Prupe.7G016400_v2.0.a1

Cyclic dof factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0029101
Physical Location & Seq
Forward (+)
2339148 .. 2342716
3569 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G016400.2

Sequence Viewer

Length: 1425 bp
ATGTATGTCAAGGCAAAGGCCATCAGTTTTTGTGGAGATATGTCTGAGACAGAGAGCAGAAGCAATGAAAATAGCAATGACATCAAGCTCTTTGGGAGGACCATTCCATTGCTTCAAACCCAGATTGCAGCTATCACTTGCAAGAATTCCCAGGTTCCACCCAAGTCTCAATTCATGGATTCTTGCACTGAATTAACAAAAGCAGAAGCTGATGGCCCTTGTGCAGAAAATTCTGTGCAGGCAGGGACTTCAGCGATTTGCAAGGAGGAAGAAAAAAGTCGGATGCAGGTGAATGAGGCAAGAGTAAATGCTAAATCCAATTCAAAACAAGCGGAGAACAGAATTTTAGAGCAAGAGGAAGATTTTCAGAAGCCAGACAAGGTCCTTCCTTGTCCACGATGCAACAGCCTAGACACAAAGTTTTGTTACTTCAATAACTACAATGTCAACCAACCTAGGCACTTCTGCAAAAACTGCCAAAGATATTGGACAGCTGGGGGAACAATGAGAAGTGTTCCTGTGGGTGCTGGGCGACGAAAGAACAAGCATCTTGCTTCCCAATACCATCAGATAATAGTATCCTCTGATGGAGTACCATCAACCAGGTTAGAAACTACAGATTCCATTAACCATCAGCTTCTCTCATGCAGTAAATCTTCAAGCACTTTTGGTCTTCCAGATAGAGCTGGAACAGTATTAAAATTTGGCCATGAAGCACCTCTTTGTGAATCTATGGATACTGTGGTTAATCTTAGAGATCTAAGGACCTGTGTTGAGATAGGTTCTGTCAGTGGCAGAGAAAGTGGAGACGAGCCCTCATGCGTGTCTTCCGTGACAGCATGTGGTAACCAGGGAAGTGAATTATCCAAAAATATTTTGCAGAGGGATGGGATTGGGTTACAAGGGTCTTGTAGTGAGCCTAATATCTCACATCCTTTGAATTACTACCCAATTGCTCCATTGGTTTTCCGTTGGAATCCAGGTTGGCGAAATGCAGCTCCTCCTGCAGCACCACAGCATTCTCAATCCATTTGTGTACAAAATTGCACGACTCCTAATCAAGTCCAGTGGTACCCCACACCAGTTCTGGTCGTTCCTGGCCCTTGCCCACAAAGTATTCCCTTACAAACTGTTCCAGCACCGTCTTGGGGCTGTATGCCCGTATGCCCTGCTGGAATGGGAAATTTATTGTTGTCTGGATCTAATGGTTGCGTATCTCCATCATCCTCTACAAGTAATAGTTGCTGCTCAGGCAATGGCTCACCGACCCTTGGCAAGCATTCGAGGGATTCAAATATTATGGATGAAGAGAAATCGGAAAACCGTGTTTTGGTTCCAAAACCTTTGAGAGTTGATGACCCGGATGAGGCTTCGAAGAGTCCTATATGGGCCAGTCTAGGCATTAAGCGTGACCTCAAAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

475

Amino Acids

51.46

Weight (kDa)

7.71

Isoelectric Point (pI)

55.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029101)

