Prupe.4G183500_v2.0.a1

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0021209
Physical Location & Seq
Reverse (-)
10874329 .. 10879071
4743 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G183500.1

Sequence Viewer

Length: 1485 bp
ATGGCTTTTGCAGTCTTCAAACTCTTGAAGAGGCACCAAAACCTCGCTGCAGATGTATCCCCAATCAAATTTGACTGCAGAGCAAGGCACACTGCCAACACAAGAAATCTCTTCTCAAGAATCAGTCCTCTTGGGGACCCTTCTCTCAGTGTCGTCCCAGTTCTTGACCAGTGGGTTCAAGAAGGCGGAAAAGTCAATTACTTTGAGCTCCAGCGGATCGTTCGAGACCTCCGGGCCCGAAAGCGATACAGGCATGCCCTTGATGTTTCTGAATGGATGAGTAGCAAAGGCCTGTGCCAATTTTTACCCGGTGACCATGCCGTGCAGCTTGATCTCATCGGTAGAGTTCGTGGTCTAGATGCTGCAGAGAGCTGCTTTAGTAGCTTGAGTGATGAGGATACTAGCAAAAGTTATGGTGCACTTCTAAATTGTTATGTGAGAGAAGGCCTCATTGATAAGTCTCTCTCTTATATGCAGAAGATGAAAGAGTTGGGTTTTGCTACCTCTCTCAACTACAATGACATTATGCGTCTTTATATACATACTGGCCAGCCTGAGAAAATCCCGGATGTGCTATCAGAGATGAAAGAGGAGGGTGTTTCTCCTGACAATTTTAGCTACAGAATTTGCATGAGCTCTTACGGAATGAGATCTGATATAAGTAGCATGGAGAAAGTTTTGGAAGAAATGGAGAGGGAACCACACATCTCCATGGATTGGCTTACTTATGCTTTGGTAGCCAATTTATACATTAAAGCAGGTCTCCATGACAAAGCATTGATCTACCTGGAAAAGAGTGAAGAGAAGGTAAATAAAGATGCGCTTGGCTACAATCATCTAATTTCACTTTACGCAAGCCTGGGATGTAAAGATGACATGATGAGATTGTGGAGCCTTGAAAAAACCAAGTGCAAGAAGCAAATCAACAGGGATTACATTACCATGCTTGGTTCTCTTGTGAAGCTTGGGGAGCTTGAAGAGACAAAAAAATTGCTAGATGAGTGGGAGTTATCATGTCTCTCTTATGATTTCCGAGTGCCAAATATCCTCCTAATCGGATATTGTCAAAAGGGGTTGGTTGAACAAGCTGAAGACACTCTTCGAGACATTGTCAAAAAAGGCAAGACTCCAACTCCAAATAGTTGGGCAATTCTTGCTGCAGGATATGTGGACAAGCAGAAGATGCAGAAGGCTTTTGAGTGCATGACGGAAGCTCTGAATTTACGGGCAAGAAACACAGGATGGAGGCCGAAACCTGGTGTGGTTTCCAGTGTATTGAGTTGGATTGGAGACAATGGAGACATTGAACAAGTAGAAGCCTTTGTAAGCTTAATGAAGACTGTGATTACAGTAAATAGGGAAATGTACCATGCCTTGATGAAGGCATACATCAGATGTGGAAAAGAAGTGGAAGGGCTTTTACACAGCATGAAAGAAGATCAAATAGAGGCCGATGATGAAATCCTAAGCTTACGACAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

495

Amino Acids

56.39

Weight (kDa)

6.59

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021209)

