 2089
BspMAI CTGCAG 1 cut(s) 2878
BspPI GGATC 6 cut(s) 756, 1588, 1614, 2035, 2758, 2784
BspQI GCTCTTC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 962
BsrBI CCGCTC 1 cut(s) 758
BsrDI GCAATG 1 cut(s) 1674
BsrGI TGTACA 2 cut(s) 925, 2263
BssECI CCNNGG 6 cut(s) 279, 1689, 2819, 2859, 3039, 3191
BssMI GATC 7 cut(s) 748, 1593, 1606, 1759, 2040, 2763, 2776
BssT1I CCWWGG 3 cut(s) 279, 1689, 2859
Bst2UI CCWGG 4 cut(s) 317, 645, 746, 3040
Bst6I CTCTTC 9 cut(s) 146, 585, 786, 1195, 1569, 1869, 2004, 2739, 3039
BstAPI GCANNNNNTGC 3 cut(s) 1226, 1511, 2396
BstAUI TGTACA 2 cut(s) 925, 2263
BstC8I GCNNGC 3 cut(s) 93, 1699, 2869
BstDSI CCRYGG 2 cut(s) 279, 3191
BstENI CCTNNNNNAGG 3 cut(s) 687, 927, 2048
BstFNI CGCG 2 cut(s) 1266, 2436
BstH2I RGCGCY 3 cut(s) 159, 1109, 2279
BstHHI GCGC 6 cut(s) 20, 158, 444, 1108, 2278, 3082
BstKTI GATC 7 cut(s) 751, 1596, 1609, 1762, 2043, 2766, 2779
BstMAI GTCTC 7 cut(s) 393, 645, 1924, 1940, 2290, 2512, 3110
BstMBI GATC 7 cut(s) 748, 1593, 1606, 1759, 2040, 2763, 2776
BstNI CCWGG 4 cut(s) 317, 645, 746, 3040
BstNSI RCATGY 5 cut(s) 1094, 1298, 1985, 2264, 2468
BstPAI GACNNNNGTC 1 cut(s) 2524
BstSCI CCNGG 4 cut(s) 315, 643, 744, 3038
BstSFI CTRYAG 4 cut(s) 1476, 1845, 2619, 2874
BstSLI GKGCMC 1 cut(s) 709
BstUI CGCG 2 cut(s) 1266, 2436
BstV1I GCAGC 8 cut(s) 2, 156, 643, 1213, 1720, 1978, 2888, 2890
BstV2I GAAGAC 5 cut(s) 1615, 1677, 2352, 2785, 2847
BstX2I RGATCY 1 cut(s) 748
BstXI CCANNNNNNTGG 3 cut(s) 286, 1744, 2914
BstYI RGATCY 1 cut(s) 748
Bsu36I CCTNAGG 1 cut(s) 688
BsuRI GGCC 5 cut(s) 315, 992, 2088, 2159, 2750
BtgI CCRYGG 2 cut(s) 279, 3191
BtsI GCAGTG 2 cut(s) 1919, 3089
BtsIMutI CAGTG 7 cut(s) 214, 553, 1914, 1919, 2812, 3089, 3132
BtuMI TCGCGA 2 cut(s) 1266, 2436
Cac8I GCNNGC 3 cut(s) 93, 1699, 2869
CaiI CAGNNNCTG 3 cut(s) 1226, 1949, 3119
CfoI GCGC 6 cut(s) 20, 158, 444, 1108, 2278, 3082
Cfr13I GGNCC 6 cut(s) 134, 742, 920, 1373, 2087, 2543
CseI GACGC 1 cut(s) 1695
CspCI CAANNNNNGTGG 4 cut(s) 1533, 1568, 2703, 2738
DpnI GATC 7 cut(s) 750, 1595, 1608, 1761, 2042, 2765, 2778
DpnII GATC 7 cut(s) 748, 1593, 1606, 1759, 2040, 2763, 2776
DraI TTTAAA 3 cut(s) 1120, 2290, 3246
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
Eam1104I CTCTTC 9 cut(s) 146, 585, 786, 1195, 1569, 1869, 2004, 2739, 3039
EarI CTCTTC 9 cut(s) 146, 585, 786, 1195, 1569, 1869, 2004, 2739, 3039
Eco130I CCWWGG 3 cut(s) 279, 1689, 2859
Eco24I GRGCYC 1 cut(s) 66
Eco47I GGWCC 5 cut(s) 134, 742, 920, 1373, 2543
Eco47III AGCGCT 3 cut(s) 157, 1107, 2277
Eco57I CTGAAG 3 cut(s) 529, 1470, 3156
Eco81I CCTNAGG 1 cut(s) 688
Eco88I CYCGRG 1 cut(s) 2820
EcoNI CCTNNNNNAGG 3 cut(s) 687, 927, 2048
EcoO109I RGGNCCY 2 cut(s) 134, 742
