Prupe.4G156700_v2.0.a1

Protein ROOT INITIATION DEFECTIVE 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0017626
Physical Location & Seq
Reverse (-)
8975557 .. 8977272
1716 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G156700.1

Sequence Viewer

Length: 1233 bp
ATGTCTTCTTCTCCACATGAAATTGTCCTCACCAGCTCTCCTGACGGCCCCATTATTGCCTATGATGCTTCCTCAGGCGCCGCCCTAGCACAATTCACAGGCAGCCGGTCACCACGCCGAGGCCTTGCAATTGTTGGGAAGAGTTATATTGCTGCCTCACACATATCACCAACCACTGCTTCTGGTTCAGTCCACCTTTACAATTGGTGGTCTTCAACTGCCTTCCATAACCTCCCTGTCCCGGAGCCCGTTGCACCCCTCACCGTCACGTCTGACGGGTTGTATCTCTTTGCCGGTGGCCTATCAGGCAGTGTGCATGGAATTTCAATCCCATCAGGGGATGTGCTCAAACCATTGCCTGCACATAGCAAGCCTGTGTCTTGCCTTGCAATCAGTGATGATGAGTCACTTCTGATTTCAGGCAGCGATGATGGGACCATTGTTGTTGTCCCTATCTTTCAGCTTGTAGGAGCCTCAGGATATGACAGTGTGGAAGAATTGATATTGCATAGGTTTGCTGCTCATTCTGATTCAGTGACTGCCATTGTTTCTGGTATGGGATTATGCAACTCCCAGATTATCTCATGCTCATTGGATTGCACATGTAAATTCTGGAGTCTCTTGCGTGGAACGCTCCTGCGTACCATTGTGTTTCCATGCACTATTTCATGGGTTGCATTGAACCCAACACAGCCTGAGTTCTATGTTGCAGGATCAGATGGTTCAGTACACAAGGGATCACTGAAAGTTGGAAGCAGGCAACTTGTGACCCAAGGCAGTGAATTGATCGCGTGGACTCCGAAGCACGGTGGTGCAGTTGTATCTATGGTGATGGTGAATGGGGGAAGGAATTTGATATCGGCTTCGGAAGACGGGAGTGTTTGGGTTTGGGAAGTTGATGCGGGTCAGGTGATCATGGCCCTTGGAAATGAGATGGGGAGCATTAGTGATCTGGTGGCAGCTACAGGCATAAATTGTAGCAAAGCCAATGGTTTTGGAATGAGCAATGGTGCTTACGGATCTGGAAATTGCTACTTTGGGTCTTCTGGCAAAGAACTTATGAATATGCCAATAAAGAAAATATTAGAAATGGAAGATGTGTTGAAAGTGGCTGCAAATGATAGAAACAGAGCCATTGATATGCTTGAATCTGCTATTGCAATGTATGAGAGGCTCTTGGAACTCATCCTCAAGGAAGCCAAGAGAGGTAGTCGCAACAACAAACAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

411

Amino Acids

43.21

Weight (kDa)

