Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0029064

Physical Location & Seq

Genomic Coordinates Reverse (-)

5008077 .. 5009363

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G046900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGTCGTGGTGTATGCAACTGGTGAAGCGTGCTAATTACAAGGCTACAGTGAGAGATCCTGGGGCTCTTGGGGTTTTAACTATGACGGAGAACAAGTTTGTGTTCAGCCCAAACGTTCACATGTCCACCGCCGCGAAACCGGCGCTCGATGTGGAGTTCAAACAAATTACATGTCTCAAAAACACTAAGGAGGGAGGAGATAGACCACCTTGGCTTCGTCTCAGTGAGAAGGACAAAACTTACATCTTTGAGTTTGCAAGTTTTCGTGATCTTCATGTATGCCGAGAGTTTGCAGCCAATGCGCTTGCTAAGCGTGGAGAAGCTGCAATACCTCCTTGTTCTTCTGATGAACAAATCTGTACAGCAGAAATAATGCACCGTATGAAGTTATTACAAGAAAGCAGTGAGTTGCACAAACTTCATATGCAGTATGTAATGAGTGGTGTCCTAACTGAAGCTGAGTTCTGGGCAGCTAGGAACCAGTTTGGTGATGTAGATAGCCGTCCAAAGCCAAAGCAACGGGTTGGTTTCAGAAACTCAATGATAATGGACACCAAACCCATGACGGATGGCCGGACAAACAAGGTTACTTTTAGTTTGACTGCAGAGATTAAGTATCAGATTTTTGCCCTGAAACCAGCTGTTCAGCAGGCATTTCTTGCTCTGGTTCCCAGTAAGACTACGGAAAAAAACTTTTGGACGAAGTATTTCCGAGCTGAATACCTCCGAAGCACAGGAAATGCTGCTGCAGCTGAAGCAGAAGCCGCCGATGATGAGGAACTGGCAATGTTTTTGAAGGAGGATGAGGTATTGGCAAGGGAAGCTCGTCGAAAGCTTCGACGGGTTGATCCAACTTTGGACATGGAAGCTGACCAAGGAGATGATTATACGCACCTTCCAGATCATGGGATATTCTTTCGGGATGAGGTGTACAGCAGGAGAAGTACTTTATCACAAGACCTTAACCGGCAAGGTGCTGTTGTTCTTCAAGGAAGAAGCATCGTCGAAGTTGATGAGAGTGGTGTGCAGGGGGGATTTGGTAGGATTGCTCGGACGACTGAGATGGAGGATCTTCAAGAACCTCACCATCTTCATGTTGCTCAATTATTATGCATGAAGGATCCTGGAGACTACTTTGACACGCAACAAGCTAATAATGCAGTTAAAACTGAGGAAGCATACGGCTCCTTGAGGCAGTCTATATCTAAAATCAAGAGCATTGGATTGGGAAATTCCACAGTTGCAGCAGAAATTGCTCTTACGATTTTTAATGCAACATCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000439 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006351 GO:0006355 GO:0006357 GO:0006360 GO:0006366 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016310 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070816 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

BSD PH_TFIIH

Protein Analysis

429

Amino Acids

48.23

Weight (kDa)