Species Orthologous Gene IDs
malus_domestica MD11G1245200.v1.1
prunus_persica Prupe.4G183500_v2.0.a1 Prupe.4G183500_v2.0.a1 Prupe.4G183500_v2.0.a1
pyrus_communis pycom11g21740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 749
AccB1I GGYRCC 1 cut(s) 33
AccB7I CCANNNNNTGG 1 cut(s) 717
AciI CCGC 2 cut(s) 186, 214
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 547
AcsI RAATTY 3 cut(s) 68, 624, 1219
AcuI CTGAAG 1 cut(s) 1110
AfaI GTAC 1 cut(s) 1367
AfiI CCNNNNNNNGG 2 cut(s) 717, 1256
AgsI TTSAA 7 cut(s) 19, 28, 179, 899, 977, 1082, 1307
AjnI CCWGG 3 cut(s) 786, 858, 1255
Alw21I GWGCWC 3 cut(s) 210, 421, 638
Alw26I GTCTC 8 cut(s) 219, 465, 767, 974, 1022, 1098, 1284, 1293
Alw44I GTGCAC 1 cut(s) 417
AlwI GGATC 1 cut(s) 224
AoxI GGCC 6 cut(s) 234, 289, 445, 547, 1247, 1449
ApaI GGGCCC 1 cut(s) 238
ApaLI GTGCAC 1 cut(s) 417
ApeKI GCWGC 5 cut(s) 47, 325, 362, 372, 1157
ApoI RAATTY 3 cut(s) 68, 624, 1219
AspLEI GCGC 1 cut(s) 823
AspS9I GGNCC 3 cut(s) 136, 234, 235
AsuC2I CCSGG 3 cut(s) 233, 309, 566
AsuHPI GGTGA 1 cut(s) 323
AvaII GGWCC 1 cut(s) 136
BaeGI GKGCMC 2 cut(s) 238, 421
BalI TGGCCA 1 cut(s) 549
BanI GGYRCC 1 cut(s) 33
BanII GRGCYC 3 cut(s) 210, 238, 638
BarI GAAGNNNNNNTAC 2 cut(s) 1404, 1436
BbsI GAAGAC 3 cut(s) 7, 1098, 1343
Bbv12I GWGCWC 3 cut(s) 210, 421, 638
BbvI GCAGC 5 cut(s) 34, 337, 349, 359, 1144
BccI CCATC 1 cut(s) 1236
BceAI ACGGC 1 cut(s) 305
BciT130I CCWGG 3 cut(s) 788, 860, 1257
BciVI GTATCC 2 cut(s) 67, 391
BcnI CCSGG 3 cut(s) 233, 309, 566
BcoDI GTCTC 8 cut(s) 219, 465, 767, 974, 1022, 1098, 1284, 1293
BfaI CTAG 3 cut(s) 356, 402, 995
BfmI CTRYAG 5 cut(s) 48, 76, 363, 619, 1158
BfuAI ACCTGC 1 cut(s) 749
BfuI GTATCC 2 cut(s) 67, 391
BglII AGATCT 1 cut(s) 650
BisI GCNGC 5 cut(s) 48, 326, 363, 373, 1158
BlsI GCNGC 5 cut(s) 49, 327, 364, 374, 1159
Bme1390I CCNGG 6 cut(s) 233, 309, 566, 788, 860, 1257
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 3 cut(s) 136, 234, 235
BmiI GGNNCC 6 cut(s) 35, 137, 138, 236, 699, 893
BmrFI CCNGG 6 cut(s) 233, 309, 566, 788, 860, 1257
BmrI ACTGGG 1 cut(s) 152
BmsI GCATC 3 cut(s) 349, 808, 1173
BmuI ACTGGG 1 cut(s) 152
BpiI GAAGAC 3 cut(s) 7, 1098, 1343
BplI GAGNNNNNCTC 2 cut(s) 432, 464
BpmI CTGGAG 1 cut(s) 194
Bpu10I CCTNAGC 1 cut(s) 1466
BpuEI CTTGAG 2 cut(s) 100, 406
BpuMI CCSGG 3 cut(s) 233, 309, 566
BsaI GGTCTC 2 cut(s) 219, 767
BsaJI CCNNGG 2 cut(s) 711, 859
BsaXI ACNNNNNCTCC 2 cut(s) 1117, 1147
Bsc4I CCNNNNNNNGG 2 cut(s) 717, 1256
Bse1I ACTGG 4 cut(s) 158, 169, 550, 1269
BseBI CCWGG 3 cut(s) 788, 860, 1257
BseDI CCNNGG 2 cut(s) 711, 859
BseGI GGATG 4 cut(s) 282, 574, 869, 1247
BseLI CCNNNNNNNGG 2 cut(s) 717, 1256
