Prupe.5G169000_v2.0.a1

Galactinol--sucrose galactosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0029068
Physical Location & Seq
Reverse (-)
14522287 .. 14525017
2731 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G169000.1

Sequence Viewer

Length: 1149 bp
ATGGCTTGGCTACCCACAATCGTATCGATGACGATGATCATTTCGGAGGCCATTTTCTTGGAACTCACAATTTCAGGCGGCGTGTTGCTTGAGATGCTATTCGAGGAGTTTGGTGGTCGAGTTGAGCTGGCTAAAGCTTATTACAAGGCACTGACTGATTCCATGAAGAAGCATTTCAATGGCAATGGAGTAATTGCCAGCATGCAGCACTGCAATGACTTCATGTACCTTGGATGTGTCGGGGATGATTTCTGGTCTAAGACCACGGGGGTAGCAGATGGGACGTATTGGCTGCAAGGGTGTCACGCAGTGCATTGTGCCTACAGCAGCCTGTGGATGGGCAACATCATACACCCATGTGCTGAATTCCACGCTGCATCAAGAGCTATATCCGGAGGCCCAATCTACATCAGTGACTCTGTTGGGAAGCACAACTTCAAGCTTCTTAAGAGCCTTGTGTTGCCAGATGGCTCTGTATTGCGATGCCAGCACTATGCTCTTCCTACTAGGGATTGCCTCTTTGAAGACCCTGTGCATGATGGGAAAACCATGCTCAAAATTTGGAACCTAAACAAATACACTGGAGCATTGGGATTATTTAATTGCCAAGGAGGAGGATGGTGCCCCAAATCCAGGCGCAACATAAGTGCCCCTGAGTGCTCAAAGCCTTTGACCTGCTTGTCTGGCCCAAAAGATATAGAGTGGAACAATGGGAAGAGCCCAATTTCAATCAAAGGAATGAACATATTTGCTGTGTACATGCACCAGCAAAAGAAGCTGAAGCTCTTGAAGCTTTCAGAGAAGGTAGAGATTTCGCTTCAGCCTTTCGATTTTAAGCTCCTCACTGTTTCTCCAGTGAGGGTTTTGCCAAAGAAGTTTATCCAATTTGCTCCAATTGGGTTGGTGAACATGCTCAACACGGGTGGTGCAATTCAGTCGCTGGAATTTGAGGATGAAGAAAACTCCTCAAATTTGGTGAGAATTGGAGTGAAGGGTTGTGGGGAAATGAGTGTGTTTGCTTCTGAAAGGCCAAGTGCTTGTAAGATTGATGGAGAGGAGGTAAAGTTTGATTTTGTTGATAAGATGGTCACAGTCCAAGTGCCGTGGCCTAACCCTTCAACATCAACCGTGGTTGATTTCTTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 map00052
Pfam Domains
Protein Families
Raffinose_syn

Protein Analysis

383

Amino Acids

42.28

Weight (kDa)

7.1

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029068)

Species Orthologous Gene IDs
prunus_persica Prupe.5G169000_v2.0.a1
pyrus_communis pycom06g15110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 679
Acc36I ACCTGC 1 cut(s) 683
AccB1I GGYRCC 1 cut(s) 621
AccIII TCCGGA 1 cut(s) 392
AciI CCGC 1 cut(s) 78
AcsI RAATTY 4 cut(s) 365, 558, 944, 970
AcuI CTGAAG 2 cut(s) 800, 803
AdeI CACNNNGTG 1 cut(s) 310
AfaI GTAC 2 cut(s) 227, 758
AfiI CCNNNNNNNGG 2 cut(s) 337, 633
AflII CTTAAG 1 cut(s) 446
AgsI TTSAA 6 cut(s) 178, 439, 524, 729, 790, 1119
AjnI CCWGG 1 cut(s) 632
AleI CACNNNNGTG 1 cut(s) 357
AluBI AGCT 8 cut(s) 127, 137, 386, 442, 778, 784, 793, 838
AluI AGCT 8 cut(s) 127, 137, 386, 442, 778, 784, 793, 838
Alw21I GWGCWC 1 cut(s) 662
AlwNI CAGNNNCTG 1 cut(s) 940
Aor13HI TCCGGA 1 cut(s) 392
AoxI GGCC 5 cut(s) 48, 397, 685, 1028, 1106
ApeKI GCWGC 4 cut(s) 205, 292, 327, 374
ApoI RAATTY 4 cut(s) 365, 558, 944, 970
Asp700I GAANNNNTTC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 639
AspS9I GGNCC 2 cut(s) 398, 686
AsuHPI GGTGA 2 cut(s) 916, 988
BaeGI GKGCMC 2 cut(s) 626, 652
BaeI ACNNNNGTAYC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 621
BanII GRGCYC 1 cut(s) 722
BbsI GAAGAC 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 662
BbvI GCAGC 4 cut(s) 217, 279, 339, 361
BccI CCATC 7 cut(s) 272, 331, 461, 533, 612, 1043, 1078
BceAI ACGGC 1 cut(s) 1087
BcgI CGANNNNNNTGC 2 cut(s) 918, 952
BciT130I CCWGG 1 cut(s) 634
BclI TGATCA 1 cut(s) 36
BfaI CTAG 1 cut(s) 507
BfmI CTRYAG 1 cut(s) 322
BfrI CTTAAG 1 cut(s) 446
BfuAI ACCTGC 1 cut(s) 683
BisI GCNGC 5 cut(s) 79, 206, 293, 328, 375
BlsI GCNGC 5 cut(s) 80, 207, 294, 329, 376
Bme1390I CCNGG 1 cut(s) 634
BmgT120I GGNCC 2 cut(s) 398, 686
BmiI GGNNCC 2 cut(s) 566, 623
BmrFI CCNGG 1 cut(s) 634
BmsI GCATC 3 cut(s) 84, 386, 473
BpiI GAAGAC 1 cut(s) 531
BpmI CTGGAG 2 cut(s) 603, 837
BpuEI CTTGAG 1 cut(s) 110
Bsa29I ATCGAT 1 cut(s) 26
BsaJI CCNNGG 5 cut(s) 229, 264, 607, 1103, 1128
BsaWI WCCGGW 1 cut(s) 392
BsaXI ACNNNNNCTCC 6 cut(s) 835, 865, 1044, 1049, 1074, 1079
Bsc4I CCNNNNNNNGG 2 cut(s) 337, 633
Bse1I ACTGG 2 cut(s) 586, 854
Bse3DI GCAATG 2 cut(s) 190, 220
BseAI TCCGGA 1 cut(s) 392
BseBI CCWGG 1 cut(s) 634
BseCI ATCGAT 1 cut(s) 26
BseDI CCNNGG 5 cut(s) 229, 264, 607, 1103, 1128
BseGI GGATG 5 cut(s) 239, 250, 342, 623, 958
BseLI CCNNNNNNNGG 2 cut(s) 337, 633
BseMI GCAATG 2 cut(s) 190, 220
BseMII CTCAG 1 cut(s) 645
BseNI ACTGG 2 cut(s) 586, 854
BseRI GAGGAG 5 cut(s) 119, 627, 830, 955, 1070
BseSI GKGCMC 2 cut(s) 626, 652
BseXI GCAGC 4 cut(s) 217, 279, 339, 361
BshFI GGCC 5 cut(s) 50, 399, 687, 1030, 1108
BshNI GGYRCC 1 cut(s) 621
BshVI ATCGAT 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 662
BsiSI CCGG 1 cut(s) 393
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 2 cut(s) 337, 633
BsmFI GGGAC 1 cut(s) 295
BsnI GGCC 5 cut(s) 50, 399, 687, 1030, 1108
Bsp1286I GDGCHC 4 cut(s) 626, 652, 662, 722
Bsp13I TCCGGA 1 cut(s) 392
Bsp1407I TGTACA 1 cut(s) 756
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 1 cut(s) 78
BspANI GGCC 5 cut(s) 50, 399, 687, 1030, 1108
BspCNI CTCAG 1 cut(s) 646
BspDI ATCGAT 1 cut(s) 26
BspEI TCCGGA 1 cut(s) 392