6.25

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029064)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G046900_v2.0.a1 Prupe.5G213500_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	905
AccII	CGCG	1 cut(s)	134
AciI	CCGC	3 cut(s)	129, 132, 765
AclI	AACGTT	1 cut(s)	114
AclWI	GGATC	5 cut(s)	50, 842, 1077, 1115, 1128
AcoI	YGGCCR	1 cut(s)	571
AcsI	RAATTY	1 cut(s)	1231
AcuI	CTGAAG	2 cut(s)	474, 774
AfaI	GTAC	3 cut(s)	361, 932, 946
AfiI	CCNNNNNNNGG	1 cut(s)	905
AflIII	ACRYGT	2 cut(s)	120, 170
AgsI	TTSAA	4 cut(s)	160, 796, 989, 1076
AjnI	CCWGG	2 cut(s)	58, 1123
Alw26I	GTCTC	3 cut(s)	179, 224, 1122
AlwI	GGATC	5 cut(s)	50, 842, 1077, 1115, 1128
AoxI	GGCC	1 cut(s)	571
ApeKI	GCWGC	7 cut(s)	293, 323, 470, 743, 746, 749, 1244
ApoI	RAATTY	1 cut(s)	1231
ArsI	GACNNNNNNTTYG	2 cut(s)	157, 189
Asp700I	GAANNNNTTC	1 cut(s)	707
AspLEI	GCGC	2 cut(s)	145, 304
AsuHPI	GGTGA	3 cut(s)	34, 500, 1076
BamHI	GGATCC	1 cut(s)	1120
BanII	GRGCYC	1 cut(s)	67
BarI	GAAGNNNNNNTAC	2 cut(s)	312, 344
BbvI	GCAGC	7 cut(s)	305, 310, 482, 730, 733, 761, 1256
BccI	CCATC	3 cut(s)	563, 1057, 1095
BceAI	ACGGC	2 cut(s)	486, 1198
BciT130I	CCWGG	2 cut(s)	60, 1125
BcoDI	GTCTC	3 cut(s)	179, 224, 1122
BfaI	CTAG	1 cut(s)	474
BfmI	CTRYAG	3 cut(s)	45, 603, 747
BfoI	RGCGCY	1 cut(s)	146
BisI	GCNGC	9 cut(s)	132, 294, 324, 471, 744, 747, 750, 765, 1245
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	9 cut(s)	133, 295, 325, 472, 745, 748, 751, 766, 1246
BmcAI	AGTACT	1 cut(s)	946
Bme1390I	CCNGG	2 cut(s)	60, 1125
BmiI	GGNNCC	4 cut(s)	479, 669, 1122, 1186
BmrFI	CCNGG	2 cut(s)	60, 1125
BmrI	ACTGGG	1 cut(s)	666
BmsI	GCATC	1 cut(s)	1008
BmuI	ACTGGG	1 cut(s)	666
BpmI	CTGGAG	1 cut(s)	1146
Bpu1102I	GCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	1210
BsaJI	CCNNGG	3 cut(s)	59, 209, 874
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	905
Bse118I	RCCGGY	2 cut(s)	139, 966
Bse1I	ACTGG	4 cut(s)	24, 481, 672, 786
Bse3DI	GCAATG	1 cut(s)	792
BseBI	CCWGG	2 cut(s)	60, 1125
BseDI	CCNNGG	3 cut(s)	59, 209, 874
BseGI	GGATG	3 cut(s)	574, 808, 928
BseLI	CCNNNNNNNGG	1 cut(s)	905
BseMI	GCAATG	1 cut(s)	792
BseMII	CTCAG	4 cut(s)	235, 450, 1050, 1161
BseNI	ACTGG	4 cut(s)	24, 481, 672, 786
BseRI	GAGGAG	1 cut(s)	210
BseXI	GCAGC	7 cut(s)	305, 310, 482, 730, 733, 761, 1256
BsgI	GTGCAG	1 cut(s)	1046
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	573
BsiSI	CCGG	3 cut(s)	140, 574, 967
BslI	CCNNNNNNNGG	1 cut(s)	905
BsmAI	GTCTC	3 cut(s)	179, 224, 1122
BsmBI	CGTCTC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	573
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp1407I	TGTACA	2 cut(s)	359, 930
Bsp143I	GATC	6 cut(s)	55, 268, 847, 901, 1069, 1120
Bsp1720I	GCTNAGC	1 cut(s)	309
BspACI	CCGC	3 cut(s)	129, 132, 765
BspANI	GGCC	1 cut(s)	573
BspCNI	CTCAG	4 cut(s)	234, 451, 1051, 1162
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	4 cut(s)	479, 669, 1122, 1186
BspMAI	CTGCAG	2 cut(s)	607, 751
BspPI	GGATC	5 cut(s)	50, 842, 1077, 1115, 1128
BsrDI	GCAATG	1 cut(s)	792
BsrFI	RCCGGY	2 cut(s)	139, 966
BsrGI	TGTACA	2 cut(s)	359, 930
BsrI	ACTGG	4 cut(s)	24, 481, 672, 786
