Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0029005

Physical Location & Seq

Genomic Coordinates Forward (+)

18492728 .. 18494773

Gene Structure 2046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G179600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAAAGAAAAAGAATGAGGATAGTAGGACTGACAGGTGGAATTGCATCCGGGAAGAGCACGGTCTCAAATCTCTTCAAGGCCCATGACTTTCCCGTCGTTGAGGCAGATCTTGTTGCTCGTGATGTATTAAAGAAGGGCAAAACTGGGTGGAAAAAGGTTGTTTCAGCATTTGGAGATGACATTTTACAACCTGATGGAGAAGTTGATAGGCCTAAACTAGGCCAAATTATATTCTCTAATCCCGAAAAGCGCAAACTTCTGAATCGAGTGCTGGCTCCTTACATATGGTTTGGAATCTTTTGGGAAGTTTTGAAGCTATGGATGGAGGGGTTTAAGATTATTGTTGTTGATGTTCCTCTATTGTTCGAGGCCAAGATGGAAAAATGGACAAAGCCCATTGTTTTGGTATGGGTTGATTCTGAAACACAGCTCCAGAGACTCATGTTGAGGGACAGTACAAGTGAGGATGATGCTCAGAACAGGATAAATGCTCAGATGTCACTTGATTTGAAAAAGACCAAGGCAGACCTAGTGATTGATAATACTGGTTCACTAAAGGATTTAAGAGAACAGTTTCGCAGTATCTTAGTTATCATCACGAAGCCCTTGACGTGGACTGAATTCGGGTTCTCTAGACGAGGTGTCGCGCTGTTTCTTCTCTCCATTGTTGTAGGTGTTTTGATGTACTTTCAGAGAAGTTTATATACTAGTAGTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

241

Amino Acids

27.42

Weight (kDa)

9.61

Isoelectric Point (pI)

