Prupe.6G340300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0022464
Physical Location & Seq
Reverse (-)
29420529 .. 29422752
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G340300.1

Sequence Viewer

Length: 540 bp
ATGTCTAGGCAGAGTCTTGTAAAAGATGCTTGGATTATAGAAGCTGAAGAGGCTTCAAGTTTGGTGGAAGATTTGGAGGCCAAGACCAAGAACAAGTACCCTGGCCAATTGAGCCTCAGAGAAATTGCTCGATCCAAGCTTCTGGAGCTTGGAGTGAAACTTGATCGCCTCGAATCACTCCTCCACAACCCGCCCTCAAAACCCATCTTAACTAAAGAAGATGTGGATTTTCGTTGGAAAATGCTCTCAGATATCCAGCTAAGGACAAGAACGTTGGCTCTCAGTTTCTTTGTGCTAGAAAGATCAGAAAGTCTTCCTGCCACCAAAGAAGACAACAAAAATGCAAACAGATGTGACCAAGATGAAGTGAAGCTTTCGTTCTCTAAAGATGACCAAGAGCTGCTGAAACCTCTTGTTATTAAACCATCCAATTCTTATATTCCGATGAGCTTGCGTTGGAAGACTTGCTGGGGCATTTCTGTGGTCTTAGGGGTGACTGCATGTCTGTTCATCTTAATTTTCCTATTTGTGCACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.52

Weight (kDa)

7.68

Isoelectric Point (pI)

60.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022464)

