Prupe.5G059400_v2.0.a1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0028684
Physical Location & Seq
Reverse (-)
6395136 .. 6398085
2950 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G059400.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 534 bp
ATGGGAGCCATTGTGGAGAGCTTAGCTCTAAGTCCAACTTACTTGAGGAACAAGCTTGAGCAAGGAGTGGACGTAATAATAGCCAACAAATACCCACAATCTTCCCCATCAAGCAATATGCTCGGACTTTCATCACATACAGACCACAGTTTCATCACCATCCTTCTTGAAAACATGTCAGGCCTTGAGATCATGGATTTCACAGACGACAATGCTTGGAAGTCTGTCCCAGCAACCGATGGTGCCCTTAAAGTCCTGGTAGGGAATCATCTTGAAGTTCTCAGCAATGAGTTGTACAATAGTAATTCATACTCCATTCTCAATGGTAGACATGAACGAGTGCCAAGCCCTCTAATGAGTAGGGCTTCTGTAGGTAGCTTTCTTAGCCTAGCCATGGAAGATATGGTGGAGCCTGCCACAGAGCTTGTTGATGAAGATCATCCAGAAAGATACAGCGCAAGTAGCTTGGATGAATATATGAAGTTTCTCTCCTTCAAAGAGGAAAAATCCTACATAGAGAGCCTTAAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

178

Amino Acids

19.65

Weight (kDa)

4.65

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028684)

