Prupe.5G150500_v2.0.a1

Protein transport protein Sec61 subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
13660696 .. 13661940
1245 bp
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UTR
Exon/CDS
Intron
Prupe.5G150500.3_v2.0.a1.CDS.2

Sequence Viewer

Length: 210 bp
ATGGAAGCCATAGACTCAGTCGTCGATCCTCTCAGAGTGTTCGCGAAGGAAAGCACTCGACTGGTGAAGAGGTGCCACAAGCCTGATCGCAAAGAGTTCACGAAGGTGGCGATCCGTACAGCCATCGGGTTCGTAGCAATGGGATTCGTTGGGTTTTTCGTGAAGCTGGTCTTCATCCCCATCAACAACATCATCGTCGGCTCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

70

Amino Acids

7.72

Weight (kDa)

10.01

Isoelectric Point (pI)

24.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020852)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 20
AccB1I GGYRCC 1 cut(s) 72
AccII CGCG 1 cut(s) 44
AclWI GGATC 2 cut(s) 20, 106
AfaI GTAC 1 cut(s) 118
AleI CACNNNNGTG 1 cut(s) 104
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
AlwI GGATC 2 cut(s) 20, 106
AsuHPI GGTGA 1 cut(s) 76
BanI GGYRCC 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 163
BccI CCATC 2 cut(s) 131, 188
BmiI GGNNCC 1 cut(s) 74
BpiI GAAGAC 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 144
BseGI GGATG 1 cut(s) 174
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 30, 46
BseNI ACTGG 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 44
BshNI GGYRCC 1 cut(s) 72
Bsp143I GATC 3 cut(s) 25, 85, 111
Bsp68I TCGCGA 1 cut(s) 44
BspCNI CTCAG 2 cut(s) 29, 45
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 1 cut(s) 74
BspPI GGATC 2 cut(s) 20, 106
BspT107I GGYRCC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 144
BsrI ACTGG 1 cut(s) 66
BssMI GATC 3 cut(s) 25, 85, 111
Bst6I CTCTTC 1 cut(s) 62
BstDEI CTNAG 2 cut(s) 16, 32
BstF5I GGATG 1 cut(s) 174
BstFNI CGCG 1 cut(s) 44
BstKTI GATC 3 cut(s) 28, 88, 114
BstMBI GATC 3 cut(s) 25, 85, 111
BstUI CGCG 1 cut(s) 44
BstV2I GAAGAC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 174
BtuMI TCGCGA 1 cut(s) 44
Csp6I GTAC 1 cut(s) 117
CviJI RGCY 5 cut(s) 8, 82, 122, 166, 201
CviKI_1 RGCY 5 cut(s) 8, 82, 122, 166, 201
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 2 cut(s) 16, 32
DpnI GATC 3 cut(s) 27, 87, 113
DpnII GATC 3 cut(s) 25, 85, 111
DrdI GACNNNNNNGTC 1 cut(s) 20
DseDI GACNNNNNNGTC 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
FaiI YATR 1 cut(s) 11
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FokI GGATG 1 cut(s) 161
HinfI GANTC 2 cut(s) 14, 144
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 35
Hpy188III TCNNGA 3 cut(s) 43, 100, 160
Hpy8I GTNNAC 1 cut(s) 99
Hpy99I CGWCG 2 cut(s) 26, 200
HpyAV CCTTC 2 cut(s) 40, 97
HpyF3I CTNAG 2 cut(s) 16, 32
Kzo9I GATC 3 cut(s) 25, 85, 111
LpnPI CCDG 3 cut(s) 47, 96, 152
MalI GATC 3 cut(s) 27, 87, 113
MboI GATC 3 cut(s) 25, 85, 111
MboII GAAGA 2 cut(s) 79, 163
MlyI GAGTC 1 cut(s) 8
MnlI CCTC 2 cut(s) 39, 63
MslI CAYNNNNRTG 1 cut(s) 104
MvnI CGCG 1 cut(s) 44
NdeII GATC 3 cut(s) 25, 85, 111
NlaIV GGNNCC 1 cut(s) 74
NruI TCGCGA 1 cut(s) 44
OliI CACNNNNGTG 1 cut(s) 104
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PfeI GAWTC 1 cut(s) 144
PflFI GACNNNGTC 1 cut(s) 17
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 74
PsyI GACNNNGTC 1 cut(s) 17
RruI TCGCGA 1 cut(s) 44
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 104
Sau3AI GATC 3 cut(s) 25, 85, 111
SchI GAGTC 1 cut(s) 8
SetI ASST 3 cut(s) 74, 108, 168
SgeI CNNG 9 cut(s) 55, 69, 74, 91, 95, 112, 139, 172, 179
SmiMI CAYNNNNRTG 1 cut(s) 104
TaqI TCGA 2 cut(s) 24, 58
TfiI GAWTC 1 cut(s) 144
TspDTI ATGAA 1 cut(s) 163
TspGWI ACGGA 1 cut(s) 104
Tth111I GACNNNGTC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.