Prupe.6G260100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0029032
Physical Location & Seq
Forward (+)
25088522 .. 25091234
2713 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G260100.1

Sequence Viewer

Length: 291 bp
ATGCTTGGCCGTTCGATCGGCCCATGGTTGGAACACATGAGCCCTAATTTCAACACCATCACCACCTCTCCCTCGTCAAACTCCCCATTGAGCCTCCTGTCCACAATATCAAGCAGCCTGCCTTCTCTGTACATTTCCCAAACCCAGTCCACCAAAACCAGCTCCTCAGCCACTGCCTTGGGCTCAATGGGCCTTCTTCCACAGGCCACCTCAAGCAAAAGCGCGCCAAATGCATACACGTCAGAGGCAGTGCTGGCCTTACCAGTCCTCGGCAGCTCTGGTGCTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

9.76

Weight (kDa)

9.4

Isoelectric Point (pI)

66.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029032)

Species Orthologous Gene IDs
prunus_persica Prupe.6G260100_v2.0.a1
pyrus_communis pycom01g15850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 7
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 2 cut(s) 28, 269
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 1 cut(s) 52
AjiI CACGTC 1 cut(s) 240
AluBI AGCT 2 cut(s) 162, 276
AluI AGCT 2 cut(s) 162, 276
AlwNI CAGNNNCTG 1 cut(s) 173
AoxI GGCC 5 cut(s) 7, 19, 190, 204, 255
ApeKI GCWGC 2 cut(s) 114, 273
AspLEI GCGC 2 cut(s) 224, 226
AspS9I GGNCC 2 cut(s) 20, 190
AsuHPI GGTGA 1 cut(s) 52
BanII GRGCYC 2 cut(s) 44, 185
BbvCI CCTCAGC 1 cut(s) 166
BbvI GCAGC 2 cut(s) 126, 285
BccI CCATC 1 cut(s) 65
BisI GCNGC 2 cut(s) 115, 274
BlsI GCNGC 2 cut(s) 116, 275
BmgBI CACGTC 1 cut(s) 240
BmgT120I GGNCC 2 cut(s) 20, 190
BmrI ACTGGG 1 cut(s) 139
BmuI ACTGGG 1 cut(s) 139
Bpu10I CCTNAGC 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 196
BsaJI CCNNGG 3 cut(s) 23, 177, 268
BsaXI ACNNNNNCTCC 2 cut(s) 52, 82
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 269
Bse1I ACTGG 2 cut(s) 145, 263
BseDI CCNNGG 3 cut(s) 23, 177, 268
BseLI CCNNNNNNNGG 2 cut(s) 28, 269
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 2 cut(s) 145, 263
BsePI GCGCGC 1 cut(s) 222
BseRI GAGGAG 1 cut(s) 154
BseXI GCAGC 2 cut(s) 126, 285
Bsh1236I CGCG 1 cut(s) 224
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 5 cut(s) 9, 21, 192, 206, 257
BsiEI CGRYCG 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 28, 269
BsnI GGCC 5 cut(s) 9, 21, 192, 206, 257
Bsp1286I GDGCHC 2 cut(s) 44, 185
Bsp1407I TGTACA 1 cut(s) 129
Bsp143I GATC 1 cut(s) 15
Bsp19I CCATGG 1 cut(s) 23
BspANI GGCC 5 cut(s) 9, 21, 192, 206, 257
BspCNI CTCAG 1 cut(s) 179
BspFNI CGCG 1 cut(s) 224
BsrGI TGTACA 1 cut(s) 129
BsrI ACTGG 2 cut(s) 145, 263
BssECI CCNNGG 3 cut(s) 23, 177, 268
BssHII GCGCGC 1 cut(s) 222
BssMI GATC 1 cut(s) 15
BssT1I CCWWGG 2 cut(s) 23, 177
BstAUI TGTACA 1 cut(s) 129
BstC8I GCNNGC 3 cut(s) 119, 224, 255
BstDEI CTNAG 1 cut(s) 166
BstDSI CCRYGG 1 cut(s) 23
BstFNI CGCG 1 cut(s) 224
BstHHI GCGC 2 cut(s) 224, 226
BstKTI GATC 1 cut(s) 18
BstMBI GATC 1 cut(s) 15
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 3 cut(s) 189, 230, 254