Species Orthologous Gene IDs
prunus_persica Prupe.7G016400_v2.0.a1 Prupe.7G016400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 277
Acc36I ACCTGC 1 cut(s) 277
Acc65I GGTACC 1 cut(s) 1071
AccB1I GGYRCC 1 cut(s) 1071
AciI CCGC 1 cut(s) 332
AclWI GGATC 1 cut(s) 1207
AcoI YGGCCR 1 cut(s) 706
AcsI RAATTY 5 cut(s) 145, 229, 342, 701, 1183
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 3 cut(s) 594, 1038, 1073
AfiI CCNNNNNNNGG 4 cut(s) 1148, 1271, 1330, 1366
AgsI TTSAA 6 cut(s) 116, 324, 433, 660, 940, 1293
AjnI CCWGG 5 cut(s) 150, 602, 849, 979, 1096
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 7 cut(s) 88, 131, 209, 494, 637, 686, 998
AluI AGCT 7 cut(s) 88, 131, 209, 494, 637, 686, 998
Alw26I GTCTC 3 cut(s) 41, 171, 801
AlwI GGATC 1 cut(s) 1207
AlwNI CAGNNNCTG 1 cut(s) 209
AoxI GGCC 5 cut(s) 18, 214, 706, 1099, 1389
ApeKI GCWGC 4 cut(s) 128, 995, 1007, 1245
ApoI RAATTY 5 cut(s) 145, 229, 342, 701, 1183
Asp700I GAANNNNTTC 1 cut(s) 363
Asp718I GGTACC 1 cut(s) 1071
AspA2I CCTAGG 1 cut(s) 455
AspS9I GGNCC 6 cut(s) 99, 215, 382, 765, 1100, 1389
AsuC2I CCSGG 1 cut(s) 1361
AsuHPI GGTGA 2 cut(s) 301, 1254
AsuII TTCGAA 1 cut(s) 1373
AvaII GGWCC 3 cut(s) 99, 382, 765
AvrII CCTAGG 1 cut(s) 455
BaeI ACNNNNGTAYC 2 cut(s) 729, 762
BalI TGGCCA 1 cut(s) 708
BanI GGYRCC 1 cut(s) 1071
BanII GRGCYC 1 cut(s) 816
BbsI GAAGAC 2 cut(s) 665, 819
BbvI GCAGC 4 cut(s) 140, 1007, 1019, 1232
BccI CCATC 8 cut(s) 29, 206, 573, 581, 604, 639, 881, 1228
BciT130I CCWGG 5 cut(s) 152, 604, 851, 981, 1098
BciVI GTATCC 2 cut(s) 589, 730
BcnI CCSGG 1 cut(s) 1361
BcoDI GTCTC 3 cut(s) 41, 171, 801
BfaI CTAG 3 cut(s) 410, 456, 1397
BfmI CTRYAG 2 cut(s) 615, 1005
BfuAI ACCTGC 1 cut(s) 277
BfuI GTATCC 2 cut(s) 589, 730
BglII AGATCT 1 cut(s) 757
BisI GCNGC 4 cut(s) 129, 996, 1008, 1246
BlnI CCTAGG 1 cut(s) 455
BlsI GCNGC 4 cut(s) 130, 997, 1009, 1247
Bme1390I CCNGG 6 cut(s) 152, 604, 851, 981, 1098, 1361
Bme18I GGWCC 3 cut(s) 99, 382, 765
BmgT120I GGNCC 6 cut(s) 99, 215, 382, 765, 1100, 1389
BmiI GGNNCC 3 cut(s) 156, 1073, 1335
BmrFI CCNGG 6 cut(s) 152, 604, 851, 981, 1098, 1361
BmsI GCATC 3 cut(s) 273, 389, 556
BpiI GAAGAC 2 cut(s) 665, 819
Bpu10I CCTNAGC 1 cut(s) 1249
Bpu14I TTCGAA 1 cut(s) 1373
BpuMI CCSGG 1 cut(s) 1361
BsaJI CCNNGG 4 cut(s) 150, 455, 850, 1270
Bsc4I CCNNNNNNNGG 4 cut(s) 1148, 1271, 1330, 1366
Bse1I ACTGG 3 cut(s) 1066, 1082, 1392
Bse3DI GCAATG 4 cut(s) 70, 82, 107, 1261
BseBI CCWGG 5 cut(s) 152, 604, 851, 981, 1098
BseDI CCNNGG 4 cut(s) 150, 455, 850, 1270
BseGI GGATG 6 cut(s) 288, 892, 931, 1223, 1309, 1369
BseLI CCNNNNNNNGG 4 cut(s) 1148, 1271, 1330, 1366