5.8

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017626)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g17760
malus_domestica MD03G1247800.v1.1
prunus_persica Prupe.4G156700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0029551
rosa_laevigata RLG00000033178
rosa_multiflora Rmu_sc0000210.1_g000015
rosa_roxburghii Rroxscaffold_1G00050390
rosa_samantha Rh5AG207000 Rh5BG205700 Rh5CG227800 Rh5DG209500
rosa_wichuraiana Rw5G018830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 77
AccII CGCG 1 cut(s) 791
AciI CCGC 2 cut(s) 81, 902
AclWI GGATC 3 cut(s) 721, 745, 1027
AcsI RAATTY 3 cut(s) 321, 608, 850
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 2 cut(s) 643, 729
AfiI CCNNNNNNNGG 4 cut(s) 119, 241, 337, 806
AflIII ACRYGT 1 cut(s) 602
AgsI TTSAA 5 cut(s) 216, 327, 682, 1105, 1148
AjiI CACGTC 1 cut(s) 270
AjuI GAANNNNNNNTTGG 2 cut(s) 163, 195
AleI CACNNNNGTG 1 cut(s) 810
AluBI AGCT 3 cut(s) 36, 463, 962
AluI AGCT 3 cut(s) 36, 463, 962
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 1 cut(s) 623
AlwI GGATC 3 cut(s) 721, 745, 1027
AlwNI CAGNNNCTG 1 cut(s) 539
AoxI GGCC 4 cut(s) 46, 121, 298, 918
ApeKI GCWGC 6 cut(s) 102, 152, 423, 518, 959, 1112
ApoI RAATTY 3 cut(s) 321, 608, 850
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 3 cut(s) 47, 435, 919
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 7 cut(s) 22, 102, 159, 253, 841, 847, 922
AvaII GGWCC 1 cut(s) 435
AxyI CCTNAGG 2 cut(s) 73, 475
BanI GGYRCC 1 cut(s) 77
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 3 cut(s) 204, 876, 1035
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 6 cut(s) 114, 139, 435, 505, 971, 1099
BccI CCATC 5 cut(s) 340, 425, 713, 826, 928
BceAI ACGGC 1 cut(s) 61
BclI TGATCA 1 cut(s) 912
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 623
BfaI CTAG 1 cut(s) 86
BfmI CTRYAG 1 cut(s) 963
BfoI RGCGCY 1 cut(s) 81
BglI GCCNNNNNGGC 1 cut(s) 306
BisI GCNGC 7 cut(s) 81, 103, 153, 424, 519, 960, 1113
BlsI GCNGC 7 cut(s) 82, 104, 154, 425, 520, 961, 1114
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 1 cut(s) 435
BmgBI CACGTC 1 cut(s) 270
BmgT120I GGNCC 3 cut(s) 47, 435, 919
BmiI GGNNCC 5 cut(s) 49, 79, 246, 436, 472
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 2 cut(s) 55, 889
BpiI GAAGAC 3 cut(s) 204, 876, 1035
BpmI CTGGAG 1 cut(s) 634
BpuEI CTTGAG 1 cut(s) 1175
BpuMI CCSGG 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 3 cut(s) 118, 772, 922
BsaXI ACNNNNNCTCC 4 cut(s) 22, 52, 931, 961
Bsc4I CCNNNNNNNGG 4 cut(s) 119, 241, 337, 806
Bse118I RCCGGY 2 cut(s) 105, 293
Bse21I CCTNAGG 2 cut(s) 73, 475
Bse3DI GCAATG 3 cut(s) 353, 1012, 1167
BseDI CCNNGG 3 cut(s) 118, 772, 922
BseGI GGATG 2 cut(s) 346, 1185
BseLI CCNNNNNNNGG 4 cut(s) 119, 241, 337, 806
BseMI GCAATG 3 cut(s) 353, 1012, 1167
BseMII CTCAG 3 cut(s) 87, 489, 687
BseXI GCAGC 6 cut(s) 114, 139, 435, 505, 971, 1099
BsgI GTGCAG 2 cut(s) 345, 834
Bsh1236I CGCG 1 cut(s) 791
BshFI GGCC 4 cut(s) 48, 123, 300, 920
BshNI GGYRCC 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 348
BsiSI CCGG 3 cut(s) 106, 242, 294
BslFI GGGAC 3 cut(s) 224, 434, 448
BslI CCNNNNNNNGG 4 cut(s) 119, 241, 337, 806
BsmAI GTCTC 1 cut(s) 623
BsmFI GGGAC 3 cut(s) 224, 434, 448
BsnI GGCC 4 cut(s) 48, 123, 300, 920
Bsp1286I GDGCHC 2 cut(s) 249, 348
Bsp143I GATC 6 cut(s) 713, 737, 786, 912, 949, 1019
BspACI CCGC 2 cut(s) 81, 902
BspANI GGCC 4 cut(s) 48, 123, 300, 920
