Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0021899

Physical Location & Seq

Genomic Coordinates Forward (+)

106215 .. 110493

Gene Structure 4279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G000300.1_v2.0.a1.CDS.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCATCGTCTCTGGCAACAACCTCGGCGGCTGCAACCACCAGCACAAATTTGGCTCATTATAAAACCAATAACAATACTTACAAGCACAATTGTTTATCTAATGTCTCCTTTCGTCTCTCTCCCAAGCCTAAGCTCCGATTCTTCTCCAAGGGTTGGCAGCCTAGTCGGAACTGTTCCACTGTGGTGAAAGGTCAATTGGATGAGGTAAGGTTCTTTAAATGGTTTTCGTTAGAGGATCACTTTTCAAATTTTCTTTCCTTCCTGGACATGCTCCTTGGATCATCTGTTGCCTTCAAGGTGGATGGATCATCCAATGTTGCAGCTACGCCCCCAAGAGAATTGGAGCTTCCAGCCCAGGAGTCCAAGGATCGAAAGACATCCAATGAGTCTTGTCCTGCAGTTTTGGACACAGAGGAATCAATATCTGAATTCATAGCTCAAGTTGCAAGTCTCGTAAAGCTTGTTGACTCGAGAGACATTGTTGAGCTGCAGCTGAAACAGCTTGACTTTGAAGTCATAATTCGTAAAAAGGAAGCCTTGCCTCAACCTCCGGTACCTGCTCCAGTGCCTATGATGCAAGCAGCCCCTCCTCCAGTTGCTCCAGCAGCTCCTGCCTCTTCGTCTGCCCCATCATCTCCTCCAGCAACTTTCCCTGCACCATCTTCACCTAATGCTAAGTCAGCCAAAACATCGCTGCCCCCTCTTAAATGTCCTATGGCAGGGACATTCTATCGAAGTCCGGCACCTGGTGAACCACCCCTTGTGAAGGTTGGGGACAAAATACAGAAGGGACAAGTCTTGTGTATCATTGAGGCCATGAAATTGATGAACGAGATAGAAGCTGATCAATCTGGAACCGTAGTTGAGATCCTCGTGGAGGATGGGAAACCTGTTAGTGTCGACACGCCACTGTTTGTCATCCAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003989 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

311

Amino Acids

33.42

Weight (kDa)

6.84

Isoelectric Point (pI)