BspLI GGNNCC 2 cut(s) 566, 623
BspMI ACCTGC 1 cut(s) 683
BspQI GCTCTTC 2 cut(s) 504, 710
BspT107I GGYRCC 1 cut(s) 621
BspTI CTTAAG 1 cut(s) 446
BsrDI GCAATG 2 cut(s) 190, 220
BsrGI TGTACA 1 cut(s) 756
BsrI ACTGG 2 cut(s) 586, 854
BssECI CCNNGG 5 cut(s) 229, 264, 607, 1103, 1128
BssMI GATC 1 cut(s) 36
BssT1I CCWWGG 2 cut(s) 229, 607
Bst2UI CCWGG 1 cut(s) 634
Bst4CI ACNGT 3 cut(s) 847, 1093, 1129
Bst6I CTCTTC 2 cut(s) 504, 710
BstAFI CTTAAG 1 cut(s) 446
BstAUI TGTACA 1 cut(s) 756
BstC8I GCNNGC 4 cut(s) 129, 199, 203, 488
BstDEI CTNAG 2 cut(s) 258, 654
BstDSI CCRYGG 3 cut(s) 264, 1103, 1128
BstF5I GGATG 5 cut(s) 239, 250, 342, 623, 958
BstHHI GCGC 1 cut(s) 639
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 6 cut(s) 94, 383, 487, 684, 775, 790
BstNI CCWGG 1 cut(s) 634
BstNSI RCATGY 3 cut(s) 205, 763, 913
BstSCI CCNGG 1 cut(s) 632
BstSFI CTRYAG 1 cut(s) 322
BstSLI GKGCMC 2 cut(s) 626, 652
BstV1I GCAGC 4 cut(s) 217, 279, 339, 361
BstV2I GAAGAC 1 cut(s) 531
BstXI CCANNNNNNTGG 1 cut(s) 58
Bsu15I ATCGAT 1 cut(s) 26
BsuRI GGCC 5 cut(s) 50, 399, 687, 1030, 1108
BsuTUI ATCGAT 1 cut(s) 26
BtgI CCRYGG 3 cut(s) 264, 1103, 1128
BtgZI GCGATG 1 cut(s) 496
BtsCI GGATG 5 cut(s) 239, 250, 342, 623, 958
BtsI GCAGTG 2 cut(s) 208, 315
BtsIMutI CAGTG 7 cut(s) 149, 208, 315, 418, 579, 843, 861
BveI ACCTGC 1 cut(s) 683
Cac8I GCNNGC 4 cut(s) 129, 199, 203, 488
CaiI CAGNNNCTG 1 cut(s) 940
CfoI GCGC 1 cut(s) 639
Cfr13I GGNCC 2 cut(s) 398, 686
ClaI ATCGAT 1 cut(s) 26
Csp6I GTAC 2 cut(s) 226, 757
CspCI CAANNNNNGTGG 4 cut(s) 904, 939, 1085, 1120
CviAII CATG 8 cut(s) 163, 202, 223, 357, 536, 550, 760, 910
CviQI GTAC 2 cut(s) 226, 757
DdeI CTNAG 2 cut(s) 258, 654
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
DraIII CACNNNGTG 1 cut(s) 310
DrdI GACNNNNNNGTC 1 cut(s) 679
DseDI GACNNNNNNGTC 1 cut(s) 679
Eam1104I CTCTTC 2 cut(s) 504, 710
EarI CTCTTC 2 cut(s) 504, 710
Eco130I CCWWGG 2 cut(s) 229, 607
Eco24I GRGCYC 1 cut(s) 722
Eco57I CTGAAG 2 cut(s) 800, 803
EcoRI GAATTC 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 632
EcoT14I CCWWGG 2 cut(s) 229, 607
EcoT38I GRGCYC 1 cut(s) 722
ErhI CCWWGG 2 cut(s) 229, 607
FaeI CATG 8 cut(s) 166, 205, 226, 360, 539, 553, 763, 913
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 1 cut(s) 295
FatI CATG 8 cut(s) 162, 201, 222, 356, 535, 549, 759, 909
FbaI TGATCA 1 cut(s) 36
Fnu4HI GCNGC 5 cut(s) 79, 206, 293, 328, 375
FokI GGATG 5 cut(s) 246, 257, 349, 630, 965
FriOI GRGCYC 1 cut(s) 722
Fsp4HI GCNGC 5 cut(s) 79, 206, 293, 328, 375
FspBI CTAG 1 cut(s) 507
GlaI GCGC 1 cut(s) 638
GluI GCNGC 5 cut(s) 79, 206, 293, 328, 375
GsuI CTGGAG 2 cut(s) 603, 837
HaeIII GGCC 5 cut(s) 50, 399, 687, 1030, 1108
HapII CCGG 1 cut(s) 393
HhaI GCGC 1 cut(s) 639
Hin1II CATG 8 cut(s) 166, 205, 226, 360, 539, 553, 763, 913
Hin6I GCGC 1 cut(s) 637
HinP1I GCGC 1 cut(s) 637
HindIII AAGCTT 3 cut(s) 135, 440, 791
HinfI GANTC 2 cut(s) 158, 416
HpaII CCGG 1 cut(s) 393
HphI GGTGA 2 cut(s) 916, 988
Hpy166II GTNNAC 2 cut(s) 757, 907
Hpy188I TCNGA 3 cut(s) 46, 799, 1024
Hpy188III TCNNGA 3 cut(s) 381, 393, 787
Hpy8I GTNNAC 2 cut(s) 757, 907
