Prupe.6G252100_v2.0.a1

Glycine-rich RNA-binding protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
24651636 .. 24653718
2083 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G252100.2

Sequence Viewer

Length: 408 bp
ATGGCGCTGAGGGCAGGACTTGTAAGGCGATTTCTGTCTACTCCAGTCTTCGCTTCTCAATCTAGAGCTGCTGCAACTGCTGCGTCCTTGGCTTATGCCTCTGTTGCTGATTCCAACAACATCAGTGATAAAGCTACCGCAGAACCTAGCACCACTCTCTTCGTCGCTGGGCTTAACAAGAGAACCACGCCTGAAAAACTTAACGAAGCGTTCTCACAATTTGGTGAAGTGGTTAATGTAAAGGTAGTGATAGACCGTGATTCTGGATTCTCAAAGGGCTTTGGGTTTGTGAATTATGCCACTTTAGAGGACGCCGAGAAAGGGGTGAAAGGGATGGATGCACAGGTTCTTGATGGATGGGTCATTTTTACTGAATTTGCACGACCAAAAAGAATTCCAGGACAGTGA

Protein Analysis

136

Amino Acids

14.48

Weight (kDa)

9.05

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029025)

Species Orthologous Gene IDs
prunus_persica Prupe.6G252100_v2.0.a1 Prupe.6G252100_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 38
AciI CCGC 1 cut(s) 138
AcsI RAATTY 2 cut(s) 374, 393
AcyI GRCGYC 1 cut(s) 312
AfiI CCNNNNNNNGG 1 cut(s) 321
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 2 cut(s) 68, 134
AluI AGCT 2 cut(s) 68, 134
ApeKI GCWGC 3 cut(s) 68, 71, 80
ApoI RAATTY 2 cut(s) 374, 393
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 236, 337
BbsI GAAGAC 1 cut(s) 40
BbvCI CCTCAGC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 55, 58, 67
BccI CCATC 3 cut(s) 328, 347, 351
BciT130I CCWGG 1 cut(s) 399
BfaI CTAG 2 cut(s) 63, 147
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 3 cut(s) 69, 72, 81
BlsI GCNGC 3 cut(s) 70, 73, 82
Bme1390I CCNGG 1 cut(s) 399
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 40
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse1I ACTGG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 3 cut(s) 339, 343, 362
BseLI CCNNNNNNNGG 1 cut(s) 321
BseNI ACTGG 1 cut(s) 44
BseXI GCAGC 3 cut(s) 55, 58, 67
BseYI CCCAGC 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 321
BspACI CCGC 1 cut(s) 138
BsrI ACTGG 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 87
BssNI GRCGYC 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 2 cut(s) 257, 405
Bst6I CTCTTC 1 cut(s) 164
BstACI GRCGYC 1 cut(s) 312
BstAPI GCANNNNNTGC 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 3 cut(s) 339, 343, 362
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstMWI GCNNNNNNNGC 5 cut(s) 11, 77, 80, 89, 104
BstNI CCWGG 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 397
BstV1I GCAGC 3 cut(s) 55, 58, 67
BstV2I GAAGAC 1 cut(s) 40
BtsCI GGATG 3 cut(s) 339, 343, 362
BtsIMutI CAGTG 1 cut(s) 130
CfoI GCGC 1 cut(s) 7
CseI GACGC 2 cut(s) 72, 320
CviJI RGCY 5 cut(s) 68, 92, 134, 172, 279
CviKI_1 RGCY 5 cut(s) 68, 92, 134, 172, 279
DdeI CTNAG 1 cut(s) 8
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco130I CCWWGG 1 cut(s) 87
EcoRI GAATTC 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaiI YATR 2 cut(s) 96, 297
FblI GTMKAC 1 cut(s) 38
Fnu4HI GCNGC 3 cut(s) 69, 72, 81
FokI GGATG 3 cut(s) 346, 350, 369
Fsp4HI GCNGC 3 cut(s) 69, 72, 81
FspBI CTAG 2 cut(s) 63, 147
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 69, 72, 81
GsaI CCCAGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 27
HaeII RGCGCY 1 cut(s) 8
HgaI GACGC 2 cut(s) 72, 320
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 312
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 3 cut(s) 110, 260, 267
HphI GGTGA 2 cut(s) 236, 337
Hpy166II GTNNAC 1 cut(s) 39
Hpy188III TCNNGA 3 cut(s) 63, 264, 350
Hpy8I GTNNAC 1 cut(s) 39
Hpy99I CGWCG 1 cut(s) 167
HpyCH4III ACNGT 2 cut(s) 257, 405
HpyCH4V TGCA 3 cut(s) 74, 341, 380
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 77, 80, 89, 104
HpyF3I CTNAG 1 cut(s) 8
Hsp92I GRCGYC 1 cut(s) 312
HspAI GCGC 1 cut(s) 5
LpnPI CCDG 6 cut(s) 57, 153, 204, 249, 329, 384
Lsp1109I GCAGC 3 cut(s) 55, 58, 67
LweI GCATC 1 cut(s) 328
MaeI CTAG 2 cut(s) 63, 147
MboII GAAGA 2 cut(s) 40, 151
MluCI AATT 4 cut(s) 218, 292, 374, 393
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 3 cut(s) 3, 109, 301
MseI TTAA 3 cut(s) 174, 201, 234
MspR9I CCNGG 1 cut(s) 399
MvaI CCWGG 1 cut(s) 399
MwoI GCNNNNNNNGC 5 cut(s) 11, 77, 80, 89, 104
NmeAIII GCCGAG 1 cut(s) 340
PfeI GAWTC 3 cut(s) 110, 260, 267
PfoI TCCNGGA 1 cut(s) 397
PkrI GCNGC 3 cut(s) 70, 73, 82
Psp6I CCWGG 1 cut(s) 397
PspFI CCCAGC 1 cut(s) 167
PspGI CCWGG 1 cut(s) 397
SaqAI TTAA 3 cut(s) 174, 201, 234
SatI GCNGC 3 cut(s) 69, 72, 81
ScrFI CCNGG 1 cut(s) 399
SetI ASST 5 cut(s) 70, 136, 148, 246, 348
SfaNI GCATC 1 cut(s) 328
Sse9I AATT 4 cut(s) 218, 292, 374, 393
SsiI CCGC 1 cut(s) 138
SspMI CTAG 2 cut(s) 63, 147
StyD4I CCNGG 1 cut(s) 397
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 257, 405
TasI AATT 4 cut(s) 218, 292, 374, 393
TfiI GAWTC 3 cut(s) 110, 260, 267
Tru1I TTAA 3 cut(s) 174, 201, 234
Tru9I TTAA 3 cut(s) 174, 201, 234
TscAI CASTG 1 cut(s) 130
TseI GCWGC 3 cut(s) 68, 71, 80
TspRI CASTG 1 cut(s) 130
XapI RAATTY 2 cut(s) 374, 393
XbaI TCTAGA 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 38
XspI CTAG 2 cut(s) 63, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.