Prupe.7G015700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0024542
Physical Location & Seq
Reverse (-)
2272091 .. 2275513
3423 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G015700.1_v2.0.a1.CDS.4

Sequence Viewer

Length: 1254 bp
ATGGCTCCGATTATGGGTAGTAGTGGTCGTCCTCCAAAGTACACTGATCCAGATAACTTTACTATAGAGGTTCACCATGGAGGGAATTTTAAGAAGGGGAAATATTTGGGTGGTAGGGTAGAGTTTGCTGGTTTGAATGTTGCAGATAAAGGGACAAGCTTTAATGTTGTGGTAGACACATTGGATGGTGATGGTGATGATGAATTTGAAGATAATGATGAAGATCTTAATGAGAATTATGAATATGTAGATGAAGATAAGAAGGCCAATGAAGAAGTAAATGTAGATGATCGCGATTTTGATAAGTATGTGGTAGATGAAGGTACTGAATCCTTACATAAAGAGCTTGGAGAGGCCTCTAGTGGCGAGTACCATTGCAATTCAGAGGATTTAAGAAGTCTTTCAGAAAAGGAAGAACATGATGAAGTTGAAGGGCAGAGGCTTTGGGCAGCAGTTTGGGCAGCAGTTCGGGCAACAACAATACCTACTTTTGATGTTGAGATGGATAGGATGTTATCTGAGTCACATGAGGCTTATAAGTGGCTTAAAAATAGGCCAGCATCTAATTGGAATAGATCACATTTCTCATGCAATGCTAAATGTGATATTCTTCTTAATAACTTGTGTGAGTGTTTTAATGCTGCCATTTTGGAAGTAAGGGATAAGCCCATTGTGAGTTTGCTGGAGATAATTAGAATATATCTCATAATACAACTGACAGTGGTCAATGCATTACCAATTATGAGAGTGATGAGGCCTCTTGACTTTGTTCATGCCCTTTACAAAAGGTTTGCCTATGAAAGAGCTTACGAGGGCTACATTTCTCCAATGCCTAGTTCATATCATTGGAGAAAAACTGGACACAGACCCATCAAGCCTTCTTTTTATCACAAACAACTAGGAAGGCCAATGATTAGCAGACAAAAGGAAGCTGATGAGATACCAAGAGGGGCAACCAAACTGAGGAGGTATAGCATTGTTATAACTTGTACCAAATGTGGAGTGCAAGGCCACAATGCTGTTAGTTGTACAACACAAGGACAAGCTTCTACTAGAGGAAGGCGAGGAGGAACAAGTAGGCCAAGAATAGCAAGAGGAGTTGCTCCAACAAGTGAGGGTTTAAATGGAAGTGGTCAGCAACAACAACCTCAAACTTCAATCCAGCCTAGGAGTCAAAGTCACCCAAAGTTTGGTGCAAGTCAAATTCAATGTTTTATAATTCTGGGTGGTTTTGATGGATTTGACCTTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

418

Amino Acids

47.0

Weight (kDa)

5.86

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024542)