Species Orthologous Gene IDs
prunus_persica Prupe.6G340300_v2.0.a1 Prupe.6G340300_v2.0.a1 Prupe.6G340300_v2.0.a1 Prupe.6G340300_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 191
AclI AACGTT 1 cut(s) 272
AclWI GGATC 1 cut(s) 126
AcoI YGGCCR 1 cut(s) 103
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 1 cut(s) 98
AgsI TTSAA 1 cut(s) 57
AhdI GACNNNNNGTC 1 cut(s) 501
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 7 cut(s) 44, 139, 148, 259, 373, 400, 450
AluI AGCT 7 cut(s) 44, 139, 148, 259, 373, 400, 450
Alw21I GWGCWC 1 cut(s) 534
Alw44I GTGCAC 1 cut(s) 530
AlwI GGATC 1 cut(s) 126
AoxI GGCC 2 cut(s) 78, 103
ApaLI GTGCAC 1 cut(s) 530
ApeKI GCWGC 1 cut(s) 400
Asp700I GAANNNNTTC 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 505
BaeGI GKGCMC 1 cut(s) 534
BalI TGGCCA 1 cut(s) 105
BbsI GAAGAC 3 cut(s) 305, 336, 467
Bbv12I GWGCWC 1 cut(s) 534
BbvI GCAGC 1 cut(s) 387
BccI CCATC 2 cut(s) 212, 433
BcgI CGANNNNNNTGC 2 cut(s) 433, 467
BciT130I CCWGG 1 cut(s) 102
BfaI CTAG 2 cut(s) 6, 296
BisI GCNGC 1 cut(s) 401
BlsI GCNGC 1 cut(s) 402
Bme1390I CCNGG 1 cut(s) 102
BmeRI GACNNNNNGTC 1 cut(s) 501
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 16
BpiI GAAGAC 3 cut(s) 305, 336, 467
BpmI CTGGAG 1 cut(s) 164
Bpu10I CCTNAGC 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 425
BseMII CTCAG 3 cut(s) 130, 261, 295
BseRI GAGGAG 1 cut(s) 170
BseSI GKGCMC 1 cut(s) 534
BseXI GCAGC 1 cut(s) 387
BseYI CCCAGC 1 cut(s) 468
BshFI GGCC 2 cut(s) 80, 105
BsiHKAI GWGCWC 1 cut(s) 534
BsnI GGCC 2 cut(s) 80, 105
Bsp1286I GDGCHC 1 cut(s) 534
Bsp143I GATC 3 cut(s) 131, 163, 302
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 80, 105
BspCNI CTCAG 3 cut(s) 129, 260, 294
BspPI GGATC 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 3 cut(s) 131, 163, 302
Bst2UI CCWGG 1 cut(s) 102
Bst6I CTCTTC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 452
BstDEI CTNAG 5 cut(s) 116, 247, 260, 281, 487
BstF5I GGATG 1 cut(s) 425
BstKTI GATC 3 cut(s) 134, 166, 305
BstMBI GATC 3 cut(s) 131, 163, 302
BstMWI GCNNNNNNNGC 3 cut(s) 50, 111, 145
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 504
BstSCI CCNGG 1 cut(s) 100
BstSLI GKGCMC 1 cut(s) 534
BstV1I GCAGC 1 cut(s) 387
BstV2I GAAGAC 3 cut(s) 305, 336, 467
BstXI CCANNNNNNTGG 1 cut(s) 142
BsuRI GGCC 2 cut(s) 80, 105
BtsCI GGATG 1 cut(s) 425
Cac8I GCNNGC 1 cut(s) 452
Csp6I GTAC 1 cut(s) 97
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 1 cut(s) 501
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 5 cut(s) 116, 247, 260, 281, 487
DpnI GATC 3 cut(s) 133, 165, 304
DpnII GATC 3 cut(s) 131, 163, 302
DriI GACNNNNNGTC 1 cut(s) 501
EaeI YGGCCR 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 42
Eam1105I GACNNNNNGTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 42
Eco32I GATATC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 100
EcoRV GATATC 1 cut(s) 253
FaeI CATG 1 cut(s) 504
FaiI YATR 4 cut(s) 38, 438, 502, 538
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FatI CATG 1 cut(s) 500
FauI CCCGC 1 cut(s) 198
Fnu4HI GCNGC 1 cut(s) 401
FokI GGATG 1 cut(s) 412
Fsp4HI GCNGC 1 cut(s) 401
FspBI CTAG 2 cut(s) 6, 296
GluI GCNGC 1 cut(s) 401
GsaI CCCAGC 1 cut(s) 472
GsuI CTGGAG 1 cut(s) 164
HaeIII GGCC 2 cut(s) 80, 105
Hin1II CATG 1 cut(s) 504
HindIII AAGCTT 2 cut(s) 137, 371
HinfI GANTC 2 cut(s) 13, 173
HphI GGTGA 1 cut(s) 505
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 4 cut(s) 119, 250, 307, 444
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 532
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 3 cut(s) 344, 500, 532
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 111, 145
HpyF3I CTNAG 5 cut(s) 116, 247, 260, 281, 487
HpySE526I ACGT 1 cut(s) 272
Hsp92II CATG 1 cut(s) 504
Kzo9I GATC 3 cut(s) 131, 163, 302
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 6 cut(s) 87, 114, 128, 269, 330, 454
Lsp1109I GCAGC 1 cut(s) 387
LweI GCATC 1 cut(s) 16
MaeI CTAG 2 cut(s) 6, 296
MaeII ACGT 1 cut(s) 272
MaeIII GTNAC 2 cut(s) 353, 493
MalI GATC 3 cut(s) 133, 165, 304
MboI GATC 3 cut(s) 131, 163, 302
MboII GAAGA 6 cut(s) 59, 80, 230, 305, 341, 472
MfeI CAATTG 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 534
MlsI TGGCCA 1 cut(s) 105
MluCI AATT 4 cut(s) 107, 123, 430, 516
MluNI TGGCCA 1 cut(s) 105
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 2 cut(s) 215, 437
MnlI CCTC 7 cut(s) 43, 70, 125, 179, 191, 205, 420
Mox20I TGGCCA 1 cut(s) 105
MroXI GAANNNNTTC 1 cut(s) 312
MscI TGGCCA 1 cut(s) 105
MseI TTAA 3 cut(s) 209, 420, 515
MslI CAYNNNNRTG 1 cut(s) 479
Msp20I TGGCCA 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 102
MunI CAATTG 1 cut(s) 107
MvaI CCWGG 1 cut(s) 102
MwoI GCNNNNNNNGC 3 cut(s) 50, 111, 145
NdeII GATC 3 cut(s) 131, 163, 302
NlaIII CATG 1 cut(s) 504
NmuCI GTSAC 2 cut(s) 353, 493
NspI RCATGY 1 cut(s) 504
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 1 cut(s) 402
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
Psp1406I AACGTT 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 100
PspFI CCCAGC 1 cut(s) 468
PspGI CCWGG 1 cut(s) 100
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 479
SaqAI TTAA 3 cut(s) 209, 420, 515
SatI GCNGC 1 cut(s) 401
Sau3AI GATC 3 cut(s) 131, 163, 302
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 1 cut(s) 534
SetI ASST 9 cut(s) 46, 141, 150, 261, 275, 375, 402, 412, 452
SfaNI GCATC 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 479
Sse9I AATT 4 cut(s) 107, 123, 430, 516
SsiI CCGC 1 cut(s) 191
SspMI CTAG 2 cut(s) 6, 296
StyD4I CCNGG 1 cut(s) 100
TaiI ACGT 1 cut(s) 275
TaqI TCGA 2 cut(s) 130, 171
TasI AATT 4 cut(s) 107, 123, 430, 516
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 3 cut(s) 209, 420, 515
Tru9I TTAA 3 cut(s) 209, 420, 515
TseFI GTSAC 2 cut(s) 353, 493
TseI GCWGC 1 cut(s) 400
Tsp45I GTSAC 2 cut(s) 353, 493
TspDTI ATGAA 2 cut(s) 378, 499
VneI GTGCAC 1 cut(s) 530
XceI RCATGY 1 cut(s) 504
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 2 cut(s) 6, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.