Prupe.4G264300_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0027087
Physical Location & Seq
Forward (+)
19478805 .. 19479736
932 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G264300.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 477 bp
ATGCTGGCAGCTCCTTCAAAAATATGGGAAGGAGGACAATCATCAGGATATTTTGCAATGGTTGGCGACTGGGTTATGGAGGTTAGGGAAGAATCGAAATGCTGCAATTTTCGAGGGGCATCATATATACACCCACAAGATATTGCTCTCAGATGTCAAAAGCAAATTGTAGAGTTTGTGGTAGCAGGACAGGCAAGTATACCGCTTATACATGATCAACCGAGACCTCCAGAGTGGGATCGTAGTGACTTCCAGATATGGCAGAAACCGGCTGATGGTTGGATGAAATTTAATTGCGATGGTGCTTGGACGCAAGCGCACATGAAGGGTGGAGCAAGATGGGTGGCTCGAGACAGTAATGGCTGGATGGAGATGGCAGGGGGTGTGTGGGTTTTCGTGCCAGTCGGCTTTGGCTGTGGAAGTGGAAGCAGTGCCAGAGGCGGTGACGGGGTTTGGAGGCGTGGGTTACTAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

159

Amino Acids

17.48

Weight (kDa)

6.81

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0027087)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43755
prunus_persica Prupe.4G264300_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 199
AciI CCGC 2 cut(s) 203, 441
AclWI GGATC 1 cut(s) 246
AcsI RAATTY 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 1 cut(s) 18
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw26I GTCTC 2 cut(s) 217, 345
AlwI GGATC 1 cut(s) 246
Ama87I CYCGRG 1 cut(s) 348
ApeKI GCWGC 2 cut(s) 8, 102
ApoI RAATTY 1 cut(s) 287
AspLEI GCGC 1 cut(s) 319
AsuHPI GGTGA 1 cut(s) 455
AvaI CYCGRG 1 cut(s) 348
BbvI GCAGC 2 cut(s) 20, 89
BccI CCATC 5 cut(s) 269, 293, 333, 361, 367
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 2 cut(s) 217, 345
BfaI CTAG 1 cut(s) 470
BisI GCNGC 2 cut(s) 9, 103
BlsI GCNGC 2 cut(s) 10, 104
BmeT110I CYCGRG 1 cut(s) 348
BmrI ACTGGG 1 cut(s) 79
BmsI GCATC 1 cut(s) 128
BmuI ACTGGG 1 cut(s) 79
BpmI CTGGAG 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 217
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse118I RCCGGY 1 cut(s) 268
Bse1I ACTGG 2 cut(s) 74, 401
Bse3DI GCAATG 1 cut(s) 63
BseGI GGATG 2 cut(s) 288, 372
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 2 cut(s) 74, 401
BseXI GCAGC 2 cut(s) 20, 89
BsiHKCI CYCGRG 1 cut(s) 348
BsiSI CCGG 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 2 cut(s) 217, 345
Bso31I GGTCTC 1 cut(s) 217
BsoBI CYCGRG 1 cut(s) 348
Bsp143I GATC 2 cut(s) 214, 238
BspACI CCGC 2 cut(s) 203, 441
BspCNI CTCAG 1 cut(s) 162
BspPI GGATC 1 cut(s) 246
BspTNI GGTCTC 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 63
BsrFI RCCGGY 1 cut(s) 268
BsrI ACTGG 2 cut(s) 74, 401
BssAI RCCGGY 1 cut(s) 268
BssMI GATC 2 cut(s) 214, 238
BssNAI GTATAC 1 cut(s) 200
Bst1107I GTATAC 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 356
BstC8I GCNNGC 2 cut(s) 6, 315
BstDEI CTNAG 1 cut(s) 149
BstF5I GGATG 2 cut(s) 288, 372
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 2 cut(s) 217, 241
BstMAI GTCTC 2 cut(s) 217, 345
BstMBI GATC 2 cut(s) 214, 238
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstV1I GCAGC 2 cut(s) 20, 89