Species Orthologous Gene IDs
prunus_persica Prupe.6G125700_v2.0.a1 Prupe.6G125700_v2.0.a1 Prupe.7G015700_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 537, 983, 1217
AccB7I CCANNNNNTGG 1 cut(s) 1190
AccI GTMKAC 1 cut(s) 174
AccII CGCG 1 cut(s) 294
AclWI GGATC 1 cut(s) 41
AcsI RAATTY 3 cut(s) 85, 203, 1203
AfaI GTAC 5 cut(s) 41, 325, 371, 991, 1030
AfiI CCNNNNNNNGG 3 cut(s) 14, 963, 1190
AgsI TTSAA 5 cut(s) 136, 209, 431, 1158, 1208
AjuI GAANNNNNNNTTGG 2 cut(s) 820, 852
AluBI AGCT 5 cut(s) 159, 346, 806, 932, 1046
AluI AGCT 5 cut(s) 159, 346, 806, 932, 1046
AlwI GGATC 1 cut(s) 41
AoxI GGCC 7 cut(s) 264, 354, 554, 755, 905, 1009, 1079
ApeKI GCWGC 3 cut(s) 449, 461, 641
ApoI RAATTY 3 cut(s) 85, 203, 1203
Asp700I GAANNNNTTC 1 cut(s) 400
AspA2I CCTAGG 1 cut(s) 1166
AsuHPI GGTGA 4 cut(s) 65, 200, 206, 1172
AvrII CCTAGG 1 cut(s) 1166
BbvI GCAGC 3 cut(s) 461, 473, 628
BccI CCATC 5 cut(s) 179, 185, 496, 878, 1229
BfaI CTAG 5 cut(s) 360, 834, 899, 1053, 1167
BfmI CTRYAG 1 cut(s) 63
BglII AGATCT 1 cut(s) 223
BisI GCNGC 3 cut(s) 450, 462, 642
BlnI CCTAGG 1 cut(s) 1166
BlsI GCNGC 3 cut(s) 451, 463, 643
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 569
BoxI GACNNNNGTC 1 cut(s) 722
BpmI CTGGAG 1 cut(s) 704
BsaBI GATNNNNATC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 76, 1166
BsaXI ACNNNNNCTCC 2 cut(s) 1162, 1192
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 963, 1190
Bse1I ACTGG 1 cut(s) 862
Bse3DI GCAATG 2 cut(s) 373, 598
Bse8I GATNNNNATC 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 76, 1166
BseGI GGATG 2 cut(s) 190, 516
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 3 cut(s) 14, 963, 1190
BseMI GCAATG 2 cut(s) 373, 598
BseMII CTCAG 2 cut(s) 510, 953
BseNI ACTGG 1 cut(s) 862
BseRI GAGGAG 3 cut(s) 979, 1080, 1110
BseXI GCAGC 3 cut(s) 461, 473, 628
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 7 cut(s) 266, 356, 556, 757, 907, 1011, 1081
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 3 cut(s) 14, 963, 1190
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 7 cut(s) 266, 356, 556, 757, 907, 1011, 1081
Bsp1407I TGTACA 1 cut(s) 1028
Bsp143I GATC 4 cut(s) 46, 223, 289, 575
Bsp19I CCATGG 1 cut(s) 76
Bsp68I TCGCGA 1 cut(s) 294
BspANI GGCC 7 cut(s) 266, 356, 556, 757, 907, 1011, 1081
BspCNI CTCAG 2 cut(s) 511, 954
BspFNI CGCG 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 41
BsrDI GCAATG 2 cut(s) 373, 598
BsrGI TGTACA 1 cut(s) 1028
BsrI ACTGG 1 cut(s) 862
BssECI CCNNGG 2 cut(s) 76, 1166
BssMI GATC 4 cut(s) 46, 223, 289, 575
BssT1I CCWWGG 2 cut(s) 76, 1166
Bst4CI ACNGT 1 cut(s) 721
BstAUI TGTACA 1 cut(s) 1028
BstC8I GCNNGC 1 cut(s) 558
BstDEI CTNAG 2 cut(s) 519, 962
BstDSI CCRYGG 1 cut(s) 76
BstF5I GGATG 2 cut(s) 190, 516
BstFNI CGCG 1 cut(s) 294
BstKTI GATC 4 cut(s) 49, 226, 292, 578
BstMBI GATC 4 cut(s) 46, 223, 289, 575
BstMWI GCNNNNNNNGC 2 cut(s) 458, 470
BstPAI GACNNNNGTC 1 cut(s) 722
BstSFI CTRYAG 1 cut(s) 63
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 3 cut(s) 461, 473, 628
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BsuRI GGCC 7 cut(s) 266, 356, 556, 757, 907, 1011, 1081
BtgI CCRYGG 1 cut(s) 76
BtsCI GGATG 2 cut(s) 190, 516
BtsIMutI CAGTG 2 cut(s) 42, 726
BtuMI TCGCGA 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 558
Csp6I GTAC 5 cut(s) 40, 324, 370, 990, 1029
CviAII CATG 5 cut(s) 77, 419, 527, 588, 773
CviQI GTAC 5 cut(s) 40, 324, 370, 990, 1029
DdeI CTNAG 2 cut(s) 519, 962
DpnI GATC 4 cut(s) 48, 225, 291, 577
DpnII GATC 4 cut(s) 46, 223, 289, 575
DraI TTTAAA 1 cut(s) 1122
Eco130I CCWWGG 2 cut(s) 76, 1166
Eco147I AGGCCT 2 cut(s) 356, 757