56.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16390 AT5G16390
prunus_persica	Prupe.7G000300_v2.0.a1 Prupe.7G000300_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AasI	GACNNNNNNGTC	1 cut(s)	515
Acc36I	ACCTGC	1 cut(s)	568
Acc65I	GGTACC	1 cut(s)	556
AccB1I	GGYRCC	2 cut(s)	556, 745
AccB7I	CCANNNNNTGG	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	903
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	5 cut(s)	246, 289, 316, 378, 865
AcsI	RAATTY	3 cut(s)	49, 250, 431
AdeI	CACNNNGTG	1 cut(s)	752
AfaI	GTAC	1 cut(s)	558
AfiI	CCNNNNNNNGG	5 cut(s)	156, 722, 749, 769, 880
AgsI	TTSAA	3 cut(s)	249, 298, 515
AjnI	CCWGG	3 cut(s)	264, 357, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AleI	CACNNNNGTG	1 cut(s)	185
Alw26I	GTCTC	5 cut(s)	15, 112, 122, 458, 471
AlwI	GGATC	5 cut(s)	246, 289, 316, 378, 865
AlwNI	CAGNNNCTG	1 cut(s)	614
Ama87I	CYCGRG	1 cut(s)	472
AoxI	GGCC	1 cut(s)	816
ApeKI	GCWGC	8 cut(s)	32, 160, 323, 490, 493, 584, 608, 697
ApoI	RAATTY	3 cut(s)	49, 250, 431
Asp718I	GGTACC	1 cut(s)	556
AsuHPI	GGTGA	3 cut(s)	199, 660, 764
AvaI	CYCGRG	1 cut(s)	472
BanI	GGYRCC	2 cut(s)	556, 745
BauI	CACGAG	1 cut(s)	875
BbvI	GCAGC	8 cut(s)	19, 172, 335, 477, 505, 596, 620, 684
BccI	CCATC	4 cut(s)	299, 640, 670, 878
BcgI	CGANNNNNNTGC	4 cut(s)	6, 40, 149, 183
BciT130I	CCWGG	3 cut(s)	266, 359, 750
BclI	TGATCA	1 cut(s)	847
BcoDI	GTCTC	5 cut(s)	15, 112, 122, 458, 471
BfaI	CTAG	2 cut(s)	165, 931
BfmI	CTRYAG	2 cut(s)	399, 491
BfuAI	ACCTGC	1 cut(s)	568
BisI	GCNGC	9 cut(s)	30, 33, 161, 324, 491, 494, 585, 609, 698
BlsI	GCNGC	9 cut(s)	31, 34, 162, 325, 492, 495, 586, 610, 699
Bme1390I	CCNGG	3 cut(s)	266, 359, 750
BmeT110I	CYCGRG	1 cut(s)	472
BmiI	GGNNCC	3 cut(s)	558, 747, 859
BmrFI	CCNGG	3 cut(s)	266, 359, 750
BmsI	GCATC	2 cut(s)	14, 567
BpmI	CTGGAG	4 cut(s)	549, 579, 588, 627
Bpu10I	CCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	426
BsaJI	CCNNGG	5 cut(s)	24, 150, 277, 357, 366
BsaWI	WCCGGW	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	5 cut(s)	156, 722, 749, 769, 880
Bse1I	ACTGG	2 cut(s)	566, 596
BseBI	CCWGG	3 cut(s)	266, 359, 750
BseDI	CCNNGG	5 cut(s)	24, 150, 277, 357, 366
BseGI	GGATG	6 cut(s)	208, 310, 311, 380, 889, 921
BseLI	CCNNNNNNNGG	5 cut(s)	156, 722, 749, 769, 880
BseNI	ACTGG	2 cut(s)	566, 596
BseRI	GAGGAG	2 cut(s)	582, 630
BseXI	GCAGC	8 cut(s)	19, 172, 335, 477, 505, 596, 620, 684
BsgI	GTGCAG	1 cut(s)	642
BshFI	GGCC	1 cut(s)	818
BshNI	GGYRCC	2 cut(s)	556, 745
BsiHKCI	CYCGRG	1 cut(s)	472
BsiSI	CCGG	2 cut(s)	554, 743
BslFI	GGGAC	3 cut(s)	739, 791, 807
BslI	CCNNNNNNNGG	5 cut(s)	156, 722, 749, 769, 880
BsmAI	GTCTC	5 cut(s)	15, 112, 122, 458, 471
BsmBI	CGTCTC	2 cut(s)	15, 122
BsmFI	GGGAC	3 cut(s)	739, 791, 807
BsnI	GGCC	1 cut(s)	818
BsoBI	CYCGRG	1 cut(s)	472
Bsp143I	GATC	6 cut(s)	238, 281, 308, 370, 847, 870
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	818
BspLI	GGNNCC	3 cut(s)	558, 747, 859
BspMAI	CTGCAG	2 cut(s)	403, 495
BspMI	ACCTGC	1 cut(s)	568
BspPI	GGATC	5 cut(s)	246, 289, 316, 378, 865
BspT107I	GGYRCC	2 cut(s)	556, 745
BsrI	ACTGG	2 cut(s)	566, 596
BssECI	CCNNGG	5 cut(s)	24, 150, 277, 357, 366
