Prupe.6G216600_v2.0.a1

Belongs to the PdxS SNZ family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
22389177 .. 22390458
1282 bp
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UTR
Exon/CDS
Intron
Prupe.6G216600.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 156 bp
ATGTTTGGGAAGAGAATCGCGGCGCCGTACGATCTTATGAAGCAGACGAAGCAGCTTGGGAGGCTTCCGGTGGTGCATTTCGCCGCCCGTGGCGTGGCGACGCCTGCGAACGCGGCGTTGATGATGCAGTTGGGGTTCTTTTCGGGTTGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

52

Amino Acids

5.61

Weight (kDa)

10.43

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028555)

Species Orthologous Gene IDs
malus_domestica MD16G1213800.v1.1
prunus_persica Prupe.6G216600_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AccII CGCG 2 cut(s) 20, 113
AciI CCGC 3 cut(s) 20, 84, 113
AcyI GRCGYC 2 cut(s) 23, 101
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 94
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 52
AspLEI GCGC 1 cut(s) 25
BanI GGYRCC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 64
BceAI ACGGC 1 cut(s) 10
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 4 cut(s) 21, 53, 84, 114
BlsI GCNGC 4 cut(s) 22, 54, 85, 115
BmiI GGNNCC 1 cut(s) 24
BmsI GCATC 1 cut(s) 114
BsaHI GRCGYC 2 cut(s) 23, 101
BsaJI CCNNGG 1 cut(s) 88
BsaWI WCCGGW 1 cut(s) 67
Bsc4I CCNNNNNNNGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 94
BseXI GCAGC 1 cut(s) 64
Bsh1236I CGCG 2 cut(s) 20, 113
BshNI GGYRCC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 68
BsiWI CGTACG 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 94
Bsp143I GATC 1 cut(s) 31
BspACI CCGC 3 cut(s) 20, 84, 113
BspFNI CGCG 2 cut(s) 20, 113
BspLI GGNNCC 1 cut(s) 24
BspT107I GGYRCC 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 1 cut(s) 31
BssNI GRCGYC 2 cut(s) 23, 101
Bst6I CTCTTC 1 cut(s) 5
BstACI GRCGYC 2 cut(s) 23, 101
BstC8I GCNNGC 1 cut(s) 105
BstDSI CCRYGG 1 cut(s) 88
BstFNI CGCG 2 cut(s) 20, 113
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 4 cut(s) 49, 61, 104, 113
BstUI CGCG 2 cut(s) 20, 113
BstV1I GCAGC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 105
CfoI GCGC 1 cut(s) 25
CseI GACGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 28
CviJI RGCY 2 cut(s) 55, 64
CviKI_1 RGCY 2 cut(s) 55, 64
CviQI GTAC 1 cut(s) 28
DinI GGCGCC 1 cut(s) 24
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
EgeI GGCGCC 1 cut(s) 24
EheI GGCGCC 1 cut(s) 24
FaiI YATR 1 cut(s) 38
Fnu4HI GCNGC 4 cut(s) 21, 53, 84, 114
Fsp4HI GCNGC 4 cut(s) 21, 53, 84, 114
GlaI GCGC 1 cut(s) 24
GluI GCNGC 4 cut(s) 21, 53, 84, 114
HaeII RGCGCY 1 cut(s) 26
HapII CCGG 1 cut(s) 68
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 25
Hin1I GRCGYC 2 cut(s) 23, 101
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HinfI GANTC 1 cut(s) 15
HpaII CCGG 1 cut(s) 68
Hpy99I CGWCG 1 cut(s) 103
HpyCH4V TGCA 2 cut(s) 76, 127
HpyF10VI GCNNNNNNNGC 4 cut(s) 49, 61, 104, 113
Hsp92I GRCGYC 2 cut(s) 23, 101
HspAI GCGC 1 cut(s) 23
KasI GGCGCC 1 cut(s) 22
Kzo9I GATC 1 cut(s) 31
LpnPI CCDG 2 cut(s) 81, 117
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 114
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 1 cut(s) 22
Mly113I GGCGCC 1 cut(s) 23
MnlI CCTC 1 cut(s) 54
MseI TTAA 1 cut(s) 154
MspI CCGG 1 cut(s) 68
MvnI CGCG 2 cut(s) 20, 113
MwoI GCNNNNNNNGC 4 cut(s) 49, 61, 104, 113
NarI GGCGCC 1 cut(s) 23
NdeII GATC 1 cut(s) 31
NlaIV GGNNCC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 15
Pfl23II CGTACG 1 cut(s) 27
PkrI GCNGC 4 cut(s) 22, 54, 85, 115
PluTI GGCGCC 1 cut(s) 26
PspLI CGTACG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 24
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 154
SatI GCNGC 4 cut(s) 21, 53, 84, 114
Sau3AI GATC 1 cut(s) 31
SetI ASST 1 cut(s) 57
SfaNI GCATC 1 cut(s) 114
SfoI GGCGCC 1 cut(s) 24
SgeI CNNG 8 cut(s) 31, 68, 80, 99, 101, 106, 116, 124
SsiI CCGC 3 cut(s) 20, 84, 113
SspDI GGCGCC 1 cut(s) 22
TauI GCSGC 3 cut(s) 23, 86, 116
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 1 cut(s) 154
Tru9I TTAA 1 cut(s) 154
TseI GCWGC 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.