EcoT14I CCWWGG 2 cut(s) 76, 1166
EcoT22I ATGCAT 1 cut(s) 733
ErhI CCWWGG 2 cut(s) 76, 1166
FaeI CATG 5 cut(s) 80, 422, 530, 591, 776
FaqI GGGAC 1 cut(s) 166
FatI CATG 5 cut(s) 76, 418, 526, 587, 772
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 3 cut(s) 450, 462, 642
FokI GGATG 2 cut(s) 197, 523
Fsp4HI GCNGC 3 cut(s) 450, 462, 642
FspBI CTAG 5 cut(s) 360, 834, 899, 1053, 1167
GluI GCNGC 3 cut(s) 450, 462, 642
GsuI CTGGAG 1 cut(s) 704
HaeIII GGCC 7 cut(s) 266, 356, 556, 757, 907, 1011, 1081
Hin1II CATG 5 cut(s) 80, 422, 530, 591, 776
HindIII AAGCTT 2 cut(s) 157, 1044
HinfI GANTC 3 cut(s) 329, 521, 1171
HphI GGTGA 4 cut(s) 65, 200, 206, 1172
Hpy166II GTNNAC 3 cut(s) 42, 73, 175
Hpy188I TCNGA 4 cut(s) 9, 385, 406, 520
Hpy188III TCNNGA 3 cut(s) 50, 293, 761
Hpy8I GTNNAC 3 cut(s) 42, 73, 175
HpyAV CCTTC 7 cut(s) 88, 256, 314, 425, 888, 897, 1053
HpyCH4III ACNGT 1 cut(s) 721
HpyCH4V TGCA 6 cut(s) 143, 378, 591, 731, 1006, 1196
HpyF10VI GCNNNNNNNGC 2 cut(s) 458, 470
HpyF3I CTNAG 2 cut(s) 519, 962
Hsp92II CATG 5 cut(s) 80, 422, 530, 591, 776
Kzo9I GATC 4 cut(s) 46, 223, 289, 575
LmnI GCTCC 2 cut(s) 10, 1108
LpnPI CCDG 7 cut(s) 63, 114, 570, 668, 843, 1175, 1208
Lsp1109I GCAGC 3 cut(s) 461, 473, 628
LweI GCATC 1 cut(s) 569
MaeI CTAG 5 cut(s) 360, 834, 899, 1053, 1167
MaeIII GTNAC 2 cut(s) 522, 1178
MalI GATC 4 cut(s) 48, 225, 291, 577
MboI GATC 4 cut(s) 46, 223, 289, 575
MboII GAAGA 6 cut(s) 221, 233, 266, 284, 425, 602
MflI RGATCY 1 cut(s) 223
MluCI AATT 9 cut(s) 85, 203, 235, 379, 565, 690, 738, 1203, 1218
MlyI GAGTC 2 cut(s) 530, 1180
MmeI TCCRAC 1 cut(s) 1130
Mph1103I ATGCAT 1 cut(s) 733
MroXI GAANNNNTTC 1 cut(s) 400
MseI TTAA 9 cut(s) 90, 162, 228, 392, 546, 615, 636, 1121, 1252
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 458, 470
NcoI CCATGG 1 cut(s) 76
NdeII GATC 4 cut(s) 46, 223, 289, 575
NlaIII CATG 5 cut(s) 80, 422, 530, 591, 776
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 522, 1178
NruI TCGCGA 1 cut(s) 294
NsiI ATGCAT 1 cut(s) 733
PceI AGGCCT 2 cut(s) 356, 757
PdmI GAANNNNTTC 1 cut(s) 400
PfeI GAWTC 1 cut(s) 329
PflMI CCANNNNNTGG 1 cut(s) 1190
PkrI GCNGC 3 cut(s) 451, 463, 643
PleI GAGTC 2 cut(s) 529, 1179
PpsI GAGTC 2 cut(s) 529, 1179
PshAI GACNNNNGTC 1 cut(s) 722
PsiI TTATAA 3 cut(s) 537, 983, 1217
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 223
RruI TCGCGA 1 cut(s) 294
RsaI GTAC 5 cut(s) 41, 325, 371, 991, 1030
RsaNI GTAC 5 cut(s) 40, 324, 370, 990, 1029
SaqAI TTAA 9 cut(s) 90, 162, 228, 392, 546, 615, 636, 1121, 1252
SatI GCNGC 3 cut(s) 450, 462, 642
Sau3AI GATC 4 cut(s) 46, 223, 289, 575
SchI GAGTC 2 cut(s) 530, 1180
SfaNI GCATC 1 cut(s) 569
SfcI CTRYAG 1 cut(s) 63
Sse9I AATT 9 cut(s) 85, 203, 235, 379, 565, 690, 738, 1203, 1218
SseBI AGGCCT 2 cut(s) 356, 757
SspI AATATT 1 cut(s) 104
SspMI CTAG 5 cut(s) 360, 834, 899, 1053, 1167
StuI AGGCCT 2 cut(s) 356, 757
StyI CCWWGG 2 cut(s) 76, 1166
TaaI ACNGT 1 cut(s) 721
TasI AATT 9 cut(s) 85, 203, 235, 379, 565, 690, 738, 1203, 1218
TatI WGTACW 2 cut(s) 39, 1028
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 9 cut(s) 90, 162, 228, 392, 546, 615, 636, 1121, 1252
Tru9I TTAA 9 cut(s) 90, 162, 228, 392, 546, 615, 636, 1121, 1252
TscAI CASTG 2 cut(s) 49, 726
TseFI GTSAC 2 cut(s) 522, 1178
TseI GCWGC 3 cut(s) 449, 461, 641
Tsp45I GTSAC 2 cut(s) 522, 1178
TspRI CASTG 2 cut(s) 49, 726
Van91I CCANNNNNTGG 1 cut(s) 1190
XapI RAATTY 3 cut(s) 85, 203, 1203
XcmI CCANNNNNNNNNTGG 1 cut(s) 564
XmaJI CCTAGG 1 cut(s) 1166
XmiI GTMKAC 1 cut(s) 174
XmnI GAANNNNTTC 1 cut(s) 400
XspI CTAG 5 cut(s) 360, 834, 899, 1053, 1167
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.