Prupe.6G311500_v2.0.a1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0029001
Physical Location & Seq
Forward (+)
27906219 .. 27908449
2231 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G311500.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 1581 bp
ATGGAACGTCAAAAGCGCAAGTTCGTGACTGCTGCAAGTTGTGAAGGTGAAGGAGGCCGCAGAAGGAGAATGACAGACAGATTTAGCAATCTTCCTGACCAAATCGCCCACGTCATTCTTTCGTTCCTTAGCATGGCTGACCTTTCTCGACTCAGTTATGTGTCCAAATGTTGGAGAGAACTTTGTCTTTCATCTCCGGTTTTCAATTTCAGTGAATATAACTGCATAGGGAATGCCGACTTGTGTGATAGCAAGCTGAGGTTGTTGAATATTCTGGAAAGGTTCCTTTTGCTTCGTGCGGATCATAAGATACAGCGCTTCCGTTTTGATTGGCATCTTCCCCCTCCAAAGAAGAACCAAAGCTCATCATCATCATCATGCGGCTGTCGTGATGTCTACTGTCGTGTGATGTCGTGCGTCCAGAAGGTGGTGAGATGTAACGTTGAACAGCTTGAGCTTAATCTCCTTGGACTAGGTGAACCCAATCTGAATTTTCCGTCTTCCATCTTTCTTTGTGAATCTTTGAAGTCTCTGTCGGTCTGCACAAACCGTGCAATTCTTAGAGCCCCCTCCTCCTCCTCATCTTTTTCCTCTAATCTCAAAGACTTGCAGTTGTTGAATGTTGTTATAGCAGATGATGAGGGGTTTTTCAAATGGATCTCATGTTCTTGCAAATGCATCCGGAAATTAGGTCTTGACCATACTTGTATGATTAAAAATCTCAATATTGAAAGCTCTTCTTTGGAGAGGTTAAGTCTTTCTTATCCCCAACCTGATCTTGACACACTTAACATCTCCTGTGAAAATCTTCAACTGTTAAGTATCTCCTTATGTCCTGATTCACCCAGCATGACATCATTGAATATTTTTGCACCAAATCTTAAACAGTTGTGGTGGGAAGGGAATTTGATGAATCATCCAAATCTCAGAAAGTTTCAAAGTTTAGAATCTGCTGAGGTTTGTTTTGATTCCGTAGGCAAAGTTTCTCTTGAAAAAACTCAAAAGTTCAAAAGTACTTCGATAAAATTGAAGACTAGAGTAGATGACTTTGAACCCTTATCTGAAGTCTTTCACGGTTTAAGAATCAATGAAGTTCTTATTCTAAATGAAGCGGCCATTAAGGTTATGTTCAAGCTGGAAGGGTCCATGCCAGTTTCATTCAACAATGTTCGAAGTTTGCGTATGAATATTGGGTGCGTAATTGACGAGATAGTCCCTTCAATGGTCTCTGTTCTTAGAGGAATGCCTTACTTGCGTACCTTATACATAAAGCGTTGCCCACCTTTTCATGAACTTGAATCTAATAAATGCGGGTTTGATATAGGATACTGGAAACTGCAAAACCTTGGATTTATTAATCGACTTGAATTCTTCACCATGGAGATTTTAGACGGGTACAATGTAGTTGAATTAGCATGGTACGTACTCGAGTGTGCACAGAAATTGAAGAAAGGTGTCATAATTTGTTCAGCTCAAAATTTGGAGGAAGTTAAGCGGAAATTAAAGAAATGCAAGATGATTTCCAAGGCTGCAATTGTCTTTAAGGAAAGACCAAAAAGTGAACGAAGACTGCTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

527

Amino Acids

60.16

Weight (kDa)

8.97

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029001)

Species Orthologous Gene IDs
prunus_persica Prupe.6G311500_v2.0.a1 Prupe.6G311700_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1211
AccB7I CCANNNNNTGG 2 cut(s) 171, 427
AccI GTMKAC 1 cut(s) 396
AccIII TCCGGA 1 cut(s) 681
AciI CCGC 6 cut(s) 58, 299, 381, 1112, 1311, 1495
AclI AACGTT 1 cut(s) 441
AclWI GGATC 2 cut(s) 309, 665
AcoI YGGCCR 1 cut(s) 1113
AcsI RAATTY 4 cut(s) 490, 904, 1367, 1477
AcuI CTGAAG 1 cut(s) 1083