EcoRII CCWGG 4 cut(s) 315, 643, 744, 3038
EcoT14I CCWWGG 3 cut(s) 279, 1689, 2859
EcoT22I ATGCAT 2 cut(s) 1300, 2470
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 3 cut(s) 279, 1689, 2859
FalI AAGNNNNNCTT 4 cut(s) 75, 107, 1880, 1912
FaqI GGGAC 3 cut(s) 665, 1101, 2271
FauI CCCGC 3 cut(s) 140, 548, 763
FauNDI CATATG 1 cut(s) 1168
FblI GTMKAC 1 cut(s) 1848
Fnu4HI GCNGC 8 cut(s) 16, 145, 632, 1227, 1734, 1992, 2877, 2904
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 8 cut(s) 16, 145, 632, 1227, 1734, 1992, 2877, 2904
FspBI CTAG 2 cut(s) 582, 959
GlaI GCGC 6 cut(s) 19, 157, 443, 1107, 2277, 3081
GluI GCNGC 8 cut(s) 16, 145, 632, 1227, 1734, 1992, 2877, 2904
GsaI CCCAGC 1 cut(s) 2258
GsuI CTGGAG 3 cut(s) 627, 1151, 3060
HaeII RGCGCY 3 cut(s) 159, 1109, 2279
HaeIII GGCC 5 cut(s) 315, 992, 2088, 2159, 2750
HgaI GACGC 1 cut(s) 1695
HhaI GCGC 6 cut(s) 20, 158, 444, 1108, 2278, 3082
Hin6I GCGC 6 cut(s) 18, 156, 442, 1106, 2276, 3080
HinP1I GCGC 6 cut(s) 18, 156, 442, 1106, 2276, 3080
HincII GTYRAC 1 cut(s) 1339
HindII GTYRAC 1 cut(s) 1339
HindIII AAGCTT 2 cut(s) 89, 1715
HinfI GANTC 7 cut(s) 105, 1040, 1384, 1640, 2210, 2790, 2810
HphI GGTGA 1 cut(s) 3217
Hpy166II GTNNAC 6 cut(s) 177, 707, 1063, 1339, 1849, 2233
Hpy8I GTNNAC 6 cut(s) 177, 707, 1063, 1339, 1849, 2233
Hpy99I CGWCG 1 cut(s) 469
HpyCH4IV ACGT 4 cut(s) 467, 1096, 1279, 2449
HpySE526I ACGT 4 cut(s) 467, 1096, 1279, 2449
HspAI GCGC 6 cut(s) 18, 156, 442, 1106, 2276, 3080
Kzo9I GATC 7 cut(s) 748, 1593, 1606, 1759, 2040, 2763, 2776
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 7 cut(s) 216, 956, 1132, 1799, 1838, 2123, 3008
Lsp1109I GCAGC 8 cut(s) 2, 156, 643, 1213, 1720, 1978, 2888, 2890
MaeI CTAG 2 cut(s) 582, 959
MaeII ACGT 4 cut(s) 467, 1096, 1279, 2449
MaeIII GTNAC 7 cut(s) 468, 1804, 1960, 2801, 2974, 3130, 3170
MalI GATC 7 cut(s) 750, 1595, 1608, 1761, 2042, 2765, 2778
MbiI CCGCTC 1 cut(s) 758
MboI GATC 7 cut(s) 748, 1593, 1606, 1759, 2040, 2763, 2776
MfeI CAATTG 6 cut(s) 818, 1509, 1867, 2036, 2679, 2797
MflI RGATCY 1 cut(s) 748
MhlI GDGCHC 2 cut(s) 66, 709
MlyI GAGTC 4 cut(s) 1049, 1378, 2219, 2799
MmeI TCCRAC 4 cut(s) 1476, 2187, 2202, 2646
Mph1103I ATGCAT 2 cut(s) 1300, 2470
MroXI GAANNNNTTC 4 cut(s) 1272, 1773, 2442, 2943
MslI CAYNNNNRTG 2 cut(s) 1079, 2249
MspA1I CMGCKG 2 cut(s) 147, 634
MspR9I CCNGG 4 cut(s) 317, 645, 746, 3040
MunI CAATTG 6 cut(s) 818, 1509, 1867, 2036, 2679, 2797
Mva1269I GAATGC 1 cut(s) 205
MvaI CCWGG 4 cut(s) 317, 645, 746, 3040
MvnI CGCG 2 cut(s) 1266, 2436
NcoI CCATGG 1 cut(s) 279
NdeI CATATG 1 cut(s) 1168
NdeII GATC 7 cut(s) 748, 1593, 1606, 1759, 2040, 2763, 2776
