Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0029064

Physical Location & Seq

Genomic Coordinates Forward (+)

16866711 .. 16868508

Gene Structure 1798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G213500.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGTGGTGTATGCAACTGGTGAAGAGTGCTAATTACAAGGCCACAGTGAGAGATCCTGGGACTCTTGGGGTTTTAACTATGACGGAGAACAAGTTTGTGTTCAGGCCAAACGCGTCAACAGCGAAACGAGCGCTCGATGTGGACTTCAGACAAATTACAGGTCTAAAAAACACTAAGGAGGGAGGAGATAGATCACCTTGGCTTCATCTCAGTGAAAAGGACAAAACTTACATCTTTGAGTTTGCAAGTTTTCGTGATCTTCATCTATGCCGAGAGTTTGTAGCCAATGCCGTTGCTAAGCGTGGAGAAGCTGCAAAACCTACTTCTTCTGATGAACAAATCAGTAGAGCAGAAATAATGCACCGTATGAAGCTATTACAAGAAAACAGTGAATTGCAGAAACTTCATATGCAGTATGTAATGCGTGGTGTCTTAACAGAAGCTGAATTCTGGGAAGCTAGGAAGAAGTTTGGTGATGTAGATAGCCGTCCAAAGCCCAAGCAAAGGGCTGGTTTCAGAAGCTCAATGATAATGGACACCAAACCCATGACGGATGGTCGAACGAACAAGGTTACTTTCAGTTTGACTGCAGATATTAAGTATCAGATCTTTGCCCTGAAACCAGCTGTTCATCAGGCATTTCTTGCTCTGGTTCCCAGTAAGACGACGGAGAAAGACTTCTGGACAAAGTATTTCAGAGCTGAATACCTCCAAAGCACAGGGAATGCTGCTGCAGTTGAAGCAGAAGCCGCCGATGATGAGGAATTGGCAATGCTTTTGGAGGAGGATGAGGTATTGGCGAGGGAAGCTCGTCGAAAGCTTCGACGGGTCGATCCAACTTTGGACATGGAAGCTGACCAAGGAGACGATTATACGCACCTTCCAGATCATGGGATAATATTCTTTCGGGATGTGGTTTACAAGAGGAGGAGAACTTTATCACAAGACCTTAACCGGCAAGGCGCTGTTGTTCTTCAAGGAAGAAGCATCGTTGAAGTTGATTTAGAAGATACGTCAAGTGTTGCAGAGGCGTTTAATATAATGCGGTCAAGAGAGGAGGAGGCTGATAAGAGTGGTGTGCAGGAGAGATTTGGTAGGATTGCTCGGACGACTGAGATGGAGGATGTTCAAGAACCTCACCATCTTCCTGTTGCTCAATTATTATGTATGAAGGATCCTCGAGACTACTTTGACACGCAACAAGCTAATAATAATGCAGTTAAAACTGAGGAAGCATATGGCTCCTTGAGGAAGTCTATATCTAAAATCAAGAGCATTGGATTGGGAAATTCCACAGTTGCACCAGAAATTGCTCTTGCGGTTTTTAATGGACTTCCGGCACCACCAACACCATGTCAGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000439 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006351 GO:0006355 GO:0006357 GO:0006360 GO:0006366 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016310 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070816 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

BSD PH_TFIIH

Protein Analysis

455

Amino Acids

51.5

Weight (kDa)