BseMII CTCAG 2 cut(s) 160, 546
BseNI ACTGG 4 cut(s) 158, 169, 550, 1269
BseRI GAGGAG 1 cut(s) 605
BseSI GKGCMC 2 cut(s) 238, 421
BseXI GCAGC 5 cut(s) 34, 337, 349, 359, 1144
BsgI GTGCAG 1 cut(s) 344
BshFI GGCC 6 cut(s) 236, 291, 447, 549, 1249, 1451
BshNI GGYRCC 1 cut(s) 33
BsiHKAI GWGCWC 3 cut(s) 210, 421, 638
BsiSI CCGG 3 cut(s) 232, 309, 566
BslFI GGGAC 2 cut(s) 140, 149
BslI CCNNNNNNNGG 2 cut(s) 717, 1256
BsmAI GTCTC 8 cut(s) 219, 465, 767, 974, 1022, 1098, 1284, 1293
BsmFI GGGAC 2 cut(s) 140, 149
BsnI GGCC 6 cut(s) 236, 291, 447, 549, 1249, 1451
Bso31I GGTCTC 2 cut(s) 219, 767
Bsp120I GGGCCC 1 cut(s) 234
Bsp1286I GDGCHC 4 cut(s) 210, 238, 421, 638
Bsp143I GATC 5 cut(s) 216, 331, 650, 780, 1438
Bsp19I CCATGG 1 cut(s) 711
BspACI CCGC 2 cut(s) 186, 214
BspANI GGCC 6 cut(s) 236, 291, 447, 549, 1249, 1451
BspCNI CTCAG 2 cut(s) 159, 547
BspLI GGNNCC 6 cut(s) 35, 137, 138, 236, 699, 893
BspMAI CTGCAG 4 cut(s) 52, 80, 367, 1162
BspMI ACCTGC 1 cut(s) 749
BspPI GGATC 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 33
BspTNI GGTCTC 2 cut(s) 219, 767
BsrI ACTGG 4 cut(s) 158, 169, 550, 1269
BssECI CCNNGG 2 cut(s) 711, 859
BssMI GATC 5 cut(s) 216, 331, 650, 780, 1438
BssT1I CCWWGG 1 cut(s) 711
Bst2UI CCWGG 3 cut(s) 788, 860, 1257
Bst4CI ACNGT 2 cut(s) 1342, 1351
Bst6I CTCTTC 5 cut(s) 23, 116, 795, 972, 1104
BstAPI GCANNNNNTGC 2 cut(s) 1154, 1183
BstC8I GCNNGC 3 cut(s) 255, 551, 856
BstDEI CTNAG 3 cut(s) 146, 555, 1466
BstDSI CCRYGG 1 cut(s) 711
BstEII GGTNACC 1 cut(s) 311
BstF5I GGATG 4 cut(s) 282, 574, 869, 1247
BstHHI GCGC 1 cut(s) 823
BstKTI GATC 5 cut(s) 219, 334, 653, 783, 1441
BstMAI GTCTC 8 cut(s) 219, 465, 767, 974, 1022, 1098, 1284, 1293
BstMBI GATC 5 cut(s) 216, 331, 650, 780, 1438
BstMWI GCNNNNNNNGC 6 cut(s) 250, 381, 737, 970, 1154, 1183
BstNI CCWGG 3 cut(s) 788, 860, 1257
BstNSI RCATGY 1 cut(s) 257
BstPI GGTNACC 1 cut(s) 311
BstSCI CCNGG 6 cut(s) 231, 307, 564, 786, 858, 1255
BstSFI CTRYAG 5 cut(s) 48, 76, 363, 619, 1158
BstSLI GKGCMC 2 cut(s) 238, 421
BstV1I GCAGC 5 cut(s) 34, 337, 349, 359, 1144
BstV2I GAAGAC 3 cut(s) 7, 1098, 1343
BstX2I RGATCY 1 cut(s) 650
BstXI CCANNNNNNTGG 1 cut(s) 1143
BstYI RGATCY 1 cut(s) 650
BsuI GTATCC 2 cut(s) 67, 391
BsuRI GGCC 6 cut(s) 236, 291, 447, 549, 1249, 1451
BtgI CCRYGG 1 cut(s) 711
BtsCI GGATG 4 cut(s) 282, 574, 869, 1247
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 4 cut(s) 90, 154, 176, 1276
BveI ACCTGC 1 cut(s) 749
Cac8I GCNNGC 3 cut(s) 255, 551, 856
CfoI GCGC 1 cut(s) 823
Cfr13I GGNCC 3 cut(s) 136, 234, 235
CseI GACGC 1 cut(s) 518
CsiI ACCWGGT 1 cut(s) 1255
Csp6I GTAC 1 cut(s) 1366
CviQI GTAC 1 cut(s) 1366
DdeI CTNAG 3 cut(s) 146, 555, 1466