BseMI GCAATG 4 cut(s) 70, 82, 107, 1261
BseMII CTCAG 2 cut(s) 36, 1263
BseNI ACTGG 3 cut(s) 1066, 1082, 1392
BseRI GAGGAG 1 cut(s) 990
BseXI GCAGC 4 cut(s) 140, 1007, 1019, 1232
BseYI CCCAGC 2 cut(s) 494, 527
BsgI GTGCAG 2 cut(s) 243, 257
BshFI GGCC 5 cut(s) 20, 216, 708, 1101, 1391
BshNI GGYRCC 1 cut(s) 1071
BsiSI CCGG 1 cut(s) 1361
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 4 cut(s) 1148, 1271, 1330, 1366
BsmAI GTCTC 3 cut(s) 41, 171, 801
BsmBI CGTCTC 1 cut(s) 801
BsmFI GGGAC 1 cut(s) 259
BsmI GAATGC 2 cut(s) 1018, 1279
BsnI GGCC 5 cut(s) 20, 216, 708, 1101, 1391
Bsp119I TTCGAA 1 cut(s) 1373
Bsp1286I GDGCHC 1 cut(s) 816
Bsp1407I TGTACA 1 cut(s) 1036
Bsp143I GATC 2 cut(s) 757, 1199
BspACI CCGC 1 cut(s) 332
BspANI GGCC 5 cut(s) 20, 216, 708, 1101, 1391
BspCNI CTCAG 2 cut(s) 37, 1262
BspLI GGNNCC 3 cut(s) 156, 1073, 1335
BspMAI CTGCAG 1 cut(s) 1009
BspMI ACCTGC 1 cut(s) 277
BspPI GGATC 1 cut(s) 1207
BspT104I TTCGAA 1 cut(s) 1373
BspT107I GGYRCC 1 cut(s) 1071
BsrDI GCAATG 4 cut(s) 70, 82, 107, 1261
BsrGI TGTACA 1 cut(s) 1036
BsrI ACTGG 3 cut(s) 1066, 1082, 1392
BssECI CCNNGG 4 cut(s) 150, 455, 850, 1270
BssMI GATC 2 cut(s) 757, 1199
BssT1I CCWWGG 2 cut(s) 455, 1270
Bst2UI CCWGG 5 cut(s) 152, 604, 851, 981, 1098
Bst4CI ACNGT 5 cut(s) 694, 742, 1132, 1143, 1325
Bst6I CTCTTC 2 cut(s) 1302, 1370
BstAPI GCANNNNNTGC 1 cut(s) 474
BstAUI TGTACA 1 cut(s) 1036
BstBI TTCGAA 1 cut(s) 1373
BstC8I GCNNGC 2 cut(s) 240, 1277
BstDEI CTNAG 4 cut(s) 45, 752, 761, 1249
BstEII GGTNACC 1 cut(s) 845
BstF5I GGATG 6 cut(s) 288, 892, 931, 1223, 1309, 1369
BstKTI GATC 2 cut(s) 760, 1202
BstMAI GTCTC 3 cut(s) 41, 171, 801
BstMBI GATC 2 cut(s) 757, 1199
BstMWI GCNNNNNNNGC 3 cut(s) 474, 1004, 1251
BstNI CCWGG 5 cut(s) 152, 604, 851, 981, 1098
BstNSI RCATGY 1 cut(s) 843
BstPI GGTNACC 1 cut(s) 845
BstSCI CCNGG 6 cut(s) 150, 602, 849, 979, 1096, 1359
BstSFI CTRYAG 2 cut(s) 615, 1005
BstV1I GCAGC 4 cut(s) 140, 1007, 1019, 1232
BstV2I GAAGAC 2 cut(s) 665, 819
BstX2I RGATCY 2 cut(s) 757, 1199
BstYI RGATCY 2 cut(s) 757, 1199
BsuI GTATCC 2 cut(s) 589, 730
BsuRI GGCC 5 cut(s) 20, 216, 708, 1101, 1391
BtsCI GGATG 6 cut(s) 288, 892, 931, 1223, 1309, 1369
BtsIMutI CAGTG 3 cut(s) 186, 796, 1073
BveI ACCTGC 1 cut(s) 277
Cac8I GCNNGC 2 cut(s) 240, 1277
CaiI CAGNNNCTG 1 cut(s) 209
Cfr13I GGNCC 6 cut(s) 99, 215, 382, 765, 1100, 1389
CsiI ACCWGGT 1 cut(s) 602
Csp6I GTAC 3 cut(s) 593, 1037, 1072
CspCI CAANNNNNGTGG 2 cut(s) 1049, 1084
CviAII CATG 5 cut(s) 175, 645, 710, 819, 840
CviQI GTAC 3 cut(s) 593, 1037, 1072
DdeI CTNAG 4 cut(s) 45, 752, 761, 1249
DpnI GATC 2 cut(s) 759, 1201
DpnII GATC 2 cut(s) 757, 1199