6.55

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029064)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G046900_v2.0.a1 Prupe.5G213500_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1339
AccB7I	CCANNNNNTGG	1 cut(s)	890
AccII	CGCG	1 cut(s)	113
AciI	CCGC	3 cut(s)	750, 1045, 1319
AclWI	GGATC	4 cut(s)	47, 827, 1169, 1182
AcsI	RAATTY	2 cut(s)	446, 1288
AcuI	CTGAAG	1 cut(s)	130
AfeI	AGCGCT	1 cut(s)	132
AfiI	CCNNNNNNNGG	2 cut(s)	504, 890
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	4 cut(s)	740, 977, 995, 1130
AhdI	GACNNNNNGTC	1 cut(s)	555
AjnI	CCWGG	1 cut(s)	55
Alw26I	GTCTC	2 cut(s)	858, 1176
AlwI	GGATC	4 cut(s)	47, 827, 1169, 1182
AlwNI	CAGNNNCTG	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	1179
Aor51HI	AGCGCT	1 cut(s)	132
AoxI	GGCC	2 cut(s)	39, 104
ApeKI	GCWGC	3 cut(s)	311, 728, 731
ApoI	RAATTY	2 cut(s)	446, 1288
ArsI	GACNNNNNNTTYG	2 cut(s)	145, 177
Asp700I	GAANNNNTTC	1 cut(s)	677
AspLEI	GCGC	2 cut(s)	133, 965
AsuHPI	GGTGA	4 cut(s)	31, 186, 485, 1130
AvaI	CYCGRG	1 cut(s)	1179
BamHI	GGATCC	1 cut(s)	1174
BanI	GGYRCC	1 cut(s)	1339
BbvI	GCAGC	3 cut(s)	298, 715, 718
BccI	CCATC	3 cut(s)	548, 1111, 1149
BceAI	ACGGC	2 cut(s)	275, 471
BciT130I	CCWGG	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	858, 1176
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	2 cut(s)	588, 732
BfoI	RGCGCY	2 cut(s)	134, 966
BglII	AGATCT	1 cut(s)	606
BisI	GCNGC	4 cut(s)	312, 729, 732, 750
BlpI	GCTNAGC	1 cut(s)	297
BlsI	GCNGC	4 cut(s)	313, 730, 733, 751
Bme1390I	CCNGG	1 cut(s)	57
BmeRI	GACNNNNNGTC	1 cut(s)	555
BmeT110I	CYCGRG	1 cut(s)	1179
BmiI	GGNNCC	4 cut(s)	654, 1176, 1243, 1341
BmrFI	CCNGG	1 cut(s)	57
BmrI	ACTGGG	1 cut(s)	651
BmsI	GCATC	1 cut(s)	996
BmuI	ACTGGG	1 cut(s)	651
BplI	GAGNNNNNCTC	2 cut(s)	793, 825
Bpu1102I	GCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	1267
BsaBI	GATNNNNATC	1 cut(s)	261
BsaJI	CCNNGG	3 cut(s)	56, 197, 859
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	2 cut(s)	504, 890
Bse118I	RCCGGY	1 cut(s)	954
Bse1I	ACTGG	2 cut(s)	21, 657
Bse3DI	GCAATG	1 cut(s)	777
Bse8I	GATNNNNATC	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	3 cut(s)	56, 197, 859
BseGI	GGATG	4 cut(s)	559, 793, 916, 1129
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	504, 890
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	3 cut(s)	223, 1104, 1218
BseNI	ACTGG	2 cut(s)	21, 657
BseRI	GAGGAG	6 cut(s)	198, 797, 940, 943, 1070, 1073
BseXI	GCAGC	3 cut(s)	298, 715, 718
BsgI	GTGCAG	1 cut(s)	1100
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	2 cut(s)	41, 106
BshNI	GGYRCC	1 cut(s)	1339
BsiHKCI	CYCGRG	1 cut(s)	1179
BsiSI	CCGG	2 cut(s)	955, 1337
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	504, 890
BsmAI	GTCTC	2 cut(s)	858, 1176
BsmBI	CGTCTC	1 cut(s)	858
BsmFI	GGGAC	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	730
BsnI	GGCC	2 cut(s)	41, 106
BsoBI	CYCGRG	1 cut(s)	1179
Bsp143I	GATC	7 cut(s)	52, 191, 256, 606, 832, 886, 1174
Bsp1720I	GCTNAGC	1 cut(s)	297
BspACI	CCGC	3 cut(s)	750, 1045, 1319
BspANI	GGCC	2 cut(s)	41, 106
BspCNI	CTCAG	3 cut(s)	222, 1105, 1219
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	4 cut(s)	654, 1176, 1243, 1341
BspMAI	CTGCAG	2 cut(s)	592, 736
BspPI	GGATC	4 cut(s)	47, 827, 1169, 1182
BspT107I	GGYRCC	1 cut(s)	1339
BsrDI	GCAATG	1 cut(s)	777
BsrFI	RCCGGY	1 cut(s)	954
BsrI	ACTGG	2 cut(s)	21, 657
BssAI	RCCGGY	1 cut(s)	954
BssECI	CCNNGG	3 cut(s)	56, 197, 859
BssMI	GATC	7 cut(s)	52, 191, 256, 606, 832, 886, 1174
BssT1I	CCWWGG	2 cut(s)	197, 859
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	4 cut(s)	46, 365, 389, 1297
Bst6I	CTCTTC	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstDEI	CTNAG	5 cut(s)	174, 209, 297, 1113, 1227
BstF5I	GGATG	4 cut(s)	559, 793, 916, 1129
BstFNI	CGCG	1 cut(s)	113
BstH2I	RGCGCY	2 cut(s)	134, 966
BstHHI	GCGC	2 cut(s)	133, 965
BstKTI	GATC	7 cut(s)	55, 194, 259, 609, 835, 889, 1177
BstMAI	GTCTC	2 cut(s)	858, 1176
BstMBI	GATC	7 cut(s)	52, 191, 256, 606, 832, 886, 1174
BstMWI	GCNNNNNNNGC	6 cut(s)	119, 128, 644, 740, 749, 806
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	2 cut(s)	588, 732
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	3 cut(s)	298, 715, 718
BstX2I	RGATCY	3 cut(s)	52, 606, 1174
BstYI	RGATCY	3 cut(s)	52, 606, 1174
BsuRI	GGCC	2 cut(s)	41, 106
BtsCI	GGATG	4 cut(s)	559, 793, 916, 1129
BtsIMutI	CAGTG	4 cut(s)	51, 217, 394, 1364
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	2 cut(s)	133, 965
Cfr10I	RCCGGY	1 cut(s)	954
CseI	GACGC	1 cut(s)	102
CviAII	CATG	4 cut(s)	547, 847, 890, 1353
DdeI	CTNAG	5 cut(s)	174, 209, 297, 1113, 1227
DpnI	GATC	7 cut(s)	54, 193, 258, 608, 834, 888, 1176
DpnII	GATC	7 cut(s)	52, 191, 256, 606, 832, 886, 1174
DriI	GACNNNNNGTC	1 cut(s)	555
Eam1104I	CTCTTC	1 cut(s)	17
Eam1105I	GACNNNNNGTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	197, 859
Eco47III	AGCGCT	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	130
Eco88I	CYCGRG	1 cut(s)	1179
EcoRI	GAATTC	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	197, 859
ErhI	CCWWGG	2 cut(s)	197, 859
Esp3I	CGTCTC	1 cut(s)	858
FaeI	CATG	4 cut(s)	550, 850, 893, 1356
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	4 cut(s)	546, 846, 889, 1352
FauNDI	CATATG	2 cut(s)	408, 1237
Fnu4HI	GCNGC	4 cut(s)	312, 729, 732, 750
FokI	GGATG	4 cut(s)	566, 800, 923, 1136
Fsp4HI	GCNGC	4 cut(s)	312, 729, 732, 750
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	2 cut(s)	132, 964
GluI	GCNGC	4 cut(s)	312, 729, 732, 750
HaeII	RGCGCY	2 cut(s)	134, 966
HaeIII	GGCC	2 cut(s)	41, 106
HapII	CCGG	2 cut(s)	955, 1337
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	2 cut(s)	133, 965
Hin1II	CATG	4 cut(s)	550, 850, 893, 1356
Hin6I	GCGC	2 cut(s)	131, 963
HinP1I	GCGC	2 cut(s)	131, 963
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	818
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	2 cut(s)	955, 1337
HphI	GGTGA	4 cut(s)	31, 186, 485, 1130
Hpy166II	GTNNAC	3 cut(s)	117, 142, 919
Hpy188I	TCNGA	6 cut(s)	149, 331, 518, 606, 698, 1107
Hpy188III	TCNNGA	8 cut(s)	254, 682, 884, 908, 1050, 1130, 1181, 1270
Hpy8I	GTNNAC	3 cut(s)	117, 142, 919
Hpy99I	CGWCG	3 cut(s)	670, 816, 828
HpyAV	CCTTC	2 cut(s)	890, 1165
HpyCH4III	ACNGT	4 cut(s)	46, 365, 389, 1297
HpyCH4IV	ACGT	1 cut(s)	1013