HpyAV CCTTC 3 cut(s) 796, 985, 1125
HpyCH4III ACNGT 3 cut(s) 847, 1093, 1129
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 8 cut(s) 205, 213, 295, 313, 377, 535, 763, 929
HpyF10VI GCNNNNNNNGC 6 cut(s) 94, 383, 487, 684, 775, 790
HpyF3I CTNAG 2 cut(s) 258, 654
HpySE526I ACGT 1 cut(s) 284
Hsp92II CATG 8 cut(s) 166, 205, 226, 360, 539, 553, 763, 913
HspAI GCGC 1 cut(s) 637
Kpn2I TCCGGA 1 cut(s) 392
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 1 cut(s) 36
LguI GCTCTTC 2 cut(s) 504, 710
LmnI GCTCC 3 cut(s) 584, 843, 895
Lsp1109I GCAGC 4 cut(s) 217, 279, 339, 361
LweI GCATC 3 cut(s) 84, 386, 473
MaeI CTAG 1 cut(s) 507
MaeII ACGT 1 cut(s) 284
MaeIII GTNAC 3 cut(s) 302, 413, 1087
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 5 cut(s) 178, 491, 536, 727, 968
MfeI CAATTG 1 cut(s) 894
MhlI GDGCHC 4 cut(s) 626, 652, 662, 722
MlyI GAGTC 1 cut(s) 410
MroI TCCGGA 1 cut(s) 392
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 3 cut(s) 447, 600, 834
MslI CAYNNNNRTG 3 cut(s) 177, 213, 357
MspCI CTTAAG 1 cut(s) 446
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 1 cut(s) 634
MunI CAATTG 1 cut(s) 894
MvaI CCWGG 1 cut(s) 634
MwoI GCNNNNNNNGC 6 cut(s) 94, 383, 487, 684, 775, 790
NdeII GATC 1 cut(s) 36
NlaIII CATG 8 cut(s) 166, 205, 226, 360, 539, 553, 763, 913
NlaIV GGNNCC 2 cut(s) 566, 623
NmuCI GTSAC 3 cut(s) 302, 413, 1087
NspI RCATGY 3 cut(s) 205, 763, 913
OliI CACNNNNGTG 1 cut(s) 357
PaeI GCATGC 1 cut(s) 205
PciSI GCTCTTC 2 cut(s) 504, 710
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 5 cut(s) 80, 207, 294, 329, 376
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
Psp6I CCWGG 1 cut(s) 632
PspGI CCWGG 1 cut(s) 632
PspN4I GGNNCC 2 cut(s) 566, 623
PspPI GGNCC 2 cut(s) 398, 686
PstNI CAGNNNCTG 1 cut(s) 940
RsaI GTAC 2 cut(s) 227, 758
RsaNI GTAC 2 cut(s) 226, 757
RseI CAYNNNNRTG 3 cut(s) 177, 213, 357
SapI GCTCTTC 2 cut(s) 504, 710
SaqAI TTAA 3 cut(s) 447, 600, 834
SatI GCNGC 5 cut(s) 79, 206, 293, 328, 375
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 2 cut(s) 398, 686
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 1 cut(s) 634
SduI GDGCHC 4 cut(s) 626, 652, 662, 722
SfaNI GCATC 3 cut(s) 84, 386, 473
SfcI CTRYAG 1 cut(s) 322
SmiMI CAYNNNNRTG 3 cut(s) 177, 213, 357
SmlI CTYRAG 2 cut(s) 89, 446
SmoI CTYRAG 2 cut(s) 89, 446
SphI GCATGC 1 cut(s) 205
SsiI CCGC 1 cut(s) 78
SspMI CTAG 1 cut(s) 507
StyD4I CCNGG 1 cut(s) 632
StyI CCWWGG 2 cut(s) 229, 607
TaaI ACNGT 3 cut(s) 847, 1093, 1129
TaiI ACGT 1 cut(s) 287
TaqI TCGA 4 cut(s) 26, 102, 118, 828
TatI WGTACW 1 cut(s) 756
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 3 cut(s) 447, 600, 834
Tru9I TTAA 3 cut(s) 447, 600, 834
TscAI CASTG 7 cut(s) 156, 215, 315, 418, 586, 850, 861
TseFI GTSAC 3 cut(s) 302, 413, 1087
TseI GCWGC 4 cut(s) 205, 292, 327, 374
Tsp45I GTSAC 3 cut(s) 302, 413, 1087
TspDTI ATGAA 4 cut(s) 179, 211, 755, 969
TspRI CASTG 7 cut(s) 156, 215, 315, 418, 586, 850, 861
Vha464I CTTAAG 1 cut(s) 446
XapI RAATTY 4 cut(s) 365, 558, 944, 970
XceI RCATGY 3 cut(s) 205, 763, 913
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.