DpnI GATC 5 cut(s) 218, 333, 652, 782, 1440
DpnII GATC 5 cut(s) 216, 331, 650, 780, 1438
EaeI YGGCCR 1 cut(s) 547
Eam1104I CTCTTC 5 cut(s) 23, 116, 795, 972, 1104
EarI CTCTTC 5 cut(s) 23, 116, 795, 972, 1104
EciI GGCGGA 1 cut(s) 201
Ecl136II GAGCTC 2 cut(s) 208, 636
Eco130I CCWWGG 1 cut(s) 711
Eco147I AGGCCT 2 cut(s) 291, 447
Eco24I GRGCYC 3 cut(s) 210, 238, 638
Eco31I GGTCTC 2 cut(s) 219, 767
Eco47I GGWCC 1 cut(s) 136
Eco53kI GAGCTC 2 cut(s) 208, 636
Eco57I CTGAAG 1 cut(s) 1110
Eco91I GGTNACC 1 cut(s) 311
EcoICRI GAGCTC 2 cut(s) 208, 636
EcoO109I RGGNCCY 1 cut(s) 136
EcoO65I GGTNACC 1 cut(s) 311
EcoRII CCWGG 3 cut(s) 786, 858, 1255
EcoT14I CCWWGG 1 cut(s) 711
EcoT38I GRGCYC 3 cut(s) 210, 238, 638
ErhI CCWWGG 1 cut(s) 711
FalI AAGNNNNNCTT 4 cut(s) 807, 839, 1083, 1115
FaqI GGGAC 2 cut(s) 140, 149
Fnu4HI GCNGC 5 cut(s) 48, 326, 363, 373, 1158
FokI GGATG 4 cut(s) 289, 581, 876, 1254
FriOI GRGCYC 3 cut(s) 210, 238, 638
Fsp4HI GCNGC 5 cut(s) 48, 326, 363, 373, 1158
FspBI CTAG 3 cut(s) 356, 402, 995
GlaI GCGC 1 cut(s) 822
GluI GCNGC 5 cut(s) 48, 326, 363, 373, 1158
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 6 cut(s) 236, 291, 447, 549, 1249, 1451
HapII CCGG 3 cut(s) 232, 309, 566
HgaI GACGC 1 cut(s) 518
HhaI GCGC 1 cut(s) 823
Hin6I GCGC 1 cut(s) 821
HinP1I GCGC 1 cut(s) 821
HindIII AAGCTT 3 cut(s) 962, 1327, 1468
HinfI GANTC 2 cut(s) 120, 1126
HpaII CCGG 3 cut(s) 232, 309, 566
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 2 cut(s) 419, 1171
Hpy188I TCNGA 7 cut(s) 271, 580, 655, 1034, 1058, 1218, 1394
Hpy188III TCNNGA 8 cut(s) 25, 117, 164, 179, 224, 356, 605, 1103
Hpy8I GTNNAC 2 cut(s) 419, 1171
HpyAV CCTTC 7 cut(s) 150, 176, 437, 799, 1183, 1375, 1406
HpyCH4III ACNGT 2 cut(s) 1342, 1351
HpyF10VI GCNNNNNNNGC 6 cut(s) 250, 381, 737, 970, 1154, 1183
HpyF3I CTNAG 3 cut(s) 146, 555, 1466
HspAI GCGC 1 cut(s) 821
KflI GGGWCCC 1 cut(s) 136
Kzo9I GATC 5 cut(s) 216, 331, 650, 780, 1438
LmnI GCTCC 3 cut(s) 213, 891, 970
Lsp1109I GCAGC 5 cut(s) 34, 337, 349, 359, 1144
LweI GCATC 3 cut(s) 349, 808, 1173
MabI ACCWGGT 1 cut(s) 1255
MaeI CTAG 3 cut(s) 356, 402, 995
MaeIII GTNAC 1 cut(s) 311
MalI GATC 5 cut(s) 218, 333, 652, 782, 1440
MboI GATC 5 cut(s) 216, 331, 650, 780, 1438
MflI RGATCY 1 cut(s) 650
MhlI GDGCHC 4 cut(s) 210, 238, 421, 638
MlsI TGGCCA 1 cut(s) 549
MluNI TGGCCA 1 cut(s) 549
MlyI GAGTC 1 cut(s) 1120
MmeI TCCRAC 2 cut(s) 1154, 1262
Mox20I TGGCCA 1 cut(s) 549
MscI TGGCCA 1 cut(s) 549
MseI TTAA 2 cut(s) 753, 1331
MslI CAYNNNNRTG 2 cut(s) 710, 941
Msp20I TGGCCA 1 cut(s) 549
MspA1I CMGCKG 1 cut(s) 214
MspI CCGG 3 cut(s) 232, 309, 566
MspR9I CCNGG 6 cut(s) 233, 309, 566, 788, 860, 1257