Species Orthologous Gene IDs
malus_domestica MD04G1050700.v1.1
prunus_persica Prupe.5G059400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 328
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 394
AflII CTTAAG 1 cut(s) 524
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 3 cut(s) 170, 275, 496
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 6 cut(s) 21, 26, 55, 378, 424, 465
AluI AGCT 6 cut(s) 21, 26, 55, 378, 424, 465
AoxI GGCC 1 cut(s) 181
AspLEI GCGC 1 cut(s) 458
AsuHPI GGTGA 1 cut(s) 148
BaeGI GKGCMC 1 cut(s) 247
BanI GGYRCC 1 cut(s) 242
BccI CCATC 3 cut(s) 115, 167, 233
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 1 cut(s) 257
BfaI CTAG 1 cut(s) 389
BfmI CTRYAG 1 cut(s) 369
BfrI CTTAAG 1 cut(s) 524
BglII AGATCT 1 cut(s) 528
BlpI GCTNAGC 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 257
BmiI GGNNCC 3 cut(s) 7, 244, 411
BmrFI CCNGG 1 cut(s) 257
BplI GAGNNNNNCTC 2 cut(s) 10, 42
Bpu1102I GCTNAGC 1 cut(s) 22
BpuEI CTTGAG 3 cut(s) 64, 77, 206
BsaBI GATNNNNATC 1 cut(s) 435
BsaJI CCNNGG 1 cut(s) 393
BsaXI ACNNNNNCTCC 3 cut(s) 27, 57, 87
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse3DI GCAATG 1 cut(s) 292
Bse8I GATNNNNATC 1 cut(s) 435
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 3 cut(s) 159, 439, 475
BseJI GATNNNNATC 1 cut(s) 435
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 295
BseSI GKGCMC 1 cut(s) 247
BseYI CCCAGC 1 cut(s) 229
BshFI GGCC 1 cut(s) 183
BshNI GGYRCC 1 cut(s) 242
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 394
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 247
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 3 cut(s) 189, 436, 528
Bsp1720I GCTNAGC 1 cut(s) 22
Bsp19I CCATGG 1 cut(s) 393
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 1 cut(s) 294
BspLI GGNNCC 3 cut(s) 7, 244, 411
BspT107I GGYRCC 1 cut(s) 242
BspTI CTTAAG 1 cut(s) 524
BsrDI GCAATG 1 cut(s) 292
BsrGI TGTACA 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 3 cut(s) 189, 436, 528
BssT1I CCWWGG 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 149
BstAFI CTTAAG 1 cut(s) 524
BstAUI TGTACA 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 4 cut(s) 22, 29, 281, 383
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 3 cut(s) 159, 439, 475
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 3 cut(s) 192, 439, 531
BstMBI GATC 3 cut(s) 189, 436, 528
BstMWI GCNNNNNNNGC 2 cut(s) 384, 462
BstNI CCWGG 1 cut(s) 257
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 255
BstSFI CTRYAG 1 cut(s) 369
BstSLI GKGCMC 1 cut(s) 247
BstX2I RGATCY 1 cut(s) 528
BstYI RGATCY 1 cut(s) 528
BsuRI GGCC 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 3 cut(s) 159, 439, 475
Cac8I GCNNGC 1 cut(s) 414
CfoI GCGC 1 cut(s) 458
Csp6I GTAC 1 cut(s) 295
CspCI CAANNNNNGTGG 2 cut(s) 406, 441
CviAII CATG 4 cut(s) 175, 193, 332, 394
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 4 cut(s) 22, 29, 281, 383
DpnI GATC 3 cut(s) 191, 438, 530
DpnII GATC 3 cut(s) 189, 436, 528
Eco130I CCWWGG 1 cut(s) 393
Eco147I AGGCCT 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 255
EcoT14I CCWWGG 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 4 cut(s) 178, 196, 335, 397
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FaqI GGGAC 1 cut(s) 212
FatI CATG 4 cut(s) 174, 192, 331, 393
FblI GTMKAC 1 cut(s) 328
FokI GGATG 3 cut(s) 146, 426, 482
FspBI CTAG 1 cut(s) 389
GlaI GCGC 1 cut(s) 457
GsaI CCCAGC 1 cut(s) 233
HaeIII GGCC 1 cut(s) 183
HhaI GCGC 1 cut(s) 458
Hin1II CATG 4 cut(s) 178, 196, 335, 397
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 1 cut(s) 265
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 2 cut(s) 70, 329
Hpy188I TCNGA 2 cut(s) 125, 533
Hpy188III TCNNGA 3 cut(s) 167, 272, 443
Hpy8I GTNNAC 2 cut(s) 70, 329
HpyAV CCTTC 2 cut(s) 173, 502
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4IV ACGT 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 2 cut(s) 384, 462
HpyF3I CTNAG 4 cut(s) 22, 29, 281, 383
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 4 cut(s) 178, 196, 335, 397
HspAI GCGC 1 cut(s) 456
Kzo9I GATC 3 cut(s) 189, 436, 528
LmnI GCTCC 2 cut(s) 5, 409
LpnPI CCDG 6 cut(s) 165, 242, 243, 269, 426, 456
MaeI CTAG 1 cut(s) 389
MaeII ACGT 1 cut(s) 72
MalI GATC 3 cut(s) 191, 438, 530
MboI GATC 3 cut(s) 189, 436, 528
MboII GAAGA 3 cut(s) 93, 410, 446
MflI RGATCY 1 cut(s) 528
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 3 cut(s) 39, 360, 493
MseI TTAA 2 cut(s) 249, 525
MspCI CTTAAG 1 cut(s) 524
MspR9I CCNGG 1 cut(s) 257
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 384, 462
NcoI CCATGG 1 cut(s) 393
NdeII GATC 3 cut(s) 189, 436, 528
NlaIII CATG 4 cut(s) 178, 196, 335, 397
NlaIV GGNNCC 3 cut(s) 7, 244, 411
NspI RCATGY 1 cut(s) 178
PceI AGGCCT 1 cut(s) 183
PciI ACATGT 1 cut(s) 174
PfeI GAWTC 1 cut(s) 265
PscI ACATGT 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 229
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 3 cut(s) 7, 244, 411
PsuI RGATCY 1 cut(s) 528
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SaqAI TTAA 2 cut(s) 249, 525
Sau3AI GATC 3 cut(s) 189, 436, 528
ScrFI CCNGG 1 cut(s) 257
SduI GDGCHC 1 cut(s) 247
SetI ASST 8 cut(s) 23, 28, 57, 75, 376, 380, 426, 467
SfcI CTRYAG 1 cut(s) 369
SmlI CTYRAG 4 cut(s) 43, 56, 185, 524
SmoI CTYRAG 4 cut(s) 43, 56, 185, 524
Sse9I AATT 1 cut(s) 304
SseBI AGGCCT 1 cut(s) 183
SspMI CTAG 1 cut(s) 389
StuI AGGCCT 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 255
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 149
TaiI ACGT 1 cut(s) 75
TasI AATT 1 cut(s) 304
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 2 cut(s) 249, 525
Tru9I TTAA 2 cut(s) 249, 525
TspDTI ATGAA 7 cut(s) 120, 142, 297, 348, 447, 486, 494
Vha464I CTTAAG 1 cut(s) 524
XceI RCATGY 1 cut(s) 178
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 328
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.