Prupe.4G242500_v2.0.a1

DEK C terminal domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
16006115 .. 16007574
1460 bp
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UTR
Exon/CDS
Intron
Prupe.4G242500.1

Sequence Viewer

Length: 207 bp
ATGGGTGAGGAAGACACGGTGACCAATGGCACTGAAACAGTCGCGAATGGGACTAGCCAGTCAGGGAAAACCAGTGAAGATGTGACTGATAAAAAAGGGAAGGAAAATGTCGGGGTAAAGGAAATGGATGTAGATAAGAAAGGTGACAAGAAAGCTGAAGTGGAGAAAATGGATGAAGACCTAGAGGCCAATGGATGCAAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.22

Weight (kDa)

4.49

Isoelectric Point (pI)

11.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029048)

Species Orthologous Gene IDs
prunus_persica Prupe.4G242500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0053751

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 58
AccII CGCG 1 cut(s) 44
AcuI CTGAAG 1 cut(s) 177
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
AoxI GGCC 1 cut(s) 186
AsuHPI GGTGA 3 cut(s) 17, 31, 155
BbsI GAAGAC 2 cut(s) 18, 183
BfaI CTAG 2 cut(s) 54, 182
BmsI GCATC 1 cut(s) 185
BpiI GAAGAC 2 cut(s) 18, 183
Bse1I ACTGG 2 cut(s) 58, 72
BseGI GGATG 3 cut(s) 133, 178, 200
BseNI ACTGG 2 cut(s) 58, 72
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 1 cut(s) 188
BslFI GGGAC 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 1 cut(s) 188
Bsp68I TCGCGA 1 cut(s) 44
BspANI GGCC 1 cut(s) 188
BspFNI CGCG 1 cut(s) 44
BsrI ACTGG 2 cut(s) 58, 72
Bst4CI ACNGT 2 cut(s) 19, 40
BstEII GGTNACC 1 cut(s) 19
BstF5I GGATG 3 cut(s) 133, 178, 200
BstFNI CGCG 1 cut(s) 44
BstPI GGTNACC 1 cut(s) 19
BstUI CGCG 1 cut(s) 44
BstV2I GAAGAC 2 cut(s) 18, 183
BsuRI GGCC 1 cut(s) 188
BtsCI GGATG 3 cut(s) 133, 178, 200
BtsIMutI CAGTG 2 cut(s) 30, 79
BtuMI TCGCGA 1 cut(s) 44
CviJI RGCY 3 cut(s) 57, 155, 188
CviKI_1 RGCY 3 cut(s) 57, 155, 188
DrdI GACNNNNNNGTC 1 cut(s) 58
DseDI GACNNNNNNGTC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 177
Eco91I GGTNACC 1 cut(s) 19
EcoO65I GGTNACC 1 cut(s) 19
FaqI GGGAC 1 cut(s) 64
FokI GGATG 2 cut(s) 140, 185
FspBI CTAG 2 cut(s) 54, 182
HaeIII GGCC 1 cut(s) 188
HphI GGTGA 3 cut(s) 17, 31, 155
Hpy188III TCNNGA 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 2 cut(s) 19, 40
HpyCH4V TGCA 1 cut(s) 198
LpnPI CCDG 3 cut(s) 48, 71, 85
LweI GCATC 1 cut(s) 185
MaeI CTAG 2 cut(s) 54, 182
MaeIII GTNAC 3 cut(s) 19, 82, 143
MboII GAAGA 3 cut(s) 23, 89, 188
MnlI CCTC 1 cut(s) 178
MvnI CGCG 1 cut(s) 44
NmuCI GTSAC 3 cut(s) 19, 82, 143
NruI TCGCGA 1 cut(s) 44
PspEI GGTNACC 1 cut(s) 19
RruI TCGCGA 1 cut(s) 44
SetI ASST 3 cut(s) 145, 157, 183
SfaNI GCATC 1 cut(s) 185
SgeI CNNG 9 cut(s) 28, 55, 66, 70, 75, 84, 124, 160, 194
SspMI CTAG 2 cut(s) 54, 182
TaaI ACNGT 2 cut(s) 19, 40
TscAI CASTG 2 cut(s) 37, 79
TseFI GTSAC 3 cut(s) 19, 82, 143
Tsp45I GTSAC 3 cut(s) 19, 82, 143
TspDTI ATGAA 1 cut(s) 189
TspRI CASTG 2 cut(s) 37, 79
XspI CTAG 2 cut(s) 54, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.