MvaI CCWGG 3 cut(s) 788, 860, 1257
MwoI GCNNNNNNNGC 6 cut(s) 250, 381, 737, 970, 1154, 1183
NciI CCSGG 3 cut(s) 233, 309, 566
NcoI CCATGG 1 cut(s) 711
NdeII GATC 5 cut(s) 216, 331, 650, 780, 1438
NlaIV GGNNCC 6 cut(s) 35, 137, 138, 236, 699, 893
NmuCI GTSAC 1 cut(s) 311
NspI RCATGY 1 cut(s) 257
PaeI GCATGC 1 cut(s) 257
PceI AGGCCT 2 cut(s) 291, 447
PfeI GAWTC 1 cut(s) 120
PflFI GACNNNGTC 1 cut(s) 1109
PflMI CCANNNNNTGG 1 cut(s) 717
PfoI TCCNGGA 1 cut(s) 564
PkrI GCNGC 5 cut(s) 49, 327, 364, 374, 1159
PleI GAGTC 1 cut(s) 1120
PpsI GAGTC 1 cut(s) 1120
PpuMI RGGWCCY 1 cut(s) 136
Psp124BI GAGCTC 2 cut(s) 210, 638
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 3 cut(s) 786, 858, 1255
PspEI GGTNACC 1 cut(s) 311
PspGI CCWGG 3 cut(s) 786, 858, 1255
PspN4I GGNNCC 6 cut(s) 35, 137, 138, 236, 699, 893
PspOMI GGGCCC 1 cut(s) 234
PspPI GGNCC 3 cut(s) 136, 234, 235
PspPPI RGGWCCY 1 cut(s) 136
PstI CTGCAG 4 cut(s) 52, 80, 367, 1162
PsuI RGATCY 1 cut(s) 650
PsyI GACNNNGTC 1 cut(s) 1109
RsaI GTAC 1 cut(s) 1367
RsaNI GTAC 1 cut(s) 1366
RseI CAYNNNNRTG 2 cut(s) 710, 941
SacI GAGCTC 2 cut(s) 210, 638
SaqAI TTAA 2 cut(s) 753, 1331
SatI GCNGC 5 cut(s) 48, 326, 363, 373, 1158
Sau3AI GATC 5 cut(s) 216, 331, 650, 780, 1438
Sau96I GGNCC 3 cut(s) 136, 234, 235
SchI GAGTC 1 cut(s) 1120
ScrFI CCNGG 6 cut(s) 233, 309, 566, 788, 860, 1257
SduI GDGCHC 4 cut(s) 210, 238, 421, 638
SexAI ACCWGGT 1 cut(s) 1255
SfaNI GCATC 3 cut(s) 349, 808, 1173
SfcI CTRYAG 5 cut(s) 48, 76, 363, 619, 1158
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 2 cut(s) 710, 941
SmlI CTYRAG 2 cut(s) 115, 385
SmoI CTYRAG 2 cut(s) 115, 385
SphI GCATGC 1 cut(s) 257
SseBI AGGCCT 2 cut(s) 291, 447
SsiI CCGC 2 cut(s) 186, 214
SspMI CTAG 3 cut(s) 356, 402, 995
SstI GAGCTC 2 cut(s) 210, 638
StuI AGGCCT 2 cut(s) 291, 447
StyD4I CCNGG 6 cut(s) 231, 307, 564, 786, 858, 1255
StyI CCWWGG 1 cut(s) 711
TaaI ACNGT 2 cut(s) 1342, 1351
TaqI TCGA 2 cut(s) 223, 1102
TfiI GAWTC 1 cut(s) 120
Tru1I TTAA 2 cut(s) 753, 1331
Tru9I TTAA 2 cut(s) 753, 1331
TscAI CASTG 4 cut(s) 97, 154, 176, 1276
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 5 cut(s) 47, 325, 362, 372, 1157
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 6 cut(s) 497, 599, 1349, 1394, 1445, 1473
TspGWI ACGGA 2 cut(s) 657, 1223
TspRI CASTG 4 cut(s) 97, 154, 176, 1276
Tth111I GACNNNGTC 1 cut(s) 1109
Van91I CCANNNNNTGG 1 cut(s) 717
VneI GTGCAC 1 cut(s) 417
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 3 cut(s) 68, 624, 1219
XbaI TCTAGA 1 cut(s) 355
XceI RCATGY 1 cut(s) 257
XspI CTAG 3 cut(s) 356, 402, 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.