BssAI	RCCGGY	2 cut(s)	139, 966
BssECI	CCNNGG	3 cut(s)	59, 209, 874
BssMI	GATC	6 cut(s)	55, 268, 847, 901, 1069, 1120
BssT1I	CCWWGG	2 cut(s)	209, 874
Bst2UI	CCWGG	2 cut(s)	60, 1125
Bst4CI	ACNGT	3 cut(s)	49, 380, 1240
BstAPI	GCANNNNNTGC	3 cut(s)	299, 659, 1253
BstAUI	TGTACA	2 cut(s)	359, 930
BstC8I	GCNNGC	3 cut(s)	30, 306, 651
BstDEI	CTNAG	6 cut(s)	186, 221, 309, 459, 1059, 1170
BstF5I	GGATG	3 cut(s)	574, 808, 928
BstFNI	CGCG	1 cut(s)	134
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	2 cut(s)	145, 304
BstKTI	GATC	6 cut(s)	58, 271, 850, 904, 1072, 1123
BstMAI	GTCTC	3 cut(s)	179, 224, 1122
BstMBI	GATC	6 cut(s)	55, 268, 847, 901, 1069, 1120
BstNI	CCWGG	2 cut(s)	60, 1125
BstNSI	RCATGY	2 cut(s)	124, 174
BstSCI	CCNGG	2 cut(s)	58, 1123
BstSFI	CTRYAG	3 cut(s)	45, 603, 747
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	7 cut(s)	305, 310, 482, 730, 733, 761, 1256
BstX2I	RGATCY	3 cut(s)	55, 1069, 1120
BstYI	RGATCY	3 cut(s)	55, 1069, 1120
BsuRI	GGCC	1 cut(s)	573
BtsCI	GGATG	3 cut(s)	574, 808, 928
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	3 cut(s)	54, 229, 409
Cac8I	GCNNGC	3 cut(s)	30, 306, 651
CfoI	GCGC	2 cut(s)	145, 304
Cfr10I	RCCGGY	2 cut(s)	139, 966
Csp6I	GTAC	3 cut(s)	360, 931, 945
CviAII	CATG	8 cut(s)	121, 171, 275, 562, 862, 905, 1094, 1114
CviQI	GTAC	3 cut(s)	360, 931, 945
DdeI	CTNAG	6 cut(s)	186, 221, 309, 459, 1059, 1170
DpnI	GATC	6 cut(s)	57, 270, 849, 903, 1071, 1122
DpnII	GATC	6 cut(s)	55, 268, 847, 901, 1069, 1120
EaeI	YGGCCR	1 cut(s)	571
Eco130I	CCWWGG	2 cut(s)	209, 874
Eco24I	GRGCYC	1 cut(s)	67
Eco57I	CTGAAG	2 cut(s)	474, 774
EcoRII	CCWGG	2 cut(s)	58, 1123
EcoT14I	CCWWGG	2 cut(s)	209, 874
EcoT22I	ATGCAT	1 cut(s)	1115
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	2 cut(s)	209, 874
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	8 cut(s)	124, 174, 278, 565, 865, 908, 1097, 1117
FatI	CATG	8 cut(s)	120, 170, 274, 561, 861, 904, 1093, 1113
FauNDI	CATATG	1 cut(s)	423
Fnu4HI	GCNGC	9 cut(s)	132, 294, 324, 471, 744, 747, 750, 765, 1245
FokI	GGATG	3 cut(s)	581, 815, 935
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	9 cut(s)	132, 294, 324, 471, 744, 747, 750, 765, 1245
FspBI	CTAG	1 cut(s)	474
GlaI	GCGC	2 cut(s)	144, 303
GluI	GCNGC	9 cut(s)	132, 294, 324, 471, 744, 747, 750, 765, 1245
GsuI	CTGGAG	1 cut(s)	1146
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	573
HapII	CCGG	3 cut(s)	140, 574, 967
HhaI	GCGC	2 cut(s)	145, 304
Hin1II	CATG	8 cut(s)	124, 174, 278, 565, 865, 908, 1097, 1117
Hin6I	GCGC	2 cut(s)	143, 302
HinP1I	GCGC	2 cut(s)	143, 302
HindIII	AAGCTT	1 cut(s)	833
HpaII	CCGG	3 cut(s)	140, 574, 967
HphI	GGTGA	3 cut(s)	34, 500, 1076
Hpy166II	GTNNAC	3 cut(s)	118, 126, 931
Hpy188I	TCNGA	6 cut(s)	346, 533, 621, 713, 728, 1053
Hpy188III	TCNNGA	5 cut(s)	266, 899, 920, 1076, 1213
Hpy8I	GTNNAC	3 cut(s)	118, 126, 931
Hpy99I	CGWCG	3 cut(s)	831, 843, 1007
HpyAV	CCTTC	4 cut(s)	223, 790, 905, 1111
HpyCH4III	ACNGT	3 cut(s)	49, 380, 1240
HpyCH4IV	ACGT	1 cut(s)	114
HpyF3I	CTNAG	6 cut(s)	186, 221, 309, 459, 1059, 1170