AfaI GTAC 5 cut(s) 1015, 1258, 1397, 1421, 1425
AfeI AGCGCT 1 cut(s) 317
AfiI CCNNNNNNNGG 4 cut(s) 133, 171, 427, 1222
AjiI CACGTC 1 cut(s) 112
AloI GAACNNNNNNTCC 2 cut(s) 649, 681
AluBI AGCT 7 cut(s) 256, 363, 451, 457, 735, 1135, 1472
AluI AGCT 7 cut(s) 256, 363, 451, 457, 735, 1135, 1472
Alw21I GWGCWC 1 cut(s) 1438
Alw26I GTCTC 2 cut(s) 534, 1231
Alw44I GTGCAC 1 cut(s) 1434
AlwI GGATC 2 cut(s) 309, 665
Ama87I CYCGRG 1 cut(s) 1427
Aor13HI TCCGGA 1 cut(s) 681
Aor51HI AGCGCT 1 cut(s) 317
AoxI GGCC 2 cut(s) 55, 1113
ApaLI GTGCAC 1 cut(s) 1434
ApeKI GCWGC 2 cut(s) 32, 1529
ApoI RAATTY 4 cut(s) 490, 904, 1367, 1477
AseI ATTAAT 1 cut(s) 1356
Asp700I GAANNNNTTC 2 cut(s) 807, 1068
AspLEI GCGC 2 cut(s) 18, 318
AspS9I GGNCC 1 cut(s) 1143
AsuHPI GGTGA 5 cut(s) 59, 442, 488, 834, 1366
AsuII TTCGAA 1 cut(s) 1171
AvaI CYCGRG 1 cut(s) 1427
AvaII GGWCC 1 cut(s) 1143
BaeGI GKGCMC 1 cut(s) 1438
BaeI ACNNNNGTAYC 2 cut(s) 1240, 1273
BanII GRGCYC 1 cut(s) 568
BbsI GAAGAC 3 cut(s) 492, 1037, 1573
Bbv12I GWGCWC 1 cut(s) 1438
BbvCI CCTCAGC 2 cut(s) 257, 954
BbvI GCAGC 2 cut(s) 19, 1516
BccI CCATC 1 cut(s) 512
BciVI GTATCC 1 cut(s) 1319
BcoDI GTCTC 2 cut(s) 534, 1231
BfaI CTAG 2 cut(s) 473, 1035
BfoI RGCGCY 1 cut(s) 319
BfuI GTATCC 1 cut(s) 1319
BisI GCNGC 5 cut(s) 33, 58, 382, 1113, 1530
BlsI GCNGC 5 cut(s) 34, 59, 383, 1114, 1531
BmcAI AGTACT 1 cut(s) 1015
Bme18I GGWCC 1 cut(s) 1143
BmeT110I CYCGRG 1 cut(s) 1427
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 1143
BmiI GGNNCC 2 cut(s) 284, 1144
BmsI GCATC 2 cut(s) 343, 687
BpiI GAAGAC 3 cut(s) 492, 1037, 1573
Bpu10I CCTNAGC 3 cut(s) 128, 257, 954
Bpu14I TTCGAA 1 cut(s) 1171
BpuEI CTTGAG 1 cut(s) 473
BsaAI YACGTR 1 cut(s) 1423
BsaBI GATNNNNATC 1 cut(s) 333
BsaI GGTCTC 1 cut(s) 1231
BsaJI CCNNGG 4 cut(s) 466, 1345, 1377, 1524
BsaWI WCCGGW 2 cut(s) 196, 681
Bsc4I CCNNNNNNNGG 4 cut(s) 133, 171, 427, 1222
Bse1I ACTGG 2 cut(s) 1151, 1334
Bse8I GATNNNNATC 1 cut(s) 333
BseAI TCCGGA 1 cut(s) 681
BseDI CCNNGG 4 cut(s) 466, 1345, 1377, 1524
BseGI GGATG 2 cut(s) 678, 916
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 4 cut(s) 133, 171, 427, 1222
BseMII CTCAG 4 cut(s) 166, 248, 940, 945
BseNI ACTGG 2 cut(s) 1151, 1334
BseRI GAGGAG 3 cut(s) 562, 565, 568
BseSI GKGCMC 1 cut(s) 1438
BseXI GCAGC 2 cut(s) 19, 1516
BseYI CCCAGC 1 cut(s) 845
BsgI GTGCAG 1 cut(s) 526
BshFI GGCC 2 cut(s) 57, 1115
BsiHKAI GWGCWC 1 cut(s) 1438
BsiHKCI CYCGRG 1 cut(s) 1427
BsiSI CCGG 2 cut(s) 197, 682
BslFI GGGAC 1 cut(s) 1199
BslI CCNNNNNNNGG 4 cut(s) 133, 171, 427, 1222
BsmAI GTCTC 2 cut(s) 534, 1231
BsmFI GGGAC 1 cut(s) 1199
BsmI GAATGC 2 cut(s) 238, 1248
BsnI GGCC 2 cut(s) 57, 1115
Bso31I GGTCTC 1 cut(s) 1231
BsoBI CYCGRG 1 cut(s) 1427
Bsp119I TTCGAA 1 cut(s) 1171
Bsp1286I GDGCHC 2 cut(s) 568, 1438
Bsp13I TCCGGA 1 cut(s) 681
Bsp143I GATC 3 cut(s) 301, 657, 775
Bsp19I CCATGG 1 cut(s) 1377
BspACI CCGC 6 cut(s) 58, 299, 381, 1112, 1311, 1495
BspANI GGCC 2 cut(s) 57, 1115
BspCNI CTCAG 4 cut(s) 165, 249, 939, 946
BspEI TCCGGA 1 cut(s) 681
BspHI TCATGA 1 cut(s) 1288
BspLI GGNNCC 2 cut(s) 284, 1144
BspPI GGATC 2 cut(s) 309, 665
BspQI GCTCTTC 1 cut(s) 742
BspT104I TTCGAA 1 cut(s) 1171
BspTNI GGTCTC 1 cut(s) 1231
BsrI ACTGG 2 cut(s) 1151, 1334
BssECI CCNNGG 4 cut(s) 466, 1345, 1377, 1524
BssMI GATC 3 cut(s) 301, 657, 775
BssT1I CCWWGG 4 cut(s) 466, 1345, 1377, 1524
Bst4CI ACNGT 5 cut(s) 401, 551, 816, 888, 1076
Bst6I CTCTTC 1 cut(s) 742
BstBAI YACGTR 1 cut(s) 1423
BstBI TTCGAA 1 cut(s) 1171
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 7 cut(s) 128, 152, 257, 560, 926, 954, 1235
BstDSI CCRYGG 1 cut(s) 1377
BstF5I GGATG 2 cut(s) 678, 916
BstH2I RGCGCY 1 cut(s) 319
BstHHI GCGC 2 cut(s) 18, 318
BstKTI GATC 3 cut(s) 304, 660, 778
BstMAI GTCTC 2 cut(s) 534, 1231
BstMBI GATC 3 cut(s) 301, 657, 775
BstMWI GCNNNNNNNGC 1 cut(s) 1252
BstSLI GKGCMC 1 cut(s) 1438
BstSNI TACGTA 1 cut(s) 1423
BstV1I GCAGC 2 cut(s) 19, 1516
BstV2I GAAGAC 3 cut(s) 492, 1037, 1573
BstX2I RGATCY 1 cut(s) 657
BstYI RGATCY 1 cut(s) 657
BsuI GTATCC 1 cut(s) 1319
BsuRI GGCC 2 cut(s) 57, 1115
BtgI CCRYGG 1 cut(s) 1377
BtrI CACGTC 1 cut(s) 112
BtsCI GGATG 2 cut(s) 678, 916
BtsIMutI CAGTG 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 254
CciI TCATGA 1 cut(s) 1288
CfoI GCGC 2 cut(s) 18, 318
Cfr13I GGNCC 1 cut(s) 1143
CseI GACGC 1 cut(s) 406
Csp6I GTAC 5 cut(s) 1014, 1257, 1396, 1420, 1424
CviAII CATG 8 cut(s) 133, 378, 663, 850, 1147, 1289, 1378, 1416
CviQI GTAC 5 cut(s) 1014, 1257, 1396, 1420, 1424
DdeI CTNAG 7 cut(s) 128, 152, 257, 560, 926, 954, 1235
DpnI GATC 3 cut(s) 303, 659, 777
DpnII GATC 3 cut(s) 301, 657, 775
DrdI GACNNNNNNGTC 1 cut(s) 1211
DseDI GACNNNNNNGTC 1 cut(s) 1211
EaeI YGGCCR 1 cut(s) 1113
Eam1104I CTCTTC 1 cut(s) 742
EarI CTCTTC 1 cut(s) 742
Eco105I TACGTA 1 cut(s) 1423
Eco130I CCWWGG 4 cut(s) 466, 1345, 1377, 1524
Eco24I GRGCYC 1 cut(s) 568
Eco31I GGTCTC 1 cut(s) 1231
Eco47I GGWCC 1 cut(s) 1143
Eco47III AGCGCT 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 1083
Eco88I CYCGRG 1 cut(s) 1427
EcoRI GAATTC 1 cut(s) 1367
EcoT14I CCWWGG 4 cut(s) 466, 1345, 1377, 1524
EcoT22I ATGCAT 1 cut(s) 680
EcoT38I GRGCYC 1 cut(s) 568
ErhI CCWWGG 4 cut(s) 466, 1345, 1377, 1524
FaeI CATG 8 cut(s) 136, 381, 666, 853, 1150, 1292, 1381, 1419
FalI AAGNNNNNCTT 6 cut(s) 724, 756, 745, 777, 972, 1004
FaqI GGGAC 1 cut(s) 1199
FatI CATG 8 cut(s) 132, 377, 662, 849, 1146, 1288, 1377, 1415
FauI CCCGC 1 cut(s) 1304
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 5 cut(s) 33, 58, 382, 1113, 1530
FokI GGATG 2 cut(s) 665, 903
FriOI GRGCYC 1 cut(s) 568
Fsp4HI GCNGC 5 cut(s) 33, 58, 382, 1113, 1530
FspBI CTAG 2 cut(s) 473, 1035
GlaI GCGC 2 cut(s) 17, 317
GluI GCNGC 5 cut(s) 33, 58, 382, 1113, 1530
GsaI CCCAGC 1 cut(s) 849
HaeII RGCGCY 1 cut(s) 319
HaeIII GGCC 2 cut(s) 57, 1115
HapII CCGG 2 cut(s) 197, 682
HgaI GACGC 1 cut(s) 406
HhaI GCGC 2 cut(s) 18, 318
Hin1II CATG 8 cut(s) 136, 381, 666, 853, 1150, 1292, 1381, 1419
Hin6I GCGC 2 cut(s) 16, 316
HinP1I GCGC 2 cut(s) 16, 316
HinfI GANTC 8 cut(s) 150, 518, 839, 913, 947, 968, 1083, 1298
HpaII CCGG 2 cut(s) 197, 682
HphI GGTGA 5 cut(s) 59, 442, 488, 834, 1366
Hpy166II GTNNAC 4 cut(s) 397, 479, 1436, 1562
Hpy188I TCNGA 3 cut(s) 489, 929, 1063
Hpy8I GTNNAC 4 cut(s) 397, 479, 1436, 1562
HpyAV CCTTC 7 cut(s) 38, 44, 57, 418, 893, 1133, 1227
HpyCH4III ACNGT 5 cut(s) 401, 551, 816, 888, 1076
HpyCH4IV ACGT 4 cut(s) 7, 111, 441, 1422
HpyF10VI GCNNNNNNNGC 1 cut(s) 1252
HpyF3I CTNAG 7 cut(s) 128, 152, 257, 560, 926, 954, 1235
HpySE526I ACGT 4 cut(s) 7, 111, 441, 1422
Hsp92II CATG 8 cut(s) 136, 381, 666, 853, 1150, 1292, 1381, 1419
HspAI GCGC 2 cut(s) 16, 316
Kpn2I TCCGGA 1 cut(s) 681
Kzo9I GATC 3 cut(s) 301, 657, 775
LguI GCTCTTC 1 cut(s) 742
Lsp1109I GCAGC 2 cut(s) 19, 1516
LweI GCATC 2 cut(s) 343, 687
MaeI CTAG 2 cut(s) 473, 1035
MaeII ACGT 4 cut(s) 7, 111, 441, 1422
MaeIII GTNAC 2 cut(s) 25, 437
MalI GATC 3 cut(s) 303, 659, 777
MboI GATC 3 cut(s) 301, 657, 775
MfeI CAATTG 1 cut(s) 1533
MflI RGATCY 1 cut(s) 657
MhlI GDGCHC 2 cut(s) 568, 1438
MlyI GAGTC 1 cut(s) 144
MmeI TCCRAC 1 cut(s) 152
Mph1103I ATGCAT 1 cut(s) 680
MroI TCCGGA 1 cut(s) 681
MroXI GAANNNNTTC 2 cut(s) 807, 1068
MslI CAYNNNNRTG 1 cut(s) 376
MspI CCGG 2 cut(s) 197, 682
MunI CAATTG 1 cut(s) 1533
Mva1269I GAATGC 2 cut(s) 238, 1248
MwoI GCNNNNNNNGC 1 cut(s) 1252
NcoI CCATGG 1 cut(s) 1377
NdeII GATC 3 cut(s) 301, 657, 775
NlaIII CATG 8 cut(s) 136, 381, 666, 853, 1150, 1292, 1381, 1419
NlaIV GGNNCC 2 cut(s) 284, 1144
NmuCI GTSAC 1 cut(s) 25
NsiI ATGCAT 1 cut(s) 680
NspV TTCGAA 1 cut(s) 1171
PaeR7I CTCGAG 1 cut(s) 1427
PagI TCATGA 1 cut(s) 1288
PciSI GCTCTTC 1 cut(s) 742
PcsI WCGNNNNNNNCGW 1 cut(s) 1177
PctI GAATGC 2 cut(s) 238, 1248
PdmI GAANNNNTTC 2 cut(s) 807, 1068
PfeI GAWTC 7 cut(s) 518, 839, 913, 947, 968, 1083, 1298
PflMI CCANNNNNTGG 2 cut(s) 171, 427
PkrI GCNGC 5 cut(s) 34, 59, 383, 1114, 1531
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
Ppu21I YACGTR 1 cut(s) 1423
PshBI ATTAAT 1 cut(s) 1356
Psp1406I AACGTT 1 cut(s) 441
PspFI CCCAGC 1 cut(s) 845
PspN4I GGNNCC 2 cut(s) 284, 1144
PspPI GGNCC 1 cut(s) 1143
PspXI VCTCGAGB 1 cut(s) 1427
PsuI RGATCY 1 cut(s) 657
RsaI GTAC 5 cut(s) 1015, 1258, 1397, 1421, 1425
RsaNI GTAC 5 cut(s) 1014, 1257, 1396, 1420, 1424
RseI CAYNNNNRTG 1 cut(s) 376
SapI GCTCTTC 1 cut(s) 742
SatI GCNGC 5 cut(s) 33, 58, 382, 1113, 1530
Sau3AI GATC 3 cut(s) 301, 657, 775
Sau96I GGNCC 1 cut(s) 1143
ScaI AGTACT 1 cut(s) 1015
SchI GAGTC 1 cut(s) 144
SduI GDGCHC 2 cut(s) 568, 1438
SfaNI GCATC 2 cut(s) 343, 687
Sfr274I CTCGAG 1 cut(s) 1427
SfuI TTCGAA 1 cut(s) 1171
SinI GGWCC 1 cut(s) 1143
SlaI CTCGAG 1 cut(s) 1427
SmiMI CAYNNNNRTG 1 cut(s) 376
SmlI CTYRAG 2 cut(s) 452, 1427
SmoI CTYRAG 2 cut(s) 452, 1427
SnaBI TACGTA 1 cut(s) 1423
SsiI CCGC 6 cut(s) 58, 299, 381, 1112, 1311, 1495
SspI AATATT 4 cut(s) 271, 727, 865, 1189
SspMI CTAG 2 cut(s) 473, 1035
StyI CCWWGG 4 cut(s) 466, 1345, 1377, 1524
TaaI ACNGT 5 cut(s) 401, 551, 816, 888, 1076
TaiI ACGT 4 cut(s) 10, 114, 444, 1425
TaqI TCGA 5 cut(s) 148, 1019, 1171, 1360, 1428
TaqII GACCGA 1 cut(s) 526
TatI WGTACW 1 cut(s) 1013
TauI GCSGC 3 cut(s) 60, 384, 1115
TfiI GAWTC 7 cut(s) 518, 839, 913, 947, 968, 1083, 1298
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 2 cut(s) 32, 1529
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 8 cut(s) 180, 926, 1104, 1122, 1146, 1199, 1277, 1305
TspGWI ACGGA 3 cut(s) 311, 486, 961
TspRI CASTG 1 cut(s) 217
Van91I CCANNNNNTGG 2 cut(s) 171, 427
VneI GTGCAC 1 cut(s) 1434
VpaK11BI GGWCC 1 cut(s) 1143
VspI ATTAAT 1 cut(s) 1356
XapI RAATTY 4 cut(s) 490, 904, 1367, 1477
XhoI CTCGAG 1 cut(s) 1427
XmiI GTMKAC 1 cut(s) 396
XmnI GAANNNNTTC 2 cut(s) 807, 1068
XspI CTAG 2 cut(s) 473, 1035
ZrmI AGTACT 1 cut(s) 1015
Zsp2I ATGCAT 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.