Prupe.6G338300_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
29324310 .. 29324610
301 bp
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UTR
Exon/CDS
Intron
Prupe.6G338300.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 168 bp
ATGAAACCTTCAAATTCCATAGAATTCAACCAAAATAAAAGGGCTGCGCGAACGCAAGCCCCCATTGCAATAAATTATGACGTAGGCTCTCCCACTTGGGGAGACCTCAAGCTAGCACCCCTCCTAAGTGCAATGGAGGTCACCAACTTAGGCCATGAGTCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

5.97

Weight (kDa)

6.53

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0027880)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g03031
prunus_persica Prupe.6G338300_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 49
AcsI RAATTY 2 cut(s) 13, 23
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 2 cut(s) 12, 28
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 96
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 2 cut(s) 13, 23
AspLEI GCGC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 133
AsuNHI GCTAGC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 96
BfaI CTAG 1 cut(s) 113
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmtI GCTAGC 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse3DI GCAATG 2 cut(s) 63, 138
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMI GCAATG 2 cut(s) 63, 138
BseXI GCAGC 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 49
BshFI GGCC 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 96
BsnI GGCC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 96
BspANI GGCC 1 cut(s) 153
BspFNI CGCG 1 cut(s) 49
BspOI GCTAGC 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 96
BsrDI GCAATG 2 cut(s) 63, 138
BstC8I GCNNGC 2 cut(s) 57, 114
BstDEI CTNAG 2 cut(s) 125, 148
BstEII GGTNACC 1 cut(s) 139
BstFNI CGCG 1 cut(s) 49
BstHHI GCGC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstPI GGTNACC 1 cut(s) 139
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 1 cut(s) 153
BsuRI GGCC 1 cut(s) 153
Cac8I GCNNGC 2 cut(s) 57, 114
CfoI GCGC 1 cut(s) 49
CviAII CATG 1 cut(s) 155
CviJI RGCY 5 cut(s) 44, 59, 87, 112, 153
CviKI_1 RGCY 5 cut(s) 44, 59, 87, 112, 153
DdeI CTNAG 2 cut(s) 125, 148
Eco31I GGTCTC 1 cut(s) 96
Eco91I GGTNACC 1 cut(s) 139
EcoO65I GGTNACC 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 23
FaeI CATG 1 cut(s) 158
FaiI YATR 3 cut(s) 20, 78, 156
FatI CATG 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 1 cut(s) 113
GlaI GCGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 153
HhaI GCGC 1 cut(s) 49
Hin1II CATG 1 cut(s) 158
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HinfI GANTC 1 cut(s) 158
HphI GGTGA 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 165
HpyAV CCTTC 1 cut(s) 18
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 68, 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 2 cut(s) 125, 148
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 1 cut(s) 158
HspAI GCGC 1 cut(s) 47
Lsp1109I GCAGC 1 cut(s) 31
MaeI CTAG 1 cut(s) 113
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 139
MboII GAAGA 1 cut(s) 153
MluCI AATT 3 cut(s) 13, 23, 73
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 3 cut(s) 116, 130, 131
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 65
NheI GCTAGC 1 cut(s) 112
NlaIII CATG 1 cut(s) 158
NmuCI GTSAC 1 cut(s) 139
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PspEI GGTNACC 1 cut(s) 139
SatI GCNGC 1 cut(s) 45
SchI GAGTC 1 cut(s) 167
SetI ASST 5 cut(s) 10, 84, 108, 114, 141
SgeI CNNG 5 cut(s) 60, 68, 108, 121, 125
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 3 cut(s) 13, 23, 73
SspMI CTAG 1 cut(s) 113
TaiI ACGT 1 cut(s) 84
TasI AATT 3 cut(s) 13, 23, 73
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 2 cut(s) 13, 23
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.