Prupe.4G106600_v2.0.a1

Protein ROOT HAIR DEFECTIVE 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016952
Physical Location & Seq
Reverse (-)
5556449 .. 5570664
14216 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G106600.2_v2.0.a1.CDS.21

Sequence Viewer

Length: 4506 bp
ATGGAGGAAGATTGCTGCGCCACGCAACTCATCTATGGAGATGGTAAGTTTAATGCTGGTGGGCTCGACAGGTTCGTCAAGGAAGTGAAGCTTGCTGAGTGTGGAATCTCCTATGGTGTTGTAGCTATCGTGGGTCCTCAGAGCAGCGGGAAGAGCGCTTTACAGAACCATCTGTTCACTACTCAATTTGCAAACAGTAGAAGGAGCCAAACTACGAACGGTATATGGATAGCCAAGTGTGTTGGGATTGAGCCTTGCACGATTGCCATGGATTTGGAGGGTGCTGATGGCAGGGAGAGAGGCCAGGATGATACATTCAAGGTGCAAAGCACCCTATTTGCTCTGGCAGTTTCAGACATTGTGCTGATAAATATCAAAGGCTATTCATTTTTTGCAGACGGAATGCTTGAAAAGAAGCTGACGTGGCAGGAAGCGTACTTAAAATGGTCTATTTCCGAGCGAGAAATACCTTTGCTTGAAACATTTTTTCAGGTTGTGATGAGCTTTGGCATCCCCCGTAAAACAACGTTACTGTTTGTTATACACGATAATGCAAAGCCCCCGTTTCAACATTGGCACCCTGGTTTGAGGAAATTTATACTGAATCTATTATTCAGTACAGCGCTAGAGAAGATATGGAATGAAGTTCCGAAGCCCCAAGCCCATAAAAGTACCCGCTTCAGTGATCTCTTTAGTGAAGAAGTAGTTGTTATGTCTAGTTATGAAGAGAAGGAGAAGTTTAAGGAGGAGGTTGCTCAACTGAGGCAGCGGTTGTCTCCAGGTATGTTGTTTGCTGGTTATAGAAGGGGTCTTGTCCCTGCCTCAGGATTTTCCTTTAGTGCACAACAGATTTGGAAAGTAATCAAAGAGAACAAGGACCTGGATCTTCCTGCTCACAAGGTTATGGTTGCCACTGTTCGGTGTGAAGAGATTGCAAACCAGATATTCAATCAATTGACATATGATACGGGTTGGTTGGCATTGAAAGAAGCTGTCCAAACAGGTCCTGTACAAGGTTTTGGTCAAAGGCTCAGCTCCATTCTAAGCACCTATATTTCTAAATATGACACAGAGGCCATCTACTTTGACAGTGGTGCATGGTACTCAAAACGACAACTTTTGGAGTCAAAAGCTTTGGATTTCGTTTACCCTGCACACACGACCATGTTGGGACATGTACGTTCTAAAGCACTTGAAGATTTCAAAGTGAGGCTGGAGCAATCGTTAAACGAAGGAAGAGGATTTGCTTCATATGTTCGTATCTGTACTCACTCTTCCATGCTTGAGTTTGACAAAGGATGTGCAGATGCTGCCTTACAACAAGCTAATTGGGATGCATCAAGAGTTCGTGAAAAACTTCAACGTGATGTAGATGCACATGCATCATACATTTGTAGTGCAAAGTTGTTAGAATTGATTTTCAACTATGAGAAACAACTGTCTATATCTTTAACTGGACCAGTAAAGAGTCTACTTGTAACTGGTGGAAAAGACACTTGGGCTTCAATAAGAAAACTTCTTAATCATGAAACTGAAGTTGCAATATCAAAGTTTTCAACTGTAGTTGCTGATTTTGAGTTGGACAAAGCAACAATTGCTAAAATGTTGCAACATTTAAGGGATTACTCAAGGTATGTGGTGGAGAAAAAAACAAGGGAAGAGGCTACGAAAATTATGATCCACATGAAGGATCGGTTTTCAACAGTCTTGAATTATGACAGTGATACAACGCTTCGGGTTTGGACTGGTAAAGAAGACATTACAAGTATTACCAAGGATGCTCGCTCTGCGTCTATGAAGTTTTTGTCTGTCATGGCTGCCATCCGCTTGGATGAGAAGCCAGATAATATTGAAAAAGTTCTCTTTTCTTCTCTAATGGATGGAGCTGTTATTGTTTCATCTTCACAAGATAGGGAAATCGGAGCTTCTGTAGACCCTCTCGCCTCAAGCAATTGGGAAGAGGTTTCTGCAAAGAATACCTTAATAACTCCAGTTCAGTGCCAGTCCTTGTGGAGGCAGTTCAAAGTAGAGACTGAGAATAGTGTCACTCAAGCTATTTCATCACATGTTATGGCTGCTACTGGTCGATGTGAAGGGATAGCCAACCAGAAATTCAGTCAGTTGATCTTCGATGAGGATTGGTTGGCATTGGAAGAAGCTGTCCAAATTGGCCCCGTACAAGGTTTTGGTAAAAGGCTCAGCTCCATTTTAAGCAACTATCTTTCTAAATATGACACAGAGGCCACCATCTACTTTGACGAAGGTGCAAGGAACTCAAAACGACAACTTTTGGAGTCAAAAGCGTTGGATTTTGTTTACCCTGCATACACGACCATGTTGGGACATGTACGTTCCAAAGCGCTTAAAGATTTTAAAGTGAGGCTAGAGCAATCATTAAACAAAGGAAGAGGATTTGCTACATATGTTTGTATCTGTACTCACTCTTCCATGCTTGAGTTTGACAAAGGATGTGCAGATGCTGCCGTAATACAAGCTAATTGGGATGCTTCAAGAGTTCGCGAAAAACTTCAACGTGATATAGATGCACATGCATCATCCGTTTGTAGTGCAAAGTTGTCAGAATTGAATGTCAACTATGAGCAACAACTGTCTGCATCTTTAACTGGACCAGTAAAGACTCTACTTGAAAGTGGTGGAAAAGACACTTGGGCTTCAATAAGAAAACTTCTTAATCGTGAAACTGAAGTTGCTATATCAGAGTTTTCAACTGTAGTTGCCGATTTTGAGTTGGACGAAGCAACAATTGCCGAAATGTTGCAACATTTAAGGGATTACTCAAGGAATGTGGTGGAGAAAAAAGCAAGGGAAGAGGCTAGGAAAATTATGATCCACATGAAGGATCGGTTTTCCACAGTCTTCAATTATGACAGCGATTCAACGCTTCGGGTTTGGACTGGTAAAGAAGACATTACAAGTATTACCAAGGATGCTCGCTCTGCGTCTATGAAGCTTTTGTCCGTCATGGCTGCCATCCGCTTGGATGAGAAGCCAGATCATATTGAAAAAGTTCTCTTTTCCTCTCTAATGGATGGAGATGTTACTGTTTCATCTTCACAAGATAGGGAAATCGGAGCCTCTGTAGACCCTCTCGCCTCAAGCAATTGGGAAGAGGTTTCTTCAAAGAATACCTTAATTACACCAGTGCAGTGCCAGTCCTTGTGGAGACAGTTCATAGCGGAGATTGAGAATAGTGTCACTCAAGCTATTTCAGCACATGTTATGGCTGCTACTGCTCGGTTTGAAGAGATAGCCATCCAGAAATTCAGTCAATTGATCCTCGATGAGGATTGGTTGGCATTGGAAGAAGCTGTCCAAATTGGCCCCGTACAAGGTTTTGGTAAAAGGCTCAGCTCCATTTTAAGCACCTATCTTTCTAAATATGACACAGAGGCCACCATCTACTTTGACGAAGGTGCAAGGAACTCAAAACGACAACTGTTGGAGTCAAAAGCGTTGGATTTTGTTTACCCTGCGTACACAACCATGTTGGGACATGTACATTCTAAAGCGCTTGTAGATTTTAAAGTGAGACTGGAACAATCGTTAAACAAAGGAGAAGGATTTACTTTATCTGTTCGTACCTGTACTCAGTCTTCTATACTTGAGTTTGACAAAGGATGTGCAGATGTTGCCATACAACAAGCTAATTGGGATGCTTCAAGAGTTCGCGAAAAACTTCAACGTGATATAGATGCACATGAATCATCCATTTGTAGTGCAAAGTTGTTAGAATTGAATTTCAATTATGAGAGACAACTGTCTGCATCTTTAACTGGACCAGTAGAGGCTCTACTTGAAACTGGTGGAAAAGACACTTGGGGTTCAATAAGAAAACTACTTAATCGTGAAACTGAAGTTGCAATATCAAAGTTTTCAATCGCAATTTCCGATTTTGAGTTGGACAAAGAAACAATTGCCAAAATGTTGCAACATTTAAGGGATTACTCAAGGAATGTGGTGGAGAAAGTTGCAAGAGAAGAGGCTACAAAAATTATGATCCACATGAAGGATCGGTTTTTCAGAGTCTTCAATTGTGACAGTGATTCAATGCCTCGGGTTTGGACTGAGAAAGAAGACATCAGAAGTATTACCAAGGATGCTCGCTCTGCAGCTTTGAACCTTTTGTCAATCATGGCTGCCATCCGATTGGATGAGAAGTCAGATAATATTGAAAAAGTTCTCTTTTCTTCTCTGATGGATGAAACTGTTACTGTTTCATCTTCACAAGATAGGAGAATAGGAGCTTCTGCATACCTTCTTGCTTCAAGCACTTGGGAAGAGGTTTCTTCAAAAGATATCTTAATTACTCCAGTGCAGTGCAAGTCCTTGTGGGGAGAGTTCAAAACAGAGACTGAGTCTAGTGTCACTGAAGCTATTTTAGCGCAGGAGGCTTACAAGCAGAGTAACAACTGGTTGCCTCCTCCGTGGGCTATTATGGTGATGGTCGTTCATGGTTTCAACCAATTTATGCTCCTTTTAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RHD3

Protein Analysis

1502

Amino Acids

168.97

Weight (kDa)

5.86

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 576
AccI GTMKAC 3 cut(s) 1471, 1932, 3102
AccII CGCG 2 cut(s) 2520, 3690
AciI CCGC 6 cut(s) 147, 676, 769, 1825, 2995, 3197
AclI AACGTT 1 cut(s) 527
AclWI GGATC 8 cut(s) 891, 1672, 1698, 2842, 2868, 3289, 4012, 4038
AcsI RAATTY 4 cut(s) 593, 2111, 3281, 3757
AcuI CTGAAG 5 cut(s) 664, 1554, 2724, 3894, 4410
AfeI AGCGCT 4 cut(s) 157, 624, 2361, 3531
AflIII ACRYGT 5 cut(s) 1174, 2065, 2344, 3235, 3514
AjiI CACGTC 1 cut(s) 423
AjnI CCWGG 4 cut(s) 303, 580, 778, 879
AjuI GAANNNNNNNTTGG 8 cut(s) 1480, 1512, 2096, 2128, 2650, 2682, 3820, 3852
Alw21I GWGCWC 1 cut(s) 844
Alw26I GTCTC 6 cut(s) 780, 2024, 3178, 3544, 3766, 4364
Alw44I GTGCAC 1 cut(s) 840
AlwI GGATC 8 cut(s) 891, 1672, 1698, 2842, 2868, 3289, 4012, 4038
AlwNI CAGNNNCTG 4 cut(s) 1007, 1310, 2480, 4373
Ama87I CYCGRG 1 cut(s) 4074
Aor51HI AGCGCT 4 cut(s) 157, 624, 2361, 3531
AoxI GGCC 6 cut(s) 301, 1074, 2170, 2241, 3340, 3411
ApaLI GTGCAC 1 cut(s) 840
ApoI RAATTY 4 cut(s) 593, 2111, 3281, 3757
Asp700I GAANNNNTTC 6 cut(s) 1356, 1857, 2526, 3027, 3696, 4197
AspLEI GCGC 6 cut(s) 20, 158, 625, 2362, 3532, 4405
AspS9I GGNCC 8 cut(s) 134, 877, 1004, 1457, 2171, 2627, 3341, 3797
AsuHPI GGTGA 1 cut(s) 4471
AvaI CYCGRG 1 cut(s) 4074
AvaII GGWCC 6 cut(s) 134, 877, 1004, 1457, 2627, 3797
AxyI CCTNAGG 1 cut(s) 823
BaeGI GKGCMC 1 cut(s) 844
BanI GGYRCC 1 cut(s) 576
BanII GRGCYC 1 cut(s) 66
BarI GAAGNNNNNNTAC 6 cut(s) 1258, 1290, 2428, 2460, 3598, 3630
BbsI GAAGAC 6 cut(s) 1761, 2869, 2931, 3606, 4039, 4101
Bbv12I GWGCWC 1 cut(s) 844
BceAI ACGGC 1 cut(s) 2468
BciT130I CCWGG 4 cut(s) 305, 582, 780, 881
BcoDI GTCTC 6 cut(s) 780, 2024, 3178, 3544, 3766, 4364
BfaI CTAG 5 cut(s) 626, 717, 2384, 2835, 4380
BfmI CTRYAG 5 cut(s) 1560, 1929, 2730, 3099, 4128