EaeI YGGCCR 1 cut(s) 706
Eam1104I CTCTTC 2 cut(s) 1302, 1370
EarI CTCTTC 2 cut(s) 1302, 1370
Eco130I CCWWGG 2 cut(s) 455, 1270
Eco24I GRGCYC 1 cut(s) 816
Eco47I GGWCC 3 cut(s) 99, 382, 765
Eco57I CTGAAG 1 cut(s) 234
Eco91I GGTNACC 1 cut(s) 845
EcoO109I RGGNCCY 2 cut(s) 382, 765
EcoO65I GGTNACC 1 cut(s) 845
EcoRI GAATTC 1 cut(s) 145
EcoRII CCWGG 5 cut(s) 150, 602, 849, 979, 1096
EcoT14I CCWWGG 2 cut(s) 455, 1270
EcoT38I GRGCYC 1 cut(s) 816
ErhI CCWWGG 2 cut(s) 455, 1270
Esp3I CGTCTC 1 cut(s) 801
FaeI CATG 5 cut(s) 178, 648, 713, 822, 843
FalI AAGNNNNNCTT 2 cut(s) 705, 737
FaqI GGGAC 1 cut(s) 259
FatI CATG 5 cut(s) 174, 644, 709, 818, 839
Fnu4HI GCNGC 4 cut(s) 129, 996, 1008, 1246
FokI GGATG 6 cut(s) 295, 899, 918, 1210, 1316, 1376
FriOI GRGCYC 1 cut(s) 816
Fsp4HI GCNGC 4 cut(s) 129, 996, 1008, 1246
FspBI CTAG 3 cut(s) 410, 456, 1397
GluI GCNGC 4 cut(s) 129, 996, 1008, 1246
GsaI CCCAGC 2 cut(s) 498, 531
HaeIII GGCC 5 cut(s) 20, 216, 708, 1101, 1391
HapII CCGG 1 cut(s) 1361
Hin1II CATG 5 cut(s) 178, 648, 713, 822, 843
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HinfI GANTC 7 cut(s) 179, 620, 728, 976, 1051, 1289, 1378
HpaII CCGG 1 cut(s) 1361
HphI GGTGA 2 cut(s) 301, 1254
Hpy166II GTNNAC 3 cut(s) 395, 448, 1037
Hpy188I TCNGA 6 cut(s) 46, 282, 369, 570, 586, 1318
Hpy188III TCNNGA 2 cut(s) 677, 1197
Hpy8I GTNNAC 3 cut(s) 395, 448, 1037
Hpy99I CGWCG 1 cut(s) 537
HpyAV CCTTC 1 cut(s) 395
HpyCH4III ACNGT 5 cut(s) 694, 742, 1132, 1143, 1325
HpyCH4IV ACGT 1 cut(s) 1421
HpyF10VI GCNNNNNNNGC 3 cut(s) 474, 1004, 1251
HpyF3I CTNAG 4 cut(s) 45, 752, 761, 1249
HpySE526I ACGT 1 cut(s) 1421
Hsp92II CATG 5 cut(s) 178, 648, 713, 822, 843
KpnI GGTACC 1 cut(s) 1075
Kzo9I GATC 2 cut(s) 757, 1199
LmnI GCTCC 2 cut(s) 961, 1003
Lsp1109I GCAGC 4 cut(s) 140, 1007, 1019, 1232
LweI GCATC 3 cut(s) 273, 389, 556
MabI ACCWGGT 1 cut(s) 602
MaeI CTAG 3 cut(s) 410, 456, 1397
MaeII ACGT 1 cut(s) 1421
MaeIII GTNAC 5 cut(s) 425, 832, 845, 897, 1409
MalI GATC 2 cut(s) 759, 1201
MboI GATC 2 cut(s) 757, 1199
MboII GAAGA 7 cut(s) 281, 371, 648, 665, 819, 1319, 1387
MfeI CAATTG 1 cut(s) 951
MflI RGATCY 2 cut(s) 757, 1199
MhlI GDGCHC 1 cut(s) 816
MlsI TGGCCA 1 cut(s) 708
MluNI TGGCCA 1 cut(s) 708
MlyI GAGTC 2 cut(s) 1045, 1387
MmeI TCCRAC 2 cut(s) 260, 953
Mox20I TGGCCA 1 cut(s) 708
MroXI GAANNNNTTC 1 cut(s) 363
MscI TGGCCA 1 cut(s) 708
MseI TTAA 5 cut(s) 194, 627, 698, 747, 1404
Msp20I TGGCCA 1 cut(s) 708
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 1 cut(s) 1361
MspR9I CCNGG 6 cut(s) 152, 604, 851, 981, 1098, 1361
MunI CAATTG 1 cut(s) 951
Mva1269I GAATGC 2 cut(s) 1018, 1279