BssMI	GATC	6 cut(s)	238, 281, 308, 370, 847, 870
BssSI	CACGAG	1 cut(s)	875
BssT1I	CCWWGG	3 cut(s)	150, 277, 366
Bst2BI	CACGAG	1 cut(s)	875
Bst2UI	CCWGG	3 cut(s)	266, 359, 750
Bst4CI	ACNGT	4 cut(s)	176, 184, 862, 915
Bst6I	CTCTTC	1 cut(s)	625
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstC8I	GCNNGC	1 cut(s)	582
BstDEI	CTNAG	2 cut(s)	132, 678
BstENI	CCTNNNNNAGG	3 cut(s)	720, 767, 878
BstF5I	GGATG	6 cut(s)	208, 310, 311, 380, 889, 921
BstKTI	GATC	6 cut(s)	241, 284, 311, 373, 850, 873
BstMAI	GTCTC	5 cut(s)	15, 112, 122, 458, 471
BstMBI	GATC	6 cut(s)	238, 281, 308, 370, 847, 870
BstMWI	GCNNNNNNNGC	6 cut(s)	446, 502, 577, 608, 614, 683
BstNI	CCWGG	3 cut(s)	266, 359, 750
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	3 cut(s)	264, 357, 748
BstSFI	CTRYAG	2 cut(s)	399, 491
BstV1I	GCAGC	8 cut(s)	19, 172, 335, 477, 505, 596, 620, 684
BstX2I	RGATCY	1 cut(s)	870
BstYI	RGATCY	1 cut(s)	870
BsuRI	GGCC	1 cut(s)	818
BtgZI	GCGATG	1 cut(s)	678
BtsCI	GGATG	6 cut(s)	208, 310, 311, 380, 889, 921
BtsIMutI	CAGTG	3 cut(s)	180, 573, 911
BveI	ACCTGC	1 cut(s)	568
Cac8I	GCNNGC	1 cut(s)	582
CaiI	CAGNNNCTG	1 cut(s)	614
CsiI	ACCWGGT	1 cut(s)	748
Csp6I	GTAC	1 cut(s)	557
CviAII	CATG	2 cut(s)	271, 820
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	2 cut(s)	132, 678
DpnI	GATC	6 cut(s)	240, 283, 310, 372, 849, 872
DpnII	GATC	6 cut(s)	238, 281, 308, 370, 847, 870
DraI	TTTAAA	1 cut(s)	220
DraIII	CACNNNGTG	1 cut(s)	752
DrdI	GACNNNNNNGTC	1 cut(s)	515
DseDI	GACNNNNNNGTC	1 cut(s)	515
Eam1104I	CTCTTC	1 cut(s)	625
EarI	CTCTTC	1 cut(s)	625
Eco130I	CCWWGG	3 cut(s)	150, 277, 366
Eco88I	CYCGRG	1 cut(s)	472
EcoNI	CCTNNNNNAGG	3 cut(s)	720, 767, 878
EcoRI	GAATTC	1 cut(s)	431
EcoRII	CCWGG	3 cut(s)	264, 357, 748
EcoT14I	CCWWGG	3 cut(s)	150, 277, 366
ErhI	CCWWGG	3 cut(s)	150, 277, 366
Esp3I	CGTCTC	2 cut(s)	15, 122
FaeI	CATG	2 cut(s)	274, 823
FaiI	YATR	7 cut(s)	63, 272, 437, 521, 575, 719, 821
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
FaqI	GGGAC	3 cut(s)	739, 791, 807
FatI	CATG	2 cut(s)	270, 819
FbaI	TGATCA	1 cut(s)	847
FblI	GTMKAC	1 cut(s)	903
Fnu4HI	GCNGC	9 cut(s)	30, 33, 161, 324, 491, 494, 585, 609, 698
FokI	GGATG	6 cut(s)	215, 298, 317, 367, 896, 908
Fsp4HI	GCNGC	9 cut(s)	30, 33, 161, 324, 491, 494, 585, 609, 698
FspBI	CTAG	2 cut(s)	165, 931
GluI	GCNGC	9 cut(s)	30, 33, 161, 324, 491, 494, 585, 609, 698
GsuI	CTGGAG	4 cut(s)	549, 579, 588, 627
HaeIII	GGCC	1 cut(s)	818
HapII	CCGG	2 cut(s)	554, 743
Hin1II	CATG	2 cut(s)	274, 823
HincII	GTYRAC	2 cut(s)	469, 904
HindII	GTYRAC	2 cut(s)	469, 904
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	5 cut(s)	141, 362, 389, 419, 470
HpaII	CCGG	2 cut(s)	554, 743
HphI	GGTGA	3 cut(s)	199, 660, 764
Hpy166II	GTNNAC	3 cut(s)	469, 755, 904
Hpy188I	TCNGA	3 cut(s)	140, 171, 430
Hpy188III	TCNNGA	2 cut(s)	474, 855
Hpy8I	GTNNAC	3 cut(s)	469, 755, 904
HpyAV	CCTTC	4 cut(s)	271, 304, 763, 784
HpyCH4III	ACNGT	4 cut(s)	176, 184, 862, 915
HpyCH4V	TGCA	7 cut(s)	35, 323, 401, 449, 493, 580, 659
HpyF10VI	GCNNNNNNNGC	6 cut(s)	446, 502, 577, 608, 614, 683
HpyF3I	CTNAG	2 cut(s)	132, 678
Hsp92II	CATG	2 cut(s)	274, 823
