Prupe.7G047800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0029087
Physical Location & Seq
Forward (+)
8464103 .. 8466657
2555 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G047800.2

Sequence Viewer

Length: 276 bp
ATGGAAAGAATTTTAAGCAACACGAGCCTGAAACATGGTGCGCAAAATAGCGAGCTCGCTAAACAGAACACGCGAGTCCGAGCCCTGGAACGCCTCTCTCTCTCTCTCTCTCGTTTCCTTCAACATCGACTCTGCTCTTCTTCGAAGTTGTACTCAGTTCCATCTCCCAAGCAATGGCGACGAACAGGAACAAGAAGAAAGATAAACGATTCCGCTTCAATGGACATCACTGAAGAGCCCGTTTCAGATTTTCCTCAAGCAATTGACACCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.36

Weight (kDa)

10.26

Isoelectric Point (pI)

56.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029087)

Species Orthologous Gene IDs
prunus_persica Prupe.7G047800_v2.0.a1 Prupe.7G047800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 42
AccB7I CCANNNNNTGG 1 cut(s) 174
AccII CGCG 1 cut(s) 73
AciI CCGC 1 cut(s) 213
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 2 cut(s) 85, 174
AgsI TTSAA 2 cut(s) 122, 219
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw21I GWGCWC 1 cut(s) 57
ApoI RAATTY 1 cut(s) 9
AspLEI GCGC 1 cut(s) 43
AsuII TTCGAA 1 cut(s) 143
BanII GRGCYC 3 cut(s) 57, 85, 240
BauI CACGAG 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 57
BccI CCATC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 86
Bpu14I TTCGAA 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 174
Bse3DI GCAATG 1 cut(s) 179
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 84
BseLI CCNNNNNNNGG 2 cut(s) 85, 174
BseMI GCAATG 1 cut(s) 179
BseMII CTCAG 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 57
BslI CCNNNNNNNGG 2 cut(s) 85, 174
Bsp119I TTCGAA 1 cut(s) 143
Bsp1286I GDGCHC 3 cut(s) 57, 85, 240
BspACI CCGC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 167
BspFNI CGCG 1 cut(s) 73
BspQI GCTCTTC 2 cut(s) 142, 228
BspT104I TTCGAA 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 84
BssSI CACGAG 1 cut(s) 22
Bst2BI CACGAG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 86
Bst6I CTCTTC 2 cut(s) 142, 228
BstBI TTCGAA 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 53, 57
BstDEI CTNAG 1 cut(s) 154
BstFNI CGCG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 43
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstUI CGCG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 2 cut(s) 53, 57
CfoI GCGC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 151
CviAII CATG 1 cut(s) 35
CviJI RGCY 4 cut(s) 27, 55, 83, 238
CviKI_1 RGCY 4 cut(s) 27, 55, 83, 238
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 142, 228
EarI CTCTTC 2 cut(s) 142, 228
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 3 cut(s) 57, 85, 240
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 84
EcoT38I GRGCYC 3 cut(s) 57, 85, 240
FaeI CATG 1 cut(s) 38
FaiI YATR 2 cut(s) 36, 274
FatI CATG 1 cut(s) 34
FriOI GRGCYC 3 cut(s) 57, 85, 240
FspI TGCGCA 1 cut(s) 42
GlaI GCGC 1 cut(s) 42
HhaI GCGC 1 cut(s) 43
Hin1II CATG 1 cut(s) 38
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HinfI GANTC 3 cut(s) 75, 129, 209
Hpy188I TCNGA 2 cut(s) 80, 247
Hpy99I CGWCG 1 cut(s) 183
HpyAV CCTTC 1 cut(s) 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 1 cut(s) 154
Hsp92II CATG 1 cut(s) 38
HspAI GCGC 1 cut(s) 41
LguI GCTCTTC 2 cut(s) 142, 228
LpnPI CCDG 4 cut(s) 41, 71, 98, 171
MboII GAAGA 4 cut(s) 129, 132, 207, 245
MfeI CAATTG 1 cut(s) 261
MhlI GDGCHC 3 cut(s) 57, 85, 240
MluCI AATT 2 cut(s) 9, 261
MlyI GAGTC 2 cut(s) 84, 123
MnlI CCTC 2 cut(s) 104, 264
MseI TTAA 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 86
MunI CAATTG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 86
MvnI CGCG 1 cut(s) 73
MwoI GCNNNNNNNGC 1 cut(s) 24
NlaIII CATG 1 cut(s) 38
NsbI TGCGCA 1 cut(s) 42
NspV TTCGAA 1 cut(s) 143
PciSI GCTCTTC 2 cut(s) 142, 228
PfeI GAWTC 1 cut(s) 209
PflMI CCANNNNNTGG 1 cut(s) 174
PleI GAGTC 2 cut(s) 83, 123
PpsI GAGTC 2 cut(s) 83, 123
Psp124BI GAGCTC 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SacI GAGCTC 1 cut(s) 57
SapI GCTCTTC 2 cut(s) 142, 228
SaqAI TTAA 1 cut(s) 14
SchI GAGTC 2 cut(s) 84, 123
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 3 cut(s) 57, 85, 240
SetI ASST 2 cut(s) 57, 272
SfuI TTCGAA 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
Sse9I AATT 2 cut(s) 9, 261
SsiI CCGC 1 cut(s) 213
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 84
TaqI TCGA 2 cut(s) 127, 143
TasI AATT 2 cut(s) 9, 261
TatI WGTACW 1 cut(s) 150
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 235
TspRI CASTG 1 cut(s) 235
Van91I CCANNNNNTGG 1 cut(s) 174
XapI RAATTY 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.