HpyF10VI	GCNNNNNNNGC	6 cut(s)	119, 128, 644, 740, 749, 806
HpyF3I	CTNAG	5 cut(s)	174, 209, 297, 1113, 1227
HpySE526I	ACGT	1 cut(s)	1013
Hsp92II	CATG	4 cut(s)	550, 850, 893, 1356
HspAI	GCGC	2 cut(s)	131, 963
Kzo9I	GATC	7 cut(s)	52, 191, 256, 606, 832, 886, 1174
LmnI	GCTCC	1 cut(s)	1247
Lsp1109I	GCAGC	3 cut(s)	298, 715, 718
LweI	GCATC	1 cut(s)	996
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	1013
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	7 cut(s)	54, 193, 258, 608, 834, 888, 1176
MboI	GATC	7 cut(s)	52, 191, 256, 606, 832, 886, 1174
MboII	GAAGA	8 cut(s)	34, 251, 318, 475, 965, 993, 1019, 1136
MflI	RGATCY	3 cut(s)	52, 606, 1174
MluCI	AATT	8 cut(s)	31, 153, 392, 446, 764, 1157, 1288, 1308
MluI	ACGCGT	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	55
MmeI	TCCRAC	1 cut(s)	860
MroXI	GAANNNNTTC	1 cut(s)	677
MseI	TTAA	8 cut(s)	74, 434, 597, 951, 1035, 1221, 1326, 1363
MslI	CAYNNNNRTG	2 cut(s)	210, 1357
MspA1I	CMGCKG	1 cut(s)	626
MspI	CCGG	2 cut(s)	955, 1337
MspR9I	CCNGG	1 cut(s)	57
Mva1269I	GAATGC	1 cut(s)	730
MvaI	CCWGG	1 cut(s)	57
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	6 cut(s)	119, 128, 644, 740, 749, 806
NdeI	CATATG	2 cut(s)	408, 1237
NdeII	GATC	7 cut(s)	52, 191, 256, 606, 832, 886, 1174
NlaIII	CATG	4 cut(s)	550, 850, 893, 1356
NlaIV	GGNNCC	4 cut(s)	654, 1176, 1243, 1341
NmeAIII	GCCGAG	1 cut(s)	296
PaeR7I	CTCGAG	1 cut(s)	1179
PcsI	WCGNNNNNNNCGW	1 cut(s)	820
PctI	GAATGC	1 cut(s)	730
PdmI	GAANNNNTTC	1 cut(s)	677
PflMI	CCANNNNNTGG	1 cut(s)	890
PkrI	GCNGC	4 cut(s)	313, 730, 733, 751
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	4 cut(s)	654, 1176, 1243, 1341
PstI	CTGCAG	2 cut(s)	592, 736
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	3 cut(s)	52, 606, 1174
PvuII	CAGCTG	1 cut(s)	626
RseI	CAYNNNNRTG	2 cut(s)	210, 1357
SaqAI	TTAA	8 cut(s)	74, 434, 597, 951, 1035, 1221, 1326, 1363
SatI	GCNGC	4 cut(s)	312, 729, 732, 750
Sau3AI	GATC	7 cut(s)	52, 191, 256, 606, 832, 886, 1174
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	57
SfaNI	GCATC	1 cut(s)	996
SfcI	CTRYAG	2 cut(s)	588, 732
Sfr274I	CTCGAG	1 cut(s)	1179
SlaI	CTCGAG	1 cut(s)	1179
SmiMI	CAYNNNNRTG	2 cut(s)	210, 1357
SmlI	CTYRAG	2 cut(s)	1179, 1246
SmoI	CTYRAG	2 cut(s)	1179, 1246
Sse9I	AATT	8 cut(s)	31, 153, 392, 446, 764, 1157, 1288, 1308
SsiI	CCGC	3 cut(s)	750, 1045, 1319
SspI	AATATT	1 cut(s)	900
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	2 cut(s)	197, 859
TaaI	ACNGT	4 cut(s)	46, 365, 389, 1297
TaiI	ACGT	1 cut(s)	1016
TaqI	TCGA	6 cut(s)	135, 559, 814, 823, 831, 1180
TasI	AATT	8 cut(s)	31, 153, 392, 446, 764, 1157, 1288, 1308
TauI	GCSGC	1 cut(s)	752
Tru1I	TTAA	8 cut(s)	74, 434, 597, 951, 1035, 1221, 1326, 1363
Tru9I	TTAA	8 cut(s)	74, 434, 597, 951, 1035, 1221, 1326, 1363
TscAI	CASTG	4 cut(s)	51, 217, 394, 1364
TseI	GCWGC	3 cut(s)	311, 728, 731
TspDTI	ATGAA	7 cut(s)	194, 251, 348, 383, 395, 620, 1184
TspGWI	ACGGA	3 cut(s)	98, 566, 683
TspRI	CASTG	4 cut(s)	51, 217, 394, 1364
Van91I	CCANNNNNTGG	1 cut(s)	890
XapI	RAATTY	2 cut(s)	446, 1288
XhoI	CTCGAG	1 cut(s)	1179
XmnI	GAANNNNTTC	1 cut(s)	677
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.