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	8 cut(s)	124, 174, 278, 565, 865, 908, 1097, 1117
HspAI	GCGC	2 cut(s)	143, 302
Kzo9I	GATC	6 cut(s)	55, 268, 847, 901, 1069, 1120
LmnI	GCTCC	1 cut(s)	1190
Lsp1109I	GCAGC	7 cut(s)	305, 310, 482, 730, 733, 761, 1256
LweI	GCATC	1 cut(s)	1008
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	6 cut(s)	57, 270, 849, 903, 1071, 1122
MboI	GATC	6 cut(s)	55, 268, 847, 901, 1069, 1120
MboII	GAAGA	6 cut(s)	263, 333, 977, 1005, 1064, 1082
MflI	RGATCY	3 cut(s)	55, 1069, 1120
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	5 cut(s)	34, 165, 1103, 1231, 1251
MmeI	TCCRAC	1 cut(s)	875
Mph1103I	ATGCAT	1 cut(s)	1115
MroXI	GAANNNNTTC	1 cut(s)	707
MseI	TTAA	5 cut(s)	77, 612, 963, 1164, 1269
MslI	CAYNNNNRTG	1 cut(s)	1092
MspA1I	CMGCKG	2 cut(s)	641, 752
MspI	CCGG	3 cut(s)	140, 574, 967
MspR9I	CCNGG	2 cut(s)	60, 1125
MvaI	CCWGG	2 cut(s)	60, 1125
MvnI	CGCG	1 cut(s)	134
NdeI	CATATG	1 cut(s)	423
NdeII	GATC	6 cut(s)	55, 268, 847, 901, 1069, 1120
NlaIII	CATG	8 cut(s)	124, 174, 278, 565, 865, 908, 1097, 1117
NlaIV	GGNNCC	4 cut(s)	479, 669, 1122, 1186
NmeAIII	GCCGAG	1 cut(s)	308
NsiI	ATGCAT	1 cut(s)	1115
NspI	RCATGY	2 cut(s)	124, 174
PciI	ACATGT	2 cut(s)	120, 170
PcsI	WCGNNNNNNNCGW	1 cut(s)	835
PdmI	GAANNNNTTC	1 cut(s)	707
PflMI	CCANNNNNTGG	1 cut(s)	905
PfoI	TCCNGGA	1 cut(s)	1123
PkrI	GCNGC	9 cut(s)	133, 295, 325, 472, 745, 748, 751, 766, 1246
PscI	ACATGT	2 cut(s)	120, 170
Psp1406I	AACGTT	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	58, 1123
PspGI	CCWGG	2 cut(s)	58, 1123
PspN4I	GGNNCC	4 cut(s)	479, 669, 1122, 1186
PstI	CTGCAG	2 cut(s)	607, 751
PsuI	RGATCY	3 cut(s)	55, 1069, 1120
PvuII	CAGCTG	2 cut(s)	641, 752
RsaI	GTAC	3 cut(s)	361, 932, 946
RsaNI	GTAC	3 cut(s)	360, 931, 945
RseI	CAYNNNNRTG	1 cut(s)	1092
SaqAI	TTAA	5 cut(s)	77, 612, 963, 1164, 1269
SatI	GCNGC	9 cut(s)	132, 294, 324, 471, 744, 747, 750, 765, 1245
Sau3AI	GATC	6 cut(s)	55, 268, 847, 901, 1069, 1120
ScaI	AGTACT	1 cut(s)	946
ScrFI	CCNGG	2 cut(s)	60, 1125
SduI	GDGCHC	1 cut(s)	67
SfaNI	GCATC	1 cut(s)	1008
SfcI	CTRYAG	3 cut(s)	45, 603, 747
SmiMI	CAYNNNNRTG	1 cut(s)	1092
SmlI	CTYRAG	1 cut(s)	1189
SmoI	CTYRAG	1 cut(s)	1189
Sse9I	AATT	5 cut(s)	34, 165, 1103, 1231, 1251
SsiI	CCGC	3 cut(s)	129, 132, 765
SspMI	CTAG	1 cut(s)	474
StyD4I	CCNGG	2 cut(s)	58, 1123
StyI	CCWWGG	2 cut(s)	209, 874
TaaI	ACNGT	3 cut(s)	49, 380, 1240
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	4 cut(s)	147, 829, 838, 1005
TasI	AATT	5 cut(s)	34, 165, 1103, 1231, 1251
TatI	WGTACW	3 cut(s)	359, 930, 944
TauI	GCSGC	2 cut(s)	134, 767
Tru1I	TTAA	5 cut(s)	77, 612, 963, 1164, 1269
Tru9I	TTAA	5 cut(s)	77, 612, 963, 1164, 1269
TscAI	CASTG	3 cut(s)	54, 229, 409
TseI	GCWGC	7 cut(s)	293, 323, 470, 743, 746, 749, 1244
TspDTI	ATGAA	6 cut(s)	263, 363, 398, 410, 1082, 1130
TspGWI	ACGGA	3 cut(s)	101, 581, 698
TspRI	CASTG	3 cut(s)	54, 229, 409
Van91I	CCANNNNNTGG	1 cut(s)	905
XapI	RAATTY	1 cut(s)	1231
XceI	RCATGY	2 cut(s)	124, 174
XmnI	GAANNNNTTC	1 cut(s)	707
XspI	CTAG	1 cut(s)	474
ZrmI	AGTACT	1 cut(s)	946
Zsp2I	ATGCAT	1 cut(s)	1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.