MvaI CCWGG 5 cut(s) 152, 604, 851, 981, 1098
MwoI GCNNNNNNNGC 3 cut(s) 474, 1004, 1251
NciI CCSGG 1 cut(s) 1361
NdeII GATC 2 cut(s) 757, 1199
NlaIII CATG 5 cut(s) 178, 648, 713, 822, 843
NlaIV GGNNCC 3 cut(s) 156, 1073, 1335
NmuCI GTSAC 2 cut(s) 832, 1409
NspI RCATGY 1 cut(s) 843
NspV TTCGAA 1 cut(s) 1373
PaqCI CACCTGC 1 cut(s) 277
PctI GAATGC 2 cut(s) 1018, 1279
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 5 cut(s) 179, 620, 728, 976, 1289
PflFI GACNNNGTC 1 cut(s) 380
PkrI GCNGC 4 cut(s) 130, 997, 1009, 1247
PleI GAGTC 2 cut(s) 1045, 1386
PpsI GAGTC 2 cut(s) 1045, 1386
PpuMI RGGWCCY 2 cut(s) 382, 765
Psp5II RGGWCCY 2 cut(s) 382, 765
Psp6I CCWGG 5 cut(s) 150, 602, 849, 979, 1096
PspEI GGTNACC 1 cut(s) 845
PspFI CCCAGC 2 cut(s) 494, 527
PspGI CCWGG 5 cut(s) 150, 602, 849, 979, 1096
PspN4I GGNNCC 3 cut(s) 156, 1073, 1335
PspPI GGNCC 6 cut(s) 99, 215, 382, 765, 1100, 1389
PspPPI RGGWCCY 2 cut(s) 382, 765
PstI CTGCAG 1 cut(s) 1009
PstNI CAGNNNCTG 1 cut(s) 209
PsuI RGATCY 2 cut(s) 757, 1199
PsyI GACNNNGTC 1 cut(s) 380
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 3 cut(s) 594, 1038, 1073
RsaNI GTAC 3 cut(s) 593, 1037, 1072
SaqAI TTAA 5 cut(s) 194, 627, 698, 747, 1404
SatI GCNGC 4 cut(s) 129, 996, 1008, 1246
Sau3AI GATC 2 cut(s) 757, 1199
Sau96I GGNCC 6 cut(s) 99, 215, 382, 765, 1100, 1389
SchI GAGTC 2 cut(s) 1045, 1387
ScrFI CCNGG 6 cut(s) 152, 604, 851, 981, 1098, 1361
SduI GDGCHC 1 cut(s) 816
SexAI ACCWGGT 1 cut(s) 602
SfaNI GCATC 3 cut(s) 273, 389, 556
SfcI CTRYAG 2 cut(s) 615, 1005
SfuI TTCGAA 1 cut(s) 1373
SinI GGWCC 3 cut(s) 99, 382, 765
SsiI CCGC 1 cut(s) 332
SspI AATATT 2 cut(s) 874, 1297
SspMI CTAG 3 cut(s) 410, 456, 1397
StyD4I CCNGG 6 cut(s) 150, 602, 849, 979, 1096, 1359
StyI CCWWGG 2 cut(s) 455, 1270
TaaI ACNGT 5 cut(s) 694, 742, 1132, 1143, 1325
TaiI ACGT 1 cut(s) 1424
TaqI TCGA 2 cut(s) 1283, 1373
TatI WGTACW 1 cut(s) 1036
TfiI GAWTC 5 cut(s) 179, 620, 728, 976, 1289
Tru1I TTAA 5 cut(s) 194, 627, 698, 747, 1404
Tru9I TTAA 5 cut(s) 194, 627, 698, 747, 1404
TscAI CASTG 3 cut(s) 193, 796, 1073
TseFI GTSAC 2 cut(s) 832, 1409
TseI GCWGC 4 cut(s) 128, 995, 1007, 1245
Tsp45I GTSAC 2 cut(s) 832, 1409
TspDTI ATGAA 4 cut(s) 81, 163, 726, 1320
TspGWI ACGGA 2 cut(s) 820, 959
TspRI CASTG 3 cut(s) 193, 796, 1073
Tth111I GACNNNGTC 1 cut(s) 380
VpaK11BI GGWCC 3 cut(s) 99, 382, 765
XapI RAATTY 5 cut(s) 145, 229, 342, 701, 1183
XceI RCATGY 1 cut(s) 843
XcmI CCANNNNNNNNNTGG 2 cut(s) 1084, 1143
XmaJI CCTAGG 1 cut(s) 455
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 3 cut(s) 410, 456, 1397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.