26.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029005)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G179600_v2.0.a1 Prupe.6G179600_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccII	CGCG	1 cut(s)	650
AcsI	RAATTY	1 cut(s)	623
AfaI	GTAC	2 cut(s)	460, 689
AfiI	CCNNNNNNNGG	2 cut(s)	221, 615
AgsI	TTSAA	3 cut(s)	79, 316, 514
AhdI	GACNNNNNGTC	1 cut(s)	644
AhlI	ACTAGT	1 cut(s)	710
AjiI	CACGTC	1 cut(s)	615
AluBI	AGCT	2 cut(s)	319, 433
AluI	AGCT	2 cut(s)	319, 433
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	2 cut(s)	70, 433
AoxI	GGCC	4 cut(s)	81, 212, 223, 372
ApoI	RAATTY	1 cut(s)	623
Asp700I	GAANNNNTTC	1 cut(s)	576
AspLEI	GCGC	2 cut(s)	255, 652
AspS9I	GGNCC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	52
BarI	GAAGNNNNNNTAC	2 cut(s)	691, 723
BauI	CACGAG	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	62
BccI	CCATC	3 cut(s)	191, 319, 373
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	2 cut(s)	70, 433
BcuI	ACTAGT	1 cut(s)	710
BfaI	CTAG	4 cut(s)	221, 533, 636, 711
BglII	AGATCT	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	52
BmeRI	GACNNNNNGTC	1 cut(s)	644
BmgBI	CACGTC	1 cut(s)	615
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	52
BmrI	ACTGGG	1 cut(s)	156
BmsI	GCATC	2 cut(s)	56, 463
BmuI	ACTGGG	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	52
BsaI	GGTCTC	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	522
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 615
Bse1I	ACTGG	2 cut(s)	151, 553
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	3 cut(s)	47, 330, 475
BseLI	CCNNNNNNNGG	2 cut(s)	221, 615
BseMII	CTCAG	2 cut(s)	491, 509
BseNI	ACTGG	2 cut(s)	151, 553
Bsh1236I	CGCG	1 cut(s)	650
BshFI	GGCC	4 cut(s)	83, 214, 225, 374
BsiHKAI	GWGCWC	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	2 cut(s)	221, 615
BsmAI	GTCTC	2 cut(s)	70, 433
BsmFI	GGGAC	1 cut(s)	467
BsnI	GGCC	4 cut(s)	83, 214, 225, 374
Bso31I	GGTCTC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	109
BspANI	GGCC	4 cut(s)	83, 214, 225, 374
BspCNI	CTCAG	2 cut(s)	490, 508
BspFNI	CGCG	1 cut(s)	650
BspLI	GGNNCC	1 cut(s)	279
BspQI	GCTCTTC	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	151, 553
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	1 cut(s)	109
BssSI	CACGAG	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	522
Bst2BI	CACGAG	1 cut(s)	120
Bst4CI	ACNGT	3 cut(s)	64, 458, 576
Bst6I	CTCTTC	2 cut(s)	50, 80
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	3 cut(s)	477, 495, 589
BstENI	CCTNNNNNAGG	1 cut(s)	219
BstF5I	GGATG	3 cut(s)	47, 330, 475
BstFNI	CGCG	1 cut(s)	650
BstHHI	GCGC	2 cut(s)	255, 652
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	2 cut(s)	70, 433
BstMBI	GATC	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	50
BstUI	CGCG	1 cut(s)	650
BstX2I	RGATCY	1 cut(s)	109
BstXI	CCANNNNNNTGG	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	4 cut(s)	83, 214, 225, 374
BtrI	CACGTC	1 cut(s)	615
BtsCI	GGATG	3 cut(s)	47, 330, 475
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	2 cut(s)	255, 652
Cfr13I	GGNCC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	459, 688
CviAII	CATG	2 cut(s)	86, 445
CviJI	RGCY	9 cut(s)	83, 214, 225, 278, 319, 374, 397, 433, 607
CviKI_1	RGCY	9 cut(s)	83, 214, 225, 278, 319, 374, 397, 433, 607
CviQI	GTAC	2 cut(s)	459, 688
DdeI	CTNAG	3 cut(s)	477, 495, 589
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
DrdI	GACNNNNNNGTC	1 cut(s)	95
DriI	GACNNNNNGTC	1 cut(s)	644
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	2 cut(s)	50, 80
Eam1105I	GACNNNNNGTC	1 cut(s)	644
EarI	CTCTTC	2 cut(s)	50, 80
Eco130I	CCWWGG	1 cut(s)	522
Eco147I	AGGCCT	1 cut(s)	214
Eco31I	GGTCTC	1 cut(s)	70
EcoNI	CCTNNNNNAGG	1 cut(s)	219
EcoRI	GAATTC	1 cut(s)	623
EcoT14I	CCWWGG	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	2 cut(s)	89, 448
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	2 cut(s)	85, 444
FauNDI	CATATG	1 cut(s)	287
FokI	GGATG	3 cut(s)	34, 337, 482
FspBI	CTAG	4 cut(s)	221, 533, 636, 711
GlaI	GCGC	2 cut(s)	254, 651
GsuI	CTGGAG	1 cut(s)	419
HaeIII	GGCC	4 cut(s)	83, 214, 225, 374
HapII	CCGG	1 cut(s)	51
HhaI	GCGC	2 cut(s)	255, 652
Hin1II	CATG	2 cut(s)	89, 448
Hin6I	GCGC	2 cut(s)	253, 650
HinP1I	GCGC	2 cut(s)	253, 650
HinfI	GANTC	4 cut(s)	265, 297, 419, 441
HpaII	CCGG	1 cut(s)	51
Hpy166II	GTNNAC	2 cut(s)	554, 618
Hpy188I	TCNGA	5 cut(s)	264, 424, 480, 498, 696
Hpy188III	TCNNGA	5 cut(s)	122, 245, 436, 601, 636
Hpy8I	GTNNAC	2 cut(s)	554, 618
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	3 cut(s)	64, 458, 576
HpyCH4IV	ACGT	1 cut(s)	614
HpyCH4V	TGCA	1 cut(s)	47
HpyF3I	CTNAG	3 cut(s)	477, 495, 589
HpySE526I	ACGT	1 cut(s)	614
Hsp92II	CATG	2 cut(s)	89, 448
HspAI	GCGC	2 cut(s)	253, 650
Kzo9I	GATC	1 cut(s)	109
LguI	GCTCTTC	1 cut(s)	50
LmnI	GCTCC	2 cut(s)	283, 438
LpnPI	CCDG	8 cut(s)	21, 64, 132, 207, 260, 449, 469, 534
LweI	GCATC	2 cut(s)	56, 463
MaeI	CTAG	4 cut(s)	221, 533, 636, 711
MaeII	ACGT	1 cut(s)	614
MaeIII	GTNAC	1 cut(s)	501
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	3 cut(s)	67, 67, 650
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	3 cut(s)	42, 228, 623
MlyI	GAGTC	1 cut(s)	435
MnlI	CCTC	8 cut(s)	12, 97, 322, 364, 369, 444, 460, 635
MroXI	GAANNNNTTC	1 cut(s)	576
MseI	TTAA	3 cut(s)	131, 336, 566
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	52
MvnI	CGCG	1 cut(s)	650
NciI	CCSGG	1 cut(s)	52
NdeI	CATATG	1 cut(s)	287
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	2 cut(s)	89, 448
NlaIV	GGNNCC	1 cut(s)	279
NmuCI	GTSAC	1 cut(s)	501
PceI	AGGCCT	1 cut(s)	214
PciSI	GCTCTTC	1 cut(s)	50
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	3 cut(s)	265, 297, 419
PfoI	TCCNGGA	1 cut(s)	50
PleI	GAGTC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	435
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	2 cut(s)	460, 689
RsaNI	GTAC	2 cut(s)	459, 688
SapI	GCTCTTC	1 cut(s)	50
SaqAI	TTAA	3 cut(s)	131, 336, 566
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	435
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	9 cut(s)	40, 162, 196, 321, 435, 534, 617, 646, 679
SfaNI	GCATC	2 cut(s)	56, 463
SpeI	ACTAGT	1 cut(s)	710
Sse9I	AATT	3 cut(s)	42, 228, 623
SseBI	AGGCCT	1 cut(s)	214
SspMI	CTAG	4 cut(s)	221, 533, 636, 711
StuI	AGGCCT	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	3 cut(s)	64, 458, 576
TaiI	ACGT	1 cut(s)	617
TaqI	TCGA	2 cut(s)	268, 369
TasI	AATT	3 cut(s)	42, 228, 623
TatI	WGTACW	2 cut(s)	458, 687
TfiI	GAWTC	3 cut(s)	265, 297, 419
Tru1I	TTAA	3 cut(s)	131, 336, 566
Tru9I	TTAA	3 cut(s)	131, 336, 566
TseFI	GTSAC	1 cut(s)	501
Tsp45I	GTSAC	1 cut(s)	501
XagI	CCTNNNNNAGG	1 cut(s)	219
XapI	RAATTY	1 cut(s)	623
XbaI	TCTAGA	1 cut(s)	635
XmnI	GAANNNNTTC	1 cut(s)	576
XspI	CTAG	4 cut(s)	221, 533, 636, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.