KpnI	GGTACC	1 cut(s)	560
Ksp22I	TGATCA	1 cut(s)	847
Kzo9I	GATC	6 cut(s)	238, 281, 308, 370, 847, 870
LmnI	GCTCC	6 cut(s)	141, 279, 346, 568, 607, 616
Lsp1109I	GCAGC	8 cut(s)	19, 172, 335, 477, 505, 596, 620, 684
LweI	GCATC	2 cut(s)	14, 567
MabI	ACCWGGT	1 cut(s)	748
MaeI	CTAG	2 cut(s)	165, 931
MalI	GATC	6 cut(s)	240, 283, 310, 372, 849, 872
MboI	GATC	6 cut(s)	238, 281, 308, 370, 847, 870
MboII	GAAGA	3 cut(s)	136, 612, 657
MfeI	CAATTG	2 cut(s)	91, 197
MflI	RGATCY	1 cut(s)	870
MluCI	AATT	8 cut(s)	49, 91, 197, 250, 341, 431, 522, 824
MlyI	GAGTC	3 cut(s)	371, 398, 464
MmeI	TCCRAC	1 cut(s)	149
MseI	TTAA	2 cut(s)	219, 708
MslI	CAYNNNNRTG	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	496
MspI	CCGG	2 cut(s)	554, 743
MspR9I	CCNGG	3 cut(s)	266, 359, 750
MunI	CAATTG	2 cut(s)	91, 197
MvaI	CCWGG	3 cut(s)	266, 359, 750
MwoI	GCNNNNNNNGC	6 cut(s)	446, 502, 577, 608, 614, 683
NdeII	GATC	6 cut(s)	238, 281, 308, 370, 847, 870
NlaIII	CATG	2 cut(s)	274, 823
NlaIV	GGNNCC	3 cut(s)	558, 747, 859
NmeAIII	GCCGAG	1 cut(s)	5
NspI	RCATGY	1 cut(s)	274
OliI	CACNNNNGTG	1 cut(s)	185
PaeR7I	CTCGAG	1 cut(s)	472
PfeI	GAWTC	2 cut(s)	141, 419
PflMI	CCANNNNNTGG	1 cut(s)	156
PfoI	TCCNGGA	1 cut(s)	264
PkrI	GCNGC	9 cut(s)	31, 34, 162, 325, 492, 495, 586, 610, 699
PleI	GAGTC	3 cut(s)	370, 397, 464
PpsI	GAGTC	3 cut(s)	370, 397, 464
PsiI	TTATAA	1 cut(s)	63
Psp6I	CCWGG	3 cut(s)	264, 357, 748
PspGI	CCWGG	3 cut(s)	264, 357, 748
PspN4I	GGNNCC	3 cut(s)	558, 747, 859
PstI	CTGCAG	2 cut(s)	403, 495
PstNI	CAGNNNCTG	1 cut(s)	614
PsuI	RGATCY	1 cut(s)	870
PvuII	CAGCTG	1 cut(s)	496
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
RseI	CAYNNNNRTG	1 cut(s)	185
SalI	GTCGAC	1 cut(s)	902
SaqAI	TTAA	2 cut(s)	219, 708
SatI	GCNGC	9 cut(s)	30, 33, 161, 324, 491, 494, 585, 609, 698
Sau3AI	GATC	6 cut(s)	238, 281, 308, 370, 847, 870
SchI	GAGTC	3 cut(s)	371, 398, 464
ScrFI	CCNGG	3 cut(s)	266, 359, 750
SexAI	ACCWGGT	1 cut(s)	748
SfaNI	GCATC	2 cut(s)	14, 567
SfcI	CTRYAG	2 cut(s)	399, 491
Sfr274I	CTCGAG	1 cut(s)	472
SlaI	CTCGAG	1 cut(s)	472
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	2 cut(s)	441, 472
SmoI	CTYRAG	2 cut(s)	441, 472
Sse9I	AATT	8 cut(s)	49, 91, 197, 250, 341, 431, 522, 824
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	2 cut(s)	165, 931
StyD4I	CCNGG	3 cut(s)	264, 357, 748
StyI	CCWWGG	3 cut(s)	150, 277, 366
TaaI	ACNGT	4 cut(s)	176, 184, 862, 915
TaqI	TCGA	4 cut(s)	373, 473, 736, 903
TasI	AATT	8 cut(s)	49, 91, 197, 250, 341, 431, 522, 824
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	2 cut(s)	141, 419
Tru1I	TTAA	2 cut(s)	219, 708
Tru9I	TTAA	2 cut(s)	219, 708
TscAI	CASTG	3 cut(s)	187, 573, 918
TseI	GCWGC	8 cut(s)	32, 160, 323, 490, 493, 584, 608, 697
TspDTI	ATGAA	3 cut(s)	424, 836, 845
TspRI	CASTG	3 cut(s)	187, 573, 918
Van91I	CCANNNNNTGG	1 cut(s)	156
XagI	CCTNNNNNAGG	3 cut(s)	720, 767, 878
XapI	RAATTY	3 cut(s)	49, 250, 431
XceI	RCATGY	1 cut(s)	274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XhoI	CTCGAG	1 cut(s)	472
XmiI	GTMKAC	1 cut(s)	903
XspI	CTAG	2 cut(s)	165, 931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.