Prupe.7G069600_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
10777239 .. 10777751
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G069600.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 246 bp
ATGAAGCTTTATCCCACATCGGAGAATTGTCTGTTCTACAAGTTCTTTATATCCTTGCGCTTAAGAGCCTTGTTTGTCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCATAAATCGAGAAATGGTCCAAATTTTTTTGCTCTTTTTTCTGCCAAATTTTTGTGCCCTTTGAAGTCTTCGATGGTTCGGTGGCTTCGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.53

Weight (kDa)

10.74

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0027788)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g13700
prunus_persica Prupe.7G069600_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 137
AcsI RAATTY 2 cut(s) 172, 197
AfiI CCNNNNNNNGG 1 cut(s) 139
AflII CTTAAG 1 cut(s) 61
AgsI TTSAA 1 cut(s) 214
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
AoxI GGCC 1 cut(s) 128
ApoI RAATTY 2 cut(s) 172, 197
AspLEI GCGC 2 cut(s) 60, 138
AspS9I GGNCC 2 cut(s) 129, 167
AvaII GGWCC 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 210
BccI CCATC 1 cut(s) 217
BfrI CTTAAG 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 129, 167
BmiI GGNNCC 1 cut(s) 131
BpiI GAAGAC 1 cut(s) 210
Bsc4I CCNNNNNNNGG 1 cut(s) 139
BseGI GGATG 2 cut(s) 89, 148
BseLI CCNNNNNNNGG 1 cut(s) 139
BseSI GKGCMC 1 cut(s) 209
BshFI GGCC 1 cut(s) 130
BslFI GGGAC 2 cut(s) 62, 100
BslI CCNNNNNNNGG 1 cut(s) 139
BsmFI GGGAC 2 cut(s) 62, 100
BsnI GGCC 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 209
BspANI GGCC 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 131
BspTI CTTAAG 1 cut(s) 61
BstAFI CTTAAG 1 cut(s) 61
BstENI CCTNNNNNAGG 1 cut(s) 137
BstF5I GGATG 2 cut(s) 89, 148
BstHHI GCGC 2 cut(s) 60, 138
BstSLI GKGCMC 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 210
BsuRI GGCC 1 cut(s) 130
BtsCI GGATG 2 cut(s) 89, 148
CfoI GCGC 2 cut(s) 60, 138
Cfr13I GGNCC 2 cut(s) 129, 167
CviAII CATG 1 cut(s) 126
CviJI RGCY 4 cut(s) 7, 68, 130, 235
CviKI_1 RGCY 4 cut(s) 7, 68, 130, 235
Eco47I GGWCC 1 cut(s) 167
EcoNI CCTNNNNNAGG 1 cut(s) 137
FaeI CATG 1 cut(s) 129
FaiI YATR 3 cut(s) 50, 127, 153
FaqI GGGAC 2 cut(s) 62, 100
FatI CATG 1 cut(s) 125
FokI GGATG 2 cut(s) 76, 155
FspI TGCGCA 1 cut(s) 137
GlaI GCGC 2 cut(s) 59, 137
HaeIII GGCC 1 cut(s) 130
HhaI GCGC 2 cut(s) 60, 138
Hin1II CATG 1 cut(s) 129
Hin6I GCGC 2 cut(s) 58, 136
HinP1I GCGC 2 cut(s) 58, 136
HindIII AAGCTT 1 cut(s) 5
Hpy188I TCNGA 2 cut(s) 22, 94
Hpy188III TCNNGA 1 cut(s) 159
HpyAV CCTTC 1 cut(s) 90
Hsp92II CATG 1 cut(s) 129
HspAI GCGC 2 cut(s) 58, 136
LpnPI CCDG 1 cut(s) 146
MboII GAAGA 2 cut(s) 129, 210
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 4 cut(s) 25, 99, 172, 197
MseI TTAA 1 cut(s) 62
MspCI CTTAAG 1 cut(s) 61
NlaIII CATG 1 cut(s) 129
NlaIV GGNNCC 1 cut(s) 131
NsbI TGCGCA 1 cut(s) 137
PcsI WCGNNNNNNNCGW 2 cut(s) 155, 235
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 2 cut(s) 129, 167
SaqAI TTAA 1 cut(s) 62
Sau96I GGNCC 2 cut(s) 129, 167
SduI GDGCHC 1 cut(s) 209
SetI ASST 1 cut(s) 9
SgeI CNNG 9 cut(s) 52, 67, 82, 96, 138, 145, 151, 160, 171
SinI GGWCC 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 4 cut(s) 25, 99, 172, 197
TaqI TCGA 2 cut(s) 158, 221
TasI AATT 4 cut(s) 25, 99, 172, 197
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 167
XagI CCTNNNNNAGG 1 cut(s) 137
XapI RAATTY 2 cut(s) 172, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.