BspCNI CTCAG 3 cut(s) 86, 488, 688
BspFNI CGCG 1 cut(s) 791
BspLI GGNNCC 5 cut(s) 49, 79, 246, 436, 472
BspPI GGATC 3 cut(s) 721, 745, 1027
BspT107I GGYRCC 1 cut(s) 77
BsrDI GCAATG 3 cut(s) 353, 1012, 1167
BsrFI RCCGGY 2 cut(s) 105, 293
BssAI RCCGGY 2 cut(s) 105, 293
BssECI CCNNGG 3 cut(s) 118, 772, 922
BssMI GATC 6 cut(s) 713, 737, 786, 912, 949, 1019
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 2 cut(s) 772, 922
Bst4CI ACNGT 4 cut(s) 265, 488, 809, 1227
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 3 cut(s) 360, 371, 758
BstDEI CTNAG 3 cut(s) 73, 475, 696
BstEII GGTNACC 1 cut(s) 108
BstF5I GGATG 2 cut(s) 346, 1185
BstFNI CGCG 1 cut(s) 791
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 6 cut(s) 716, 740, 789, 915, 952, 1022
BstMAI GTCTC 1 cut(s) 623
BstMBI GATC 6 cut(s) 713, 737, 786, 912, 949, 1019
BstMWI GCNNNNNNNGC 4 cut(s) 65, 86, 306, 631
BstNSI RCATGY 1 cut(s) 606
BstPI GGTNACC 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 240
BstSFI CTRYAG 1 cut(s) 963
BstUI CGCG 1 cut(s) 791
BstV1I GCAGC 6 cut(s) 114, 139, 435, 505, 971, 1099
BstV2I GAAGAC 3 cut(s) 204, 876, 1035
BstX2I RGATCY 1 cut(s) 1019
BstYI RGATCY 1 cut(s) 1019
Bsu36I CCTNAGG 2 cut(s) 73, 475
BsuRI GGCC 4 cut(s) 48, 123, 300, 920
BtgZI GCGATG 1 cut(s) 441
BtrI CACGTC 1 cut(s) 270
BtsCI GGATG 2 cut(s) 346, 1185
BtsI GCAGTG 3 cut(s) 174, 316, 784
BtsIMutI CAGTG 8 cut(s) 174, 316, 400, 493, 540, 740, 784, 1232
Cac8I GCNNGC 3 cut(s) 360, 371, 758
CaiI CAGNNNCTG 1 cut(s) 539
CfoI GCGC 1 cut(s) 80
Cfr10I RCCGGY 2 cut(s) 105, 293
Cfr13I GGNCC 3 cut(s) 47, 435, 919
Csp6I GTAC 2 cut(s) 642, 728
CviAII CATG 7 cut(s) 17, 317, 585, 603, 657, 669, 916
CviQI GTAC 2 cut(s) 642, 728
DdeI CTNAG 3 cut(s) 73, 475, 696
DinI GGCGCC 1 cut(s) 79
DpnI GATC 6 cut(s) 715, 739, 788, 914, 951, 1021
DpnII GATC 6 cut(s) 713, 737, 786, 912, 949, 1019
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco130I CCWWGG 2 cut(s) 772, 922
Eco147I AGGCCT 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 249
Eco32I GATATC 1 cut(s) 858
Eco47I GGWCC 1 cut(s) 435
Eco81I CCTNAGG 2 cut(s) 73, 475
Eco91I GGTNACC 1 cut(s) 108
EcoO65I GGTNACC 1 cut(s) 108
EcoRV GATATC 1 cut(s) 858
EcoT14I CCWWGG 2 cut(s) 772, 922
EcoT38I GRGCYC 1 cut(s) 249
EgeI GGCGCC 1 cut(s) 79
EheI GGCGCC 1 cut(s) 79
ErhI CCWWGG 2 cut(s) 772, 922
FaeI CATG 7 cut(s) 20, 320, 588, 606, 660, 672, 919
FaqI GGGAC 3 cut(s) 224, 434, 448
FatI CATG 7 cut(s) 16, 316, 584, 602, 656, 668, 915
FauI CCCGC 1 cut(s) 895
FbaI TGATCA 1 cut(s) 912
Fnu4HI GCNGC 7 cut(s) 81, 103, 153, 424, 519, 960, 1113
FokI GGATG 2 cut(s) 353, 1172
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 7 cut(s) 81, 103, 153, 424, 519, 960, 1113
FspBI CTAG 1 cut(s) 86
GlaI GCGC 1 cut(s) 79
GluI GCNGC 7 cut(s) 81, 103, 153, 424, 519, 960, 1113
GsuI CTGGAG 1 cut(s) 634
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 4 cut(s) 48, 123, 300, 920
HapII CCGG 3 cut(s) 106, 242, 294
HhaI GCGC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 7 cut(s) 20, 320, 588, 606, 660, 672, 919
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HinfI GANTC 5 cut(s) 404, 530, 616, 796, 1148
HpaII CCGG 3 cut(s) 106, 242, 294
HphI GGTGA 7 cut(s) 22, 102, 159, 253, 841, 847, 922
Hpy166II GTNNAC 3 cut(s) 193, 730, 795
Hpy188I TCNGA 6 cut(s) 274, 414, 529, 718, 801, 868
Hpy188III TCNNGA 4 cut(s) 41, 477, 613, 1023
Hpy8I GTNNAC 3 cut(s) 193, 730, 795
HpyAV CCTTC 2 cut(s) 232, 840
HpyCH4III ACNGT 4 cut(s) 265, 488, 809, 1227
HpyCH4IV ACGT 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 86, 306, 631
HpyF3I CTNAG 3 cut(s) 73, 475, 696
HpySE526I ACGT 1 cut(s) 269
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 7 cut(s) 20, 320, 588, 606, 660, 672, 919
HspAI GCGC 1 cut(s) 78
KasI GGCGCC 1 cut(s) 77
Ksp22I TGATCA 1 cut(s) 912
Kzo9I GATC 6 cut(s) 713, 737, 786, 912, 949, 1019
LmnI GCTCC 4 cut(s) 244, 470, 639, 939
Lsp1109I GCAGC 6 cut(s) 114, 139, 435, 505, 971, 1099
LweI GCATC 2 cut(s) 55, 889
MaeI CTAG 1 cut(s) 86
MaeII ACGT 1 cut(s) 269
MaeIII GTNAC 5 cut(s) 108, 265, 405, 535, 766
MalI GATC 6 cut(s) 715, 739, 788, 914, 951, 1021
MboI GATC 6 cut(s) 713, 737, 786, 912, 949, 1019
MboII GAAGA 6 cut(s) 151, 204, 506, 881, 1035, 1106
MfeI CAATTG 2 cut(s) 129, 202
MflI RGATCY 1 cut(s) 1019
MhlI GDGCHC 2 cut(s) 249, 348
Mly113I GGCGCC 1 cut(s) 78
MlyI GAGTC 3 cut(s) 413, 625, 790
MmeI TCCRAC 1 cut(s) 730
MslI CAYNNNNRTG 2 cut(s) 810, 1139
MspI CCGG 3 cut(s) 106, 242, 294
MspR9I CCNGG 1 cut(s) 242
MunI CAATTG 2 cut(s) 129, 202
MvnI CGCG 1 cut(s) 791
MwoI GCNNNNNNNGC 4 cut(s) 65, 86, 306, 631
NarI GGCGCC 1 cut(s) 78
NciI CCSGG 1 cut(s) 242
NdeII GATC 6 cut(s) 713, 737, 786, 912, 949, 1019
NlaIII CATG 7 cut(s) 20, 320, 588, 606, 660, 672, 919
NlaIV GGNNCC 5 cut(s) 49, 79, 246, 436, 472
NmeAIII GCCGAG 1 cut(s) 143
NmuCI GTSAC 5 cut(s) 108, 265, 405, 535, 766
NspI RCATGY 1 cut(s) 606
OliI CACNNNNGTG 1 cut(s) 810
PceI AGGCCT 1 cut(s) 123
PciI ACATGT 1 cut(s) 602
PfeI GAWTC 2 cut(s) 530, 1148
PfoI TCCNGGA 1 cut(s) 240
PkrI GCNGC 7 cut(s) 82, 104, 154, 425, 520, 961, 1114
PleI GAGTC 3 cut(s) 412, 624, 790
PluTI GGCGCC 1 cut(s) 81
PpsI GAGTC 3 cut(s) 412, 624, 790
PscI ACATGT 1 cut(s) 602
PspEI GGTNACC 1 cut(s) 108
PspN4I GGNNCC 5 cut(s) 49, 79, 246, 436, 472
PspPI GGNCC 3 cut(s) 47, 435, 919
PstNI CAGNNNCTG 1 cut(s) 539
PsuI RGATCY 1 cut(s) 1019
RsaI GTAC 2 cut(s) 643, 729
RsaNI GTAC 2 cut(s) 642, 728
RseI CAYNNNNRTG 2 cut(s) 810, 1139
SatI GCNGC 7 cut(s) 81, 103, 153, 424, 519, 960, 1113
Sau3AI GATC 6 cut(s) 713, 737, 786, 912, 949, 1019
Sau96I GGNCC 3 cut(s) 47, 435, 919
SchI GAGTC 3 cut(s) 413, 625, 790
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 2 cut(s) 249, 348
SetI ASST 9 cut(s) 38, 198, 234, 272, 465, 515, 912, 964, 1210
SfaNI GCATC 2 cut(s) 55, 889
SfcI CTRYAG 1 cut(s) 963
SfoI GGCGCC 1 cut(s) 79
SinI GGWCC 1 cut(s) 435
SmiMI CAYNNNNRTG 2 cut(s) 810, 1139
SmlI CTYRAG 1 cut(s) 1190
SmoI CTYRAG 1 cut(s) 1190
SseBI AGGCCT 1 cut(s) 123
SsiI CCGC 2 cut(s) 81, 902
SspDI GGCGCC 1 cut(s) 77
SspI AATATT 1 cut(s) 1083
SspMI CTAG 1 cut(s) 86
StuI AGGCCT 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 240
StyI CCWWGG 2 cut(s) 772, 922
TaaI ACNGT 4 cut(s) 265, 488, 809, 1227
TaiI ACGT 1 cut(s) 272
TatI WGTACW 1 cut(s) 727
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 2 cut(s) 530, 1148
TscAI CASTG 8 cut(s) 181, 316, 400, 493, 540, 747, 784, 1232
TseFI GTSAC 5 cut(s) 108, 265, 405, 535, 766
TseI GCWGC 6 cut(s) 102, 152, 423, 518, 959, 1112
Tsp45I GTSAC 5 cut(s) 108, 265, 405, 535, 766
TspDTI ATGAA 3 cut(s) 33, 657, 1076
TspGWI ACGGA 1 cut(s) 1032
TspRI CASTG 8 cut(s) 181, 316, 400, 493, 540, 747, 784, 1232
VpaK11BI GGWCC 1 cut(s) 435
XapI RAATTY 3 cut(s) 321, 608, 850
XceI RCATGY 1 cut(s) 606
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.