Prupe.7G080000_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
11566044 .. 11568200
2157 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G080000.2_v2.0.a1.CDS.1

Sequence Viewer

Length: 300 bp
ATGCTCGTCCCTTCGGGGACATCCGATAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCATAAATCGAGAAATGGTCCAAATTTTTTTTGCCCTTTTTCCACCAAATTTCAAATGTTTTTTTTTGCGCTCTCCACGGTGTTTCCCACAATCTCTAGGGCCAAAGGCGTAGTTCAATTCTGTTGCAGAGGTTTGAGAAGCTATGAGCATTTTGCATTTGAAGTCTTCGATGGTTCGGTGACTGATTTTTTAGTATGGGATCTTGTGTTTCCAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.41

Weight (kDa)

9.3

Isoelectric Point (pI)

29.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024567)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 68
AclWI GGATC 1 cut(s) 288
AcsI RAATTY 2 cut(s) 103, 128
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 3 cut(s) 134, 197, 242
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
AlwI GGATC 1 cut(s) 288
AoxI GGCC 2 cut(s) 59, 180
ApoI RAATTY 2 cut(s) 103, 128
AspLEI GCGC 2 cut(s) 69, 151
AspS9I GGNCC 3 cut(s) 60, 98, 180
AsuHPI GGTGA 1 cut(s) 271
AvaII GGWCC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 238
BccI CCATC 1 cut(s) 245
BfaI CTAG 1 cut(s) 177
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 3 cut(s) 60, 98, 180
BmiI GGNNCC 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 238
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 2 cut(s) 20, 79
BseLI CCNNNNNNNGG 1 cut(s) 70
BshFI GGCC 2 cut(s) 61, 182
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 31
BsnI GGCC 2 cut(s) 61, 182
Bsp143I GATC 1 cut(s) 280
BspANI GGCC 2 cut(s) 61, 182
BspLI GGNNCC 1 cut(s) 62
BspPI GGATC 1 cut(s) 288
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 1 cut(s) 280
Bst4CI ACNGT 1 cut(s) 160
BstDSI CCRYGG 1 cut(s) 156
BstENI CCTNNNNNAGG 1 cut(s) 68
BstF5I GGATG 2 cut(s) 20, 79
BstHHI GCGC 2 cut(s) 69, 151
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstV2I GAAGAC 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 2 cut(s) 61, 182
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 2 cut(s) 20, 79
CfoI GCGC 2 cut(s) 69, 151
Cfr13I GGNCC 3 cut(s) 60, 98, 180
CviAII CATG 1 cut(s) 57
CviJI RGCY 3 cut(s) 61, 182, 222
CviKI_1 RGCY 3 cut(s) 61, 182, 222
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 98
EcoNI CCTNNNNNAGG 1 cut(s) 68
FaeI CATG 1 cut(s) 60
FaiI YATR 4 cut(s) 58, 84, 225, 277
FaqI GGGAC 1 cut(s) 31
FatI CATG 1 cut(s) 56
FokI GGATG 2 cut(s) 7, 86
FspBI CTAG 1 cut(s) 177
FspI TGCGCA 1 cut(s) 68
GlaI GCGC 2 cut(s) 68, 150
HaeIII GGCC 2 cut(s) 61, 182
HhaI GCGC 2 cut(s) 69, 151
Hin1II CATG 1 cut(s) 60
Hin6I GCGC 2 cut(s) 67, 149
HinP1I GCGC 2 cut(s) 67, 149
HphI GGTGA 1 cut(s) 271
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 1 cut(s) 90
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 2 cut(s) 207, 236
Hsp92II CATG 1 cut(s) 60
HspAI GCGC 2 cut(s) 67, 149
Kzo9I GATC 1 cut(s) 280
LpnPI CCDG 1 cut(s) 77
MaeI CTAG 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 259
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 2 cut(s) 60, 238
MflI RGATCY 1 cut(s) 280
MluCI AATT 5 cut(s) 30, 103, 128, 197, 294
MnlI CCTC 1 cut(s) 203
MseI TTAA 1 cut(s) 298
NdeII GATC 1 cut(s) 280
NlaIII CATG 1 cut(s) 60
NlaIV GGNNCC 1 cut(s) 62
NmuCI GTSAC 1 cut(s) 259
NsbI TGCGCA 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 3 cut(s) 60, 98, 180
PsuI RGATCY 1 cut(s) 280
SaqAI TTAA 1 cut(s) 298
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 3 cut(s) 60, 98, 180
SetI ASST 2 cut(s) 214, 224
SinI GGWCC 1 cut(s) 98
Sse9I AATT 5 cut(s) 30, 103, 128, 197, 294
SspMI CTAG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 89, 249
TasI AATT 5 cut(s) 30, 103, 128, 197, 294
Tru1I TTAA 1 cut(s) 298
Tru9I TTAA 1 cut(s) 298
TseFI GTSAC 1 cut(s) 259
Tsp45I GTSAC 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 98
XagI CCTNNNNNAGG 1 cut(s) 68
XapI RAATTY 2 cut(s) 103, 128
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.