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 2 cut(s) 126, 285
BstXI CCANNNNNNTGG 1 cut(s) 178
BsuRI GGCC 5 cut(s) 9, 21, 192, 206, 257
BtgI CCRYGG 1 cut(s) 23
BtrI CACGTC 1 cut(s) 240
BtsI GCAGTG 2 cut(s) 171, 255
BtsIMutI CAGTG 2 cut(s) 171, 255
Cac8I GCNNGC 3 cut(s) 119, 224, 255
CaiI CAGNNNCTG 1 cut(s) 173
CfoI GCGC 2 cut(s) 224, 226
Cfr13I GGNCC 2 cut(s) 20, 190
Csp6I GTAC 1 cut(s) 130
CviAII CATG 2 cut(s) 24, 37
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 1 cut(s) 166
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
EaeI YGGCCR 1 cut(s) 7
Eco130I CCWWGG 2 cut(s) 23, 177
Eco24I GRGCYC 2 cut(s) 44, 185
EcoT14I CCWWGG 2 cut(s) 23, 177
EcoT22I ATGCAT 1 cut(s) 235
EcoT38I GRGCYC 2 cut(s) 44, 185
ErhI CCWWGG 2 cut(s) 23, 177
FaeI CATG 2 cut(s) 27, 40
FaiI YATR 3 cut(s) 25, 38, 235
FatI CATG 2 cut(s) 23, 36
Fnu4HI GCNGC 2 cut(s) 115, 274
FriOI GRGCYC 2 cut(s) 44, 185
Fsp4HI GCNGC 2 cut(s) 115, 274
GlaI GCGC 2 cut(s) 223, 225
GluI GCNGC 2 cut(s) 115, 274
HaeIII GGCC 5 cut(s) 9, 21, 192, 206, 257
HhaI GCGC 2 cut(s) 224, 226
Hin1II CATG 2 cut(s) 27, 40
Hin6I GCGC 2 cut(s) 222, 224
HinP1I GCGC 2 cut(s) 222, 224
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 2 cut(s) 102, 150
Hpy188I TCNGA 1 cut(s) 244
Hpy8I GTNNAC 2 cut(s) 102, 150
HpyAV CCTTC 2 cut(s) 132, 203
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 3 cut(s) 189, 230, 254
HpyF3I CTNAG 1 cut(s) 166
HpySE526I ACGT 1 cut(s) 239
Hsp92II CATG 2 cut(s) 27, 40
HspAI GCGC 2 cut(s) 222, 224
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 8 cut(s) 110, 131, 158, 172, 188, 239, 264, 276
Lsp1109I GCAGC 2 cut(s) 126, 285
MaeII ACGT 1 cut(s) 239
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 1 cut(s) 188
MhlI GDGCHC 2 cut(s) 44, 185
MluCI AATT 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 7 cut(s) 76, 82, 104, 175, 220, 238, 278
Mph1103I ATGCAT 1 cut(s) 235
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 3 cut(s) 189, 230, 254
NcoI CCATGG 1 cut(s) 23
NdeII GATC 1 cut(s) 15
NlaIII CATG 2 cut(s) 27, 40
NmeAIII GCCGAG 1 cut(s) 249
NsiI ATGCAT 1 cut(s) 235
PauI GCGCGC 1 cut(s) 222
PkrI GCNGC 2 cut(s) 116, 275
Ple19I CGATCG 1 cut(s) 18
PspPI GGNCC 2 cut(s) 20, 190
PstNI CAGNNNCTG 1 cut(s) 173
PteI GCGCGC 1 cut(s) 222
PvuI CGATCG 1 cut(s) 18
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SatI GCNGC 2 cut(s) 115, 274
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 2 cut(s) 20, 190
SduI GDGCHC 2 cut(s) 44, 185
SetI ASST 5 cut(s) 68, 164, 212, 242, 278
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 1 cut(s) 46
StyI CCWWGG 2 cut(s) 23, 177
TaiI ACGT 1 cut(s) 242
TaqI TCGA 1 cut(s) 14
TasI AATT 1 cut(s) 46
TatI WGTACW 1 cut(s) 129
TscAI CASTG 2 cut(s) 178, 255
TseI GCWGC 2 cut(s) 114, 273
TspRI CASTG 2 cut(s) 178, 255
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.