Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0029053

Physical Location & Seq

Genomic Coordinates Forward (+)

24052407 .. 24055598

Gene Structure 3192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G282100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCAGTTCCACATGAATTTGTTTACTCAGGCAGATGTCATTGTTTCCCCGACAATAGGGGTTACTGCATACACAATTTTGGATGATGCTCTGAACACTGGTGAGCTTGACTACATAAATGGAGCTGCACTTGTTAGATATTCAATAGCTGGAAACTTTTTGGGATTACCTGCGGTGACTGTTCCTGTTGGATATGATAAATCAGGTTTGCCAATTGGTCTTCAACTAATTGGGAAACCGTGGTCTGAAGCAACGCTTATTCACATAGCCTTCGCAATGCAGGACCTCTATGTCTCTGAGTACAGAAAGCCTGAGGTTTACTATGATCTACTCAATAAAAATTCAGTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005886 GO:0006066 GO:0006576 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009308 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016020 GO:0016787 GO:0016810 GO:0016811 GO:0031090 GO:0034308 GO:0034641 GO:0042439 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044106 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0047412 GO:0050896 GO:0051704 GO:0051707 GO:0070291 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amidase FPP

Protein Analysis

118

Amino Acids

12.89

Weight (kDa)

4.64

Isoelectric Point (pI)

25.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029053)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G282100_v2.0.a1
rosa_multiflora	Rmu_sc0003673.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	178
AciI	CCGC	1 cut(s)	173
AcsI	RAATTY	2 cut(s)	16, 340
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	144, 224
AluBI	AGCT	3 cut(s)	106, 125, 149
AluI	AGCT	3 cut(s)	106, 125, 149
Alw26I	GTCTC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	2 cut(s)	16, 340
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	2 cut(s)	113, 187
AvaII	GGWCC	1 cut(s)	283
AxyI	CCTNAGG	1 cut(s)	312
BbsI	GAAGAC	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	298
BfuAI	ACCTGC	1 cut(s)	178
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmsI	GCATC	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	103
Bse21I	CCTNAGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	239
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	3 cut(s)	41, 288, 303
BseNI	ACTGG	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	112
BsgI	GTGCAG	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	1 cut(s)	173
BspCNI	CTCAG	3 cut(s)	40, 289, 304
BspMI	ACCTGC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	239
BssMI	GATC	1 cut(s)	325
Bst4CI	ACNGT	2 cut(s)	181, 240
BstDEI	CTNAG	3 cut(s)	27, 297, 312
BstDSI	CCRYGG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	212
Bsu36I	CCTNAGG	1 cut(s)	312
BtgI	CCRYGG	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	96
BveI	ACCTGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	5 cut(s)	106, 125, 149, 269, 310
CviKI_1	RGCY	5 cut(s)	106, 125, 149, 269, 310
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	3 cut(s)	27, 297, 312
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	267
Eco81I	CCTNAGG	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	283
FaeI	CATG	1 cut(s)	16
FaiI	YATR	7 cut(s)	14, 70, 116, 195, 266, 291, 324
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	16
HphI	GGTGA	2 cut(s)	113, 187
Hpy166II	GTNNAC	2 cut(s)	24, 319
Hpy188I	TCNGA	3 cut(s)	93, 247, 298
Hpy8I	GTNNAC	2 cut(s)	24, 319
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	2 cut(s)	181, 240
HpyCH4V	TGCA	4 cut(s)	4, 68, 128, 280
HpyF3I	CTNAG	3 cut(s)	27, 297, 312
Hsp92II	CATG	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	8 cut(s)	14, 84, 135, 183, 189, 198, 266, 324
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	1 cut(s)	76
MaeIII	GTNAC	2 cut(s)	61, 175
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	1 cut(s)	212
MfeI	CAATTG	1 cut(s)	213
MluCI	AATT	5 cut(s)	16, 75, 213, 228, 340
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	2 cut(s)	296, 307
MunI	CAATTG	1 cut(s)	213
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	127
PpuMI	RGGWCCY	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	283
PspPPI	RGGWCCY	1 cut(s)	283
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	1 cut(s)	283
SetI	ASST	7 cut(s)	108, 127, 151, 172, 208, 288, 318
SfaNI	GCATC	1 cut(s)	76
SinI	GGWCC	1 cut(s)	283
Sse9I	AATT	5 cut(s)	16, 75, 213, 228, 340
SsiI	CCGC	1 cut(s)	173
TaaI	ACNGT	2 cut(s)	181, 240
TasI	AATT	5 cut(s)	16, 75, 213, 228, 340
TatI	WGTACW	1 cut(s)	300
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	2 cut(s)	16, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.