BstZ17I GTATAC 1 cut(s) 200
BtgZI GCGATG 1 cut(s) 312
BtsCI GGATG 2 cut(s) 288, 372
BtsI GCAGTG 1 cut(s) 436
BtsIMutI CAGTG 1 cut(s) 436
Cac8I GCNNGC 2 cut(s) 6, 315
CfoI GCGC 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 268
CseI GACGC 1 cut(s) 319
CspCI CAANNNNNGTGG 2 cut(s) 324, 359
CviAII CATG 2 cut(s) 212, 322
CviJI RGCY 6 cut(s) 11, 272, 347, 363, 408, 414
CviKI_1 RGCY 6 cut(s) 11, 272, 347, 363, 408, 414
DdeI CTNAG 1 cut(s) 149
DpnI GATC 2 cut(s) 216, 240
DpnII GATC 2 cut(s) 214, 238
Eco31I GGTCTC 1 cut(s) 217
Eco88I CYCGRG 1 cut(s) 348
FaeI CATG 2 cut(s) 215, 325
FatI CATG 2 cut(s) 211, 321
FbaI TGATCA 1 cut(s) 214
FblI GTMKAC 1 cut(s) 199
Fnu4HI GCNGC 2 cut(s) 9, 103
FokI GGATG 2 cut(s) 295, 379
Fsp4HI GCNGC 2 cut(s) 9, 103
FspBI CTAG 1 cut(s) 470
GlaI GCGC 1 cut(s) 318
GluI GCNGC 2 cut(s) 9, 103
GsuI CTGGAG 1 cut(s) 213
HapII CCGG 1 cut(s) 269
HgaI GACGC 1 cut(s) 319
HhaI GCGC 1 cut(s) 319
Hin1II CATG 2 cut(s) 215, 325
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HinfI GANTC 1 cut(s) 92
HpaII CCGG 1 cut(s) 269
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 152
Hpy188III TCNNGA 4 cut(s) 45, 230, 253, 350
Hpy8I GTNNAC 1 cut(s) 200
HpyAV CCTTC 3 cut(s) 23, 24, 319
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 2 cut(s) 56, 105
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 149
Hsp92II CATG 2 cut(s) 215, 325
HspAI GCGC 1 cut(s) 317
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 2 cut(s) 214, 238
LmnI GCTCC 2 cut(s) 16, 332
Lsp1109I GCAGC 2 cut(s) 20, 89
LweI GCATC 1 cut(s) 128
MaeI CTAG 1 cut(s) 470
MaeIII GTNAC 3 cut(s) 245, 443, 465
MalI GATC 2 cut(s) 216, 240
MboI GATC 2 cut(s) 214, 238
MboII GAAGA 1 cut(s) 101
MluCI AATT 4 cut(s) 106, 165, 287, 292
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 6 cut(s) 26, 73, 107, 237, 431, 450
MseI TTAA 1 cut(s) 291
MspI CCGG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 2 cut(s) 214, 238
NlaIII CATG 2 cut(s) 215, 325
NmuCI GTSAC 2 cut(s) 245, 443
PaeR7I CTCGAG 1 cut(s) 348
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 2 cut(s) 10, 104
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 2 cut(s) 9, 103
Sau3AI GATC 2 cut(s) 214, 238
SetI ASST 3 cut(s) 13, 84, 229
SfaNI GCATC 1 cut(s) 128
Sfr274I CTCGAG 1 cut(s) 348
SlaI CTCGAG 1 cut(s) 348
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
Sse9I AATT 4 cut(s) 106, 165, 287, 292
SsiI CCGC 2 cut(s) 203, 441
SspMI CTAG 1 cut(s) 470
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 3 cut(s) 95, 112, 349
TasI AATT 4 cut(s) 106, 165, 287, 292
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 1 cut(s) 436
TseFI GTSAC 2 cut(s) 245, 443
TseI GCWGC 2 cut(s) 8, 102
Tsp45I GTSAC 2 cut(s) 245, 443
TspDTI ATGAA 2 cut(s) 299, 338
TspRI CASTG 1 cut(s) 436
XapI RAATTY 1 cut(s) 287
XhoI CTCGAG 1 cut(s) 348
XmiI GTMKAC 1 cut(s) 199
XspI CTAG 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.