Prupe.7G103800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0024417
Physical Location & Seq
Forward (+)
13336126 .. 13338302
2177 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G103800.1

Sequence Viewer

Length: 1413 bp
ATGGCTGATCAGCCAAGAGGTCGAGCAGTTGGTGCCATGGAGAACAGCTGGTGCCGCGCCGTGCCGGGCGGCACTGGCATAACGGTGCTGGGTTTTGACATCTCCTGCGCTCCGGATATGCTCAAATACCAAACTGCACTTCACAAGCTGCAAAATGCCCATCCAATCCTGAACTCCAGGCTCCATACCAACACCAAAACGAACACATTCTCCTTTGTCACATCCCCCACCCCTTTTGTCCAAATCAAAACATTCGACCTCTCATCAACTTTGGAAATCCTTGAAACCCTATCAAACCCAAGTAATAATTCAGTCTCTCCCTTCCACCTGATCCTTGAACATGAGCTAAACAAAAACACTTGGACTAAAACTACTACTACTACTTCTTCTTCATCAAGTGCTAGCACAAATGATCAAGACATGTTCTTTGGAACAATCTACACCCTCCCCAATGCCAAGTGGGTGGCCGTGATGAGGCTACACGTGTCAGCTTGTGACCACACCACAGCTGAGACTATGCTGAGAGAGTTGCTGGGGTACTTGATTGGTGGTACTGATGATGGAGAGGGGAGAGGGATAGAGAAGGAAATTGGTAGTAAAGGGGAGGTCAATTCGGGAATTGAGGACCTTGTTCCTTCTAGGATTGCTAAGAAGCCTTTTTGGGCTCGTGGGGTGGACATGCTTAGTTACTCTCTTAATTCCCTGAGGCTCACAAATTTGAAATTCAAAGACACCAAGTCAGCTAGATCTTCTCAGGTGGTAAGGTTTCGGATGAACCAAGAGGAAACTCAAAGGATTCTCGATGGTTGCAAGGCTAAAGGGATTAAATTATGTGGAGCATTGGTAGCTGCTGGATTGATGGCTGCAGATAAGTGCTCTAAACATCATCAAAAGAAGAAGTATGGGGTACTAACACTCATTGATTGCCGCTCCAATTTTGATCCAGCTCTTTCAATTCACCATTTTGGAAATTATCACTCCGTCATCCCCCACATCCACACCATCAAAGGAGGTGAAAACCTGTGGGAGCTTGCCAAGAAAACCTACACGGCCTTTGCAAGCTCTAAGGACAACGACAAACACTTCACAGACTTGGCTGCCCTGAGCTTCGTGATGTGCAAGGCCATTGAAAACCCGGCGTTGACCCCATCGTCTTCCTTGAGATