Prupe.6G311700_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0029001
Physical Location & Seq
Forward (+)
27926339 .. 27927454
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G311700.1

Sequence Viewer

Length: 1032 bp
ATGGAACGTCAAAAGCACAATTTAGTGGCTACTGCAAGATGTGAAGGCGAAGGACCTTGCATAGGGAGACTGATAGAGAGACTCAGCCATCTTCCTGACCACATCGCCCATCGCATTGTTTCGTTCCTTTCTATGCATGACCTTGCTCGACTGAGTTATGTGTCTAAATGTTGCAGAGAACTTTGTCTTTCATCTCCGTTTCTGAATTTCAGTAAAGATGACTGCGTGGAGGCTGCCGACGCGTGTGGCAGGAAGCAGAGGTTGTTGAATTCTCTGGAAAGCTCATCATCATCATCTTCACCATGCGTCTGTCCTGATGTCTACGTTCGTGTAATTTCGTGGGTAGACAAGGCGGTGAGGTGTTACCTTGAAGAGCTTAAGCTTAATCTCCATCATATAGGTGAACCCAATCTGATTTTTCCTTCTTTTCTCTTTCTTTGTGGATCTTTGAAGTCTCTATGCGTACGCATGAAAGGTATTCTTAAAACACCCTCGTCGATCTCTAATCTCAAATACTTGGAGTTGTTGCATGTTGTTATAGAAGATGATGAGGGGTTTTTCAAATGGATCTCATGTTCTTGCAAATGCATCCAGATTTTACGTCTTGCATATCCTCGTGGGATAAAAAATCTTAACATCGAAAGCTCGTCTTTGGAGATTTTTAATCTTTATCAGCCCCGTCATGGTCTTGACACATATCACATCTCTTGTGAAAATCTTCAACAGTTAAGTATCTCCTTGAGAACGGATTCATCTAGCATCACATCATTGAATATTTTTGCTCCAAATCTTAAAACGTTGTGCTGGACCGGGAATTTGACGATTCACCCAAATCTTGGAAAGTTTCCAAGTTTAGAATATGCCATGATTAAATTTGATTCCGTAGGCACAGTTTATCTCGGAAAAACTCTAAATTTCAAATATACTTCGATAATTCTGGGGCCTAGAGCTGGAGTAGATGACTTTGACCCTTTATGTGAAGTCTTTCGCAGTTACGCTCTCACTCTAAAGGAATCTGTCATTAAGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

344

Amino Acids

38.64

Weight (kDa)

8.23

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029001)

Species Orthologous Gene IDs
prunus_persica Prupe.6G311500_v2.0.a1 Prupe.6G311700_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 836
AccI GTMKAC 2 cut(s) 321, 345
AccII CGCG 1 cut(s) 242
AciI CCGC 1 cut(s) 353
AclI AACGTT 1 cut(s) 797
AclWI GGATC 2 cut(s) 451, 575
AcsI RAATTY 5 cut(s) 205, 268, 814, 872, 913
AfaI GTAC 1 cut(s) 465
AfiI CCNNNNNNNGG 4 cut(s) 62, 683, 836, 950
AflII CTTAAG 1 cut(s) 377
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 7 cut(s) 268, 371, 451, 562, 722, 772, 919
AloI GAACNNNNNNTCC 2 cut(s) 559, 591
AluBI AGCT 5 cut(s) 282, 376, 382, 645, 950
AluI AGCT 5 cut(s) 282, 376, 382, 645, 950
Alw26I GTCTC 3 cut(s) 61, 73, 459
AlwI GGATC 2 cut(s) 451, 575
AoxI GGCC 1 cut(s) 941
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 5 cut(s) 205, 268, 814, 872, 913
ArsI GACNNNNNNTTYG 2 cut(s) 799, 831
Asp700I GAANNNNTTC 3 cut(s) 717, 748, 984
AspS9I GGNCC 3 cut(s) 53, 807, 941
AsuC2I CCSGG 1 cut(s) 811
AsuHPI GGTGA 4 cut(s) 291, 367, 413, 818
AvaII GGWCC 2 cut(s) 53, 807
BauI CACGAG 1 cut(s) 615
BbvI GCAGC 1 cut(s) 220
BccI CCATC 3 cut(s) 96, 117, 399
BcnI CCSGG 1 cut(s) 811
BcoDI GTCTC 3 cut(s) 61, 73, 459
BfaI CTAG 2 cut(s) 756, 945
BfrI CTTAAG 1 cut(s) 377
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 811
Bme18I GGWCC 2 cut(s) 53, 807
BmgT120I GGNCC 3 cut(s) 53, 807, 941
BmiI GGNNCC 1 cut(s) 942
BmrFI CCNGG 1 cut(s) 811
BmsI GCATC 2 cut(s) 597, 768
BpmI CTGGAG 1 cut(s) 972
BpuEI CTTGAG 1 cut(s) 760
BpuMI CCSGG 1 cut(s) 811
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 683, 836, 950
BseGI GGATG 1 cut(s) 588
BseLI CCNNNNNNNGG 4 cut(s) 62, 683, 836, 950
BseMII CTCAG 2 cut(s) 97, 143
BseXI GCAGC 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 242
BshFI GGCC 1 cut(s) 943
BsiSI CCGG 1 cut(s) 810
BsiWI CGTACG 1 cut(s) 463
BslI CCNNNNNNNGG 4 cut(s) 62, 683, 836, 950
BsmAI GTCTC 3 cut(s) 61, 73, 459
BsnI GGCC 1 cut(s) 943
Bsp143I GATC 3 cut(s) 443, 498, 567
BspACI CCGC 1 cut(s) 353
BspANI GGCC 1 cut(s) 943
BspCNI CTCAG 2 cut(s) 96, 144
BspFNI CGCG 1 cut(s) 242
BspLI GGNNCC 1 cut(s) 942
BspPI GGATC 2 cut(s) 451, 575
BspQI GCTCTTC 1 cut(s) 366
BspTI CTTAAG 1 cut(s) 377
BssMI GATC 3 cut(s) 443, 498, 567
BssSI CACGAG 1 cut(s) 615
Bst2BI CACGAG 1 cut(s) 615
Bst4CI ACNGT 2 cut(s) 726, 892
Bst6I CTCTTC 1 cut(s) 366
BstAFI CTTAAG 1 cut(s) 377
BstDEI CTNAG 2 cut(s) 83, 152
BstENI CCTNNNNNAGG 1 cut(s) 60
BstF5I GGATG 1 cut(s) 588
BstFNI CGCG 1 cut(s) 242
BstKTI GATC 3 cut(s) 446, 501, 570
BstMAI GTCTC 3 cut(s) 61, 73, 459
BstMBI GATC 3 cut(s) 443, 498, 567
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 533
BstSCI CCNGG 1 cut(s) 809
BstUI CGCG 1 cut(s) 242
BstV1I GCAGC 1 cut(s) 220
BstX2I RGATCY 2 cut(s) 443, 567
BstYI RGATCY 2 cut(s) 443, 567
BsuRI GGCC 1 cut(s) 943
BtgZI GCGATG 2 cut(s) 88, 95
BtsCI GGATG 1 cut(s) 588
Cfr13I GGNCC 3 cut(s) 53, 807, 941
CseI GACGC 2 cut(s) 248, 295
Csp6I GTAC 1 cut(s) 464
CviAII CATG 7 cut(s) 137, 303, 469, 530, 573, 683, 865
CviQI GTAC 1 cut(s) 464
DdeI CTNAG 2 cut(s) 83, 152
DpnI GATC 3 cut(s) 445, 500, 569
DpnII GATC 3 cut(s) 443, 498, 567
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco47I GGWCC 2 cut(s) 53, 807
EcoNI CCTNNNNNAGG 1 cut(s) 60
EcoO109I RGGNCCY 2 cut(s) 53, 941
EcoRI GAATTC 1 cut(s) 268
EcoT22I ATGCAT 2 cut(s) 138, 590
FaeI CATG 7 cut(s) 140, 306, 472, 533, 576, 686, 868
FalI AAGNNNNNCTT 4 cut(s) 465, 497, 634, 666
FatI CATG 7 cut(s) 136, 302, 468, 529, 572, 682, 864
FblI GTMKAC 2 cut(s) 321, 345
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 1 cut(s) 575
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 2 cut(s) 756, 945
GluI GCNGC 1 cut(s) 234
GsuI CTGGAG 1 cut(s) 972
HaeIII GGCC 1 cut(s) 943
HapII CCGG 1 cut(s) 810
HgaI GACGC 2 cut(s) 248, 295
Hin1II CATG 7 cut(s) 140, 306, 472, 533, 576, 686, 868
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 5 cut(s) 81, 749, 823, 878, 1013
HpaII CCGG 1 cut(s) 810
HphI GGTGA 4 cut(s) 291, 367, 413, 818
Hpy166II GTNNAC 3 cut(s) 322, 346, 404
Hpy188I TCNGA 3 cut(s) 204, 414, 902
Hpy188III TCNNGA 5 cut(s) 95, 275, 314, 592, 689
Hpy8I GTNNAC 3 cut(s) 322, 346, 404
Hpy99I CGWCG 2 cut(s) 242, 499
HpyAV CCTTC 3 cut(s) 38, 44, 432
HpyCH4III ACNGT 2 cut(s) 726, 892
HpyCH4IV ACGT 4 cut(s) 7, 324, 601, 797
HpyCH4V TGCA 8 cut(s) 35, 60, 136, 174, 529, 582, 588, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 2 cut(s) 83, 152
HpySE526I ACGT 4 cut(s) 7, 324, 601, 797
Hsp92II CATG 7 cut(s) 140, 306, 472, 533, 576, 686, 868
Kzo9I GATC 3 cut(s) 443, 498, 567
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 1 cut(s) 787
LpnPI CCDG 9 cut(s) 108, 235, 260, 327, 605, 790, 823, 923, 936
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 2 cut(s) 597, 768
MaeI CTAG 2 cut(s) 756, 945
MaeII ACGT 4 cut(s) 7, 324, 601, 797
MaeIII GTNAC 2 cut(s) 362, 992
MalI GATC 3 cut(s) 445, 500, 569
MboI GATC 3 cut(s) 443, 498, 567
MboII GAAGA 5 cut(s) 83, 288, 383, 554, 710
MflI RGATCY 2 cut(s) 443, 567
MluCI AATT 8 cut(s) 19, 205, 268, 333, 814, 872, 913, 933
MluI ACGCGT 1 cut(s) 240
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 6 cut(s) 223, 252, 351, 502, 544, 624
Mph1103I ATGCAT 2 cut(s) 138, 590
MroXI GAANNNNTTC 3 cut(s) 717, 748, 984
MseI TTAA 9 cut(s) 378, 384, 483, 633, 663, 728, 792, 870, 1023
MslI CAYNNNNRTG 1 cut(s) 399
MspCI CTTAAG 1 cut(s) 377
MspI CCGG 1 cut(s) 810
MspR9I CCNGG 1 cut(s) 811
MvnI CGCG 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 239
NciI CCSGG 1 cut(s) 811
NdeII GATC 3 cut(s) 443, 498, 567
NlaIII CATG 7 cut(s) 140, 306, 472, 533, 576, 686, 868
NlaIV GGNNCC 1 cut(s) 942
NsiI ATGCAT 2 cut(s) 138, 590
NspI RCATGY 1 cut(s) 533
PciSI GCTCTTC 1 cut(s) 366
PdmI GAANNNNTTC 3 cut(s) 717, 748, 984
PfeI GAWTC 4 cut(s) 749, 823, 878, 1013
Pfl23II CGTACG 1 cut(s) 463
PflMI CCANNNNNTGG 1 cut(s) 836
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
PpuMI RGGWCCY 1 cut(s) 53
Psp1406I AACGTT 1 cut(s) 797
Psp5II RGGWCCY 1 cut(s) 53
PspLI CGTACG 1 cut(s) 463
PspN4I GGNNCC 1 cut(s) 942
PspPI GGNCC 3 cut(s) 53, 807, 941
PspPPI RGGWCCY 1 cut(s) 53
PsuI RGATCY 2 cut(s) 443, 567
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
RseI CAYNNNNRTG 1 cut(s) 399
SapI GCTCTTC 1 cut(s) 366
SaqAI TTAA 9 cut(s) 378, 384, 483, 633, 663, 728, 792, 870, 1023
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 3 cut(s) 443, 498, 567
Sau96I GGNCC 3 cut(s) 53, 807, 941
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 811
SfaNI GCATC 2 cut(s) 597, 768
SinI GGWCC 2 cut(s) 53, 807
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 2 cut(s) 377, 739
SmoI CTYRAG 2 cut(s) 377, 739
Sse9I AATT 8 cut(s) 19, 205, 268, 333, 814, 872, 913, 933
SsiI CCGC 1 cut(s) 353
SspI AATATT 1 cut(s) 775
SspMI CTAG 2 cut(s) 756, 945
StyD4I CCNGG 1 cut(s) 809
TaaI ACNGT 2 cut(s) 726, 892
TaiI ACGT 4 cut(s) 10, 327, 604, 800
TaqI TCGA 4 cut(s) 148, 497, 639, 929
TasI AATT 8 cut(s) 19, 205, 268, 333, 814, 872, 913, 933
TfiI GAWTC 4 cut(s) 749, 823, 878, 1013
Tru1I TTAA 9 cut(s) 378, 384, 483, 633, 663, 728, 792, 870, 1023
Tru9I TTAA 9 cut(s) 378, 384, 483, 633, 663, 728, 792, 870, 1023
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 3 cut(s) 180, 485, 741
TspGWI ACGGA 3 cut(s) 186, 761, 871
Van91I CCANNNNNTGG 1 cut(s) 836
Vha464I CTTAAG 1 cut(s) 377
VpaK11BI GGWCC 2 cut(s) 53, 807
XagI CCTNNNNNAGG 1 cut(s) 60
XapI RAATTY 5 cut(s) 205, 268, 814, 872, 913
XceI RCATGY 1 cut(s) 533
XmiI GTMKAC 2 cut(s) 321, 345
XmnI GAANNNNTTC 3 cut(s) 717, 748, 984
XspI CTAG 2 cut(s) 756, 945
Zsp2I ATGCAT 2 cut(s) 138, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.