NlaIV GGNNCC 5 cut(s) 135, 218, 964, 1840, 2089
NmuCI GTSAC 3 cut(s) 1960, 2801, 3130
NruI TCGCGA 2 cut(s) 1266, 2436
NsiI ATGCAT 2 cut(s) 1300, 2470
NspI RCATGY 5 cut(s) 1094, 1298, 1985, 2264, 2468
PciI ACATGT 3 cut(s) 1090, 1981, 2260
PciSI GCTCTTC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 1 cut(s) 205
PdmI GAANNNNTTC 4 cut(s) 1272, 1773, 2442, 2943
PfeI GAWTC 3 cut(s) 105, 1640, 2810
PkrI GCNGC 8 cut(s) 17, 146, 633, 1228, 1735, 1993, 2878, 2905
PleI GAGTC 4 cut(s) 1048, 1378, 2218, 2798
PpsI GAGTC 4 cut(s) 1048, 1378, 2218, 2798
PpuMI RGGWCCY 2 cut(s) 134, 742
PscI ACATGT 3 cut(s) 1090, 1981, 2260
PshAI GACNNNNGTC 1 cut(s) 2524
Psp5II RGGWCCY 2 cut(s) 134, 742
Psp6I CCWGG 4 cut(s) 315, 643, 744, 3038
PspFI CCCAGC 1 cut(s) 2254
PspGI CCWGG 4 cut(s) 315, 643, 744, 3038
PspN4I GGNNCC 5 cut(s) 135, 218, 964, 1840, 2089
PspPI GGNCC 6 cut(s) 134, 742, 920, 1373, 2087, 2543
PspPPI RGGWCCY 2 cut(s) 134, 742
PstI CTGCAG 1 cut(s) 2878
PstNI CAGNNNCTG 3 cut(s) 1226, 1949, 3119
PsuI RGATCY 1 cut(s) 748
RruI TCGCGA 2 cut(s) 1266, 2436
RseI CAYNNNNRTG 2 cut(s) 1079, 2249
SapI GCTCTTC 1 cut(s) 146
SatI GCNGC 8 cut(s) 16, 145, 632, 1227, 1734, 1992, 2877, 2904
Sau3AI GATC 7 cut(s) 748, 1593, 1606, 1759, 2040, 2763, 2776
Sau96I GGNCC 6 cut(s) 134, 742, 920, 1373, 2087, 2543
SchI GAGTC 4 cut(s) 1049, 1378, 2219, 2799
ScrFI CCNGG 4 cut(s) 317, 645, 746, 3040
SduI GDGCHC 2 cut(s) 66, 709
SfcI CTRYAG 4 cut(s) 1476, 1845, 2619, 2874
SinI GGWCC 5 cut(s) 134, 742, 920, 1373, 2543
SmiMI CAYNNNNRTG 2 cut(s) 1079, 2249
SmlI CTYRAG 6 cut(s) 1199, 1543, 1861, 1965, 2369, 2713
SmoI CTYRAG 6 cut(s) 1199, 1543, 1861, 1965, 2369, 2713
SsiI CCGC 6 cut(s) 147, 541, 634, 756, 1741, 2911
SspI AATATT 1 cut(s) 2935
SspMI CTAG 2 cut(s) 582, 959
StyD4I CCNGG 4 cut(s) 315, 643, 744, 3038
StyI CCWWGG 3 cut(s) 279, 1689, 2859
TaiI ACGT 4 cut(s) 470, 1099, 1282, 2452
TaqI TCGA 2 cut(s) 66, 2046
TatI WGTACW 5 cut(s) 839, 925, 1181, 2263, 2351
TfiI GAWTC 3 cut(s) 105, 1640, 2810
TscAI CASTG 7 cut(s) 214, 553, 1914, 1919, 2812, 3089, 3139
TseFI GTSAC 3 cut(s) 1960, 2801, 3130
TseI GCWGC 8 cut(s) 15, 144, 631, 1226, 1733, 1991, 2876, 2903
Tsp45I GTSAC 3 cut(s) 1960, 2801, 3130
TspGWI ACGGA 4 cut(s) 1020, 1294, 1714, 3180
TspRI CASTG 7 cut(s) 214, 553, 1914, 1919, 2812, 3089, 3139
VneI GTGCAC 1 cut(s) 705
VpaK11BI GGWCC 5 cut(s) 134, 742, 920, 1373, 2543
XagI CCTNNNNNAGG 3 cut(s) 687, 927, 2048
XapI RAATTY 2 cut(s) 2027, 2503
XceI RCATGY 5 cut(s) 1094, 1298, 1985, 2264, 2468
XmiI GTMKAC 1 cut(s) 1848
XmnI GAANNNNTTC 4 cut(s) 1272, 1773, 2442, 2943
XspI CTAG 2 cut(s) 582, 959
Zsp2I ATGCAT 2 cut(s) 1300, 2470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.