BfoI RGCGCY 4 cut(s) 159, 626, 2363, 3533
BlpI GCTNAGC 3 cut(s) 1031, 2198, 3368
Bme1390I CCNGG 4 cut(s) 305, 582, 780, 881
Bme18I GGWCC 6 cut(s) 134, 877, 1004, 1457, 2627, 3797
BmeT110I CYCGRG 1 cut(s) 4074
BmgBI CACGTC 1 cut(s) 423
BmgT120I GGNCC 8 cut(s) 134, 877, 1004, 1457, 2171, 2627, 3341, 3797
BmiI GGNNCC 6 cut(s) 135, 206, 578, 2173, 3094, 3343
BmrFI CCNGG 4 cut(s) 305, 582, 780, 881
BoxI GACNNNNGTC 1 cut(s) 3778
BpiI GAAGAC 6 cut(s) 1761, 2869, 2931, 3606, 4039, 4101
BpmI CTGGAG 4 cut(s) 762, 1235, 1974, 4314
Bpu1102I GCTNAGC 3 cut(s) 1031, 2198, 3368
BsaBI GATNNNNATC 2 cut(s) 371, 3272
BsaJI CCNNGG 7 cut(s) 267, 580, 1773, 2943, 4073, 4113, 4445
BsaXI ACNNNNNCTCC 6 cut(s) 1208, 1238, 1914, 1944, 3084, 3114
Bse21I CCTNAGG 1 cut(s) 823
Bse8I GATNNNNATC 2 cut(s) 371, 3272
BseBI CCWGG 4 cut(s) 305, 582, 780, 881
BseDI CCNNGG 7 cut(s) 267, 580, 1773, 2943, 4073, 4113, 4445
BseJI GATNNNNATC 2 cut(s) 371, 3272
BseRI GAGGAG 2 cut(s) 761, 4431
BseSI GKGCMC 1 cut(s) 844
BsgI GTGCAG 6 cut(s) 1137, 1323, 2493, 3185, 3663, 4355
Bsh1236I CGCG 2 cut(s) 2520, 3690
BshFI GGCC 6 cut(s) 303, 1076, 2172, 2243, 3342, 3413
BshNI GGYRCC 1 cut(s) 576
BsiHKAI GWGCWC 1 cut(s) 844
BsiHKCI CYCGRG 1 cut(s) 4074
BslFI GGGAC 4 cut(s) 800, 1185, 2355, 3525
BsmAI GTCTC 6 cut(s) 780, 2024, 3178, 3544, 3766, 4364
BsmFI GGGAC 4 cut(s) 800, 1185, 2355, 3525
BsmI GAATGC 1 cut(s) 408
BsnI GGCC 6 cut(s) 303, 1076, 2172, 2243, 3342, 3413
BsoBI CYCGRG 1 cut(s) 4074
Bsp1286I GDGCHC 2 cut(s) 66, 844
Bsp1407I TGTACA 2 cut(s) 1009, 3517
Bsp1720I GCTNAGC 3 cut(s) 1031, 2198, 3368
Bsp19I CCATGG 1 cut(s) 267
Bsp68I TCGCGA 2 cut(s) 2520, 3690
BspACI CCGC 6 cut(s) 147, 676, 769, 1825, 2995, 3197
BspANI GGCC 6 cut(s) 303, 1076, 2172, 2243, 3342, 3413
BspFNI CGCG 2 cut(s) 2520, 3690
BspHI TCATGA 1 cut(s) 1525
BspLI GGNNCC 6 cut(s) 135, 206, 578, 2173, 3094, 3343
BspMAI CTGCAG 1 cut(s) 4132
BspPI GGATC 8 cut(s) 891, 1672, 1698, 2842, 2868, 3289, 4012, 4038
BspQI GCTCTTC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 576
BsrGI TGTACA 2 cut(s) 1009, 3517
BssECI CCNNGG 7 cut(s) 267, 580, 1773, 2943, 4073, 4113, 4445
BssT1I CCWWGG 4 cut(s) 267, 1773, 2943, 4113
Bst2UI CCWGG 4 cut(s) 305, 582, 780, 881
BstAPI GCANNNNNTGC 5 cut(s) 1310, 1595, 2480, 2765, 3650
BstAUI TGTACA 2 cut(s) 1009, 3517
BstC8I GCNNGC 4 cut(s) 93, 1783, 2953, 4123
BstDSI CCRYGG 2 cut(s) 267, 4445
BstENI CCTNNNNNAGG 4 cut(s) 822, 1011, 2011, 3302
BstFNI CGCG 2 cut(s) 2520, 3690
BstH2I RGCGCY 4 cut(s) 159, 626, 2363, 3533
BstHHI GCGC 6 cut(s) 20, 158, 625, 2362, 3532, 4405
BstMAI GTCTC 6 cut(s) 780, 2024, 3178, 3544, 3766, 4364
BstNI CCWGG 4 cut(s) 305, 582, 780, 881
BstNSI RCATGY 7 cut(s) 1178, 1382, 2069, 2348, 2552, 3239, 3518
BstPAI GACNNNNGTC 1 cut(s) 3778
BstSCI CCNGG 4 cut(s) 303, 580, 778, 879
BstSFI CTRYAG 5 cut(s) 1560, 1929, 2730, 3099, 4128
BstSLI GKGCMC 1 cut(s) 844
BstUI CGCG 2 cut(s) 2520, 3690
BstV2I GAAGAC 6 cut(s) 1761, 2869, 2931, 3606, 4039, 4101
BstX2I RGATCY 1 cut(s) 883
BstXI CCANNNNNNTGG 4 cut(s) 274, 1828, 2998, 4168
BstYI RGATCY 1 cut(s) 883
Bsu36I CCTNAGG 1 cut(s) 823
BsuRI GGCC 6 cut(s) 303, 1076, 2172, 2243, 3342, 3413
BtgI CCRYGG 2 cut(s) 267, 4445
BtrI CACGTC 1 cut(s) 423
BtsI GCAGTG 2 cut(s) 3173, 4343
BtuMI TCGCGA 2 cut(s) 2520, 3690
Cac8I GCNNGC 4 cut(s) 93, 1783, 2953, 4123
CaiI CAGNNNCTG 4 cut(s) 1007, 1310, 2480, 4373
CciI TCATGA 1 cut(s) 1525
CfoI GCGC 6 cut(s) 20, 158, 625, 2362, 3532, 4405
Cfr13I GGNCC 8 cut(s) 134, 877, 1004, 1457, 2171, 2627, 3341, 3797
CseI GACGC 2 cut(s) 1779, 2949
CspCI CAANNNNNGTGG 6 cut(s) 1617, 1652, 2787, 2822, 3957, 3992
DraI TTTAAA 3 cut(s) 2374, 3544, 4500
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
Eco130I CCWWGG 4 cut(s) 267, 1773, 2943, 4113
Eco24I GRGCYC 1 cut(s) 66
Eco32I GATATC 1 cut(s) 4318
Eco47I GGWCC 6 cut(s) 134, 877, 1004, 1457, 2627, 3797
Eco47III AGCGCT 4 cut(s) 157, 624, 2361, 3531
Eco57I CTGAAG 5 cut(s) 664, 1554, 2724, 3894, 4410
Eco81I CCTNAGG 1 cut(s) 823
Eco88I CYCGRG 1 cut(s) 4074
EcoNI CCTNNNNNAGG 4 cut(s) 822, 1011, 2011, 3302
EcoO109I RGGNCCY 3 cut(s) 134, 877, 1004
EcoRII CCWGG 4 cut(s) 303, 580, 778, 879
EcoRV GATATC 1 cut(s) 4318
EcoT14I CCWWGG 4 cut(s) 267, 1773, 2943, 4113
EcoT22I ATGCAT 3 cut(s) 1339, 1384, 2554
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 4 cut(s) 267, 1773, 2943, 4113
FalI AAGNNNNNCTT 6 cut(s) 75, 107, 1964, 1996, 3134, 3166
FaqI GGGAC 4 cut(s) 800, 1185, 2355, 3525
FauI CCCGC 2 cut(s) 140, 683
FauNDI CATATG 3 cut(s) 961, 1252, 2422
FblI GTMKAC 3 cut(s) 1471, 1932, 3102
FriOI GRGCYC 1 cut(s) 66
FspBI CTAG 5 cut(s) 626, 717, 2384, 2835, 4380
GlaI GCGC 6 cut(s) 19, 157, 624, 2361, 3531, 4404
GsuI CTGGAG 4 cut(s) 762, 1235, 1974, 4314
HaeII RGCGCY 4 cut(s) 159, 626, 2363, 3533
HaeIII GGCC 6 cut(s) 303, 1076, 2172, 2243, 3342, 3413
HgaI GACGC 2 cut(s) 1779, 2949
HhaI GCGC 6 cut(s) 20, 158, 625, 2362, 3532, 4405
Hin6I GCGC 6 cut(s) 18, 156, 623, 2360, 3530, 4403
HinP1I GCGC 6 cut(s) 18, 156, 623, 2360, 3530, 4403
HincII GTYRAC 1 cut(s) 2593
HindII GTYRAC 1 cut(s) 2593
HindIII AAGCTT 3 cut(s) 89, 1131, 2969
HphI GGTGA 1 cut(s) 4471
HpyCH4IV ACGT 7 cut(s) 422, 527, 1180, 1363, 2350, 2533, 3703
HpySE526I ACGT 7 cut(s) 422, 527, 1180, 1363, 2350, 2533, 3703
HspAI GCGC 6 cut(s) 18, 156, 623, 2360, 3530, 4403
LguI GCTCTTC 1 cut(s) 146
MaeI CTAG 5 cut(s) 626, 717, 2384, 2835, 4380
MaeII ACGT 7 cut(s) 422, 527, 1180, 1363, 2350, 2533, 3703
MaeIII GTNAC 9 cut(s) 528, 1477, 2044, 3058, 3214, 4055, 4228, 4384, 4424
MfeI CAATTG 8 cut(s) 953, 1593, 1951, 2763, 3121, 3290, 3933, 4051
MflI RGATCY 1 cut(s) 883
MhlI GDGCHC 2 cut(s) 66, 844
MlyI GAGTC 7 cut(s) 1133, 1477, 2303, 2632, 3473, 4053, 4385
MmeI TCCRAC 6 cut(s) 1560, 2286, 2730, 3441, 3456, 3900
Mph1103I ATGCAT 3 cut(s) 1339, 1384, 2554
MroXI GAANNNNTTC 6 cut(s) 1356, 1857, 2526, 3027, 3696, 4197
MslI CAYNNNNRTG 4 cut(s) 549, 1163, 2333, 3503
MspA1I CMGCKG 2 cut(s) 147, 769
MspR9I CCNGG 4 cut(s) 305, 582, 780, 881
MunI CAATTG 8 cut(s) 953, 1593, 1951, 2763, 3121, 3290, 3933, 4051
Mva1269I GAATGC 1 cut(s) 408
MvaI CCWGG 4 cut(s) 305, 582, 780, 881
MvnI CGCG 2 cut(s) 2520, 3690
NcoI CCATGG 1 cut(s) 267
NdeI CATATG 3 cut(s) 961, 1252, 2422
NlaIV GGNNCC 6 cut(s) 135, 206, 578, 2173, 3094, 3343
NmuCI GTSAC 4 cut(s) 2044, 3214, 4055, 4384
NruI TCGCGA 2 cut(s) 2520, 3690
NsiI ATGCAT 3 cut(s) 1339, 1384, 2554
NspI RCATGY 7 cut(s) 1178, 1382, 2069, 2348, 2552, 3239, 3518
PagI TCATGA 1 cut(s) 1525
PciI ACATGT 5 cut(s) 1174, 2065, 2344, 3235, 3514
PciSI GCTCTTC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 3906
PctI GAATGC 1 cut(s) 408
PdmI GAANNNNTTC 6 cut(s) 1356, 1857, 2526, 3027, 3696, 4197
PfeI GAWTC 5 cut(s) 105, 604, 2894, 3722, 4064
PflFI GACNNNGTC 1 cut(s) 4375
PleI GAGTC 7 cut(s) 1132, 1476, 2302, 2632, 3472, 4052, 4384
PpsI GAGTC 7 cut(s) 1132, 1476, 2302, 2632, 3472, 4052, 4384
PpuMI RGGWCCY 3 cut(s) 134, 877, 1004
PscI ACATGT 5 cut(s) 1174, 2065, 2344, 3235, 3514
PshAI GACNNNNGTC 1 cut(s) 3778
Psp1406I AACGTT 1 cut(s) 527
Psp5II RGGWCCY 3 cut(s) 134, 877, 1004
Psp6I CCWGG 4 cut(s) 303, 580, 778, 879
PspGI CCWGG 4 cut(s) 303, 580, 778, 879
PspN4I GGNNCC 6 cut(s) 135, 206, 578, 2173, 3094, 3343
PspPI GGNCC 8 cut(s) 134, 877, 1004, 1457, 2171, 2627, 3341, 3797
PspPPI RGGWCCY 3 cut(s) 134, 877, 1004
PstI CTGCAG 1 cut(s) 4132
PstNI CAGNNNCTG 4 cut(s) 1007, 1310, 2480, 4373
PsuI RGATCY 1 cut(s) 883
PsyI GACNNNGTC 1 cut(s) 4375
RruI TCGCGA 2 cut(s) 2520, 3690
RseI CAYNNNNRTG 4 cut(s) 549, 1163, 2333, 3503
SapI GCTCTTC 1 cut(s) 146
Sau96I GGNCC 8 cut(s) 134, 877, 1004, 1457, 2171, 2627, 3341, 3797
SchI GAGTC 7 cut(s) 1133, 1477, 2303, 2632, 3473, 4053, 4385
ScrFI CCNGG 4 cut(s) 305, 582, 780, 881
SduI GDGCHC 2 cut(s) 66, 844
SfcI CTRYAG 5 cut(s) 1560, 1929, 2730, 3099, 4128
SinI GGWCC 6 cut(s) 134, 877, 1004, 1457, 2627, 3797
SmiMI CAYNNNNRTG 4 cut(s) 549, 1163, 2333, 3503
SsiI CCGC 6 cut(s) 147, 676, 769, 1825, 2995, 3197
SspI AATATT 2 cut(s) 1849, 4189
SspMI CTAG 5 cut(s) 626, 717, 2384, 2835, 4380
StyD4I CCNGG 4 cut(s) 303, 580, 778, 879
StyI CCWWGG 4 cut(s) 267, 1773, 2943, 4113
TaiI ACGT 7 cut(s) 425, 530, 1183, 1366, 2353, 2536, 3706
TaqI TCGA 4 cut(s) 66, 2086, 2130, 3300
TatI WGTACW 6 cut(s) 617, 1009, 1265, 2435, 3517, 3605
TfiI GAWTC 5 cut(s) 105, 604, 2894, 3722, 4064
TseFI GTSAC 4 cut(s) 2044, 3214, 4055, 4384
Tsp45I GTSAC 4 cut(s) 2044, 3214, 4055, 4384
TspGWI ACGGA 4 cut(s) 414, 2548, 2968, 4434
Tth111I GACNNNGTC 1 cut(s) 4375
VneI GTGCAC 1 cut(s) 840
VpaK11BI GGWCC 6 cut(s) 134, 877, 1004, 1457, 2627, 3797
XagI CCTNNNNNAGG 4 cut(s) 822, 1011, 2011, 3302
XapI RAATTY 4 cut(s) 593, 2111, 3281, 3757
XceI RCATGY 7 cut(s) 1178, 1382, 2069, 2348, 2552, 3239, 3518
XmiI GTMKAC 3 cut(s) 1471, 1932, 3102
XmnI GAANNNNTTC 6 cut(s) 1356, 1857, 2526, 3027, 3696, 4197
XspI CTAG 5 cut(s) 626, 717, 2384, 2835, 4380
Zsp2I ATGCAT 3 cut(s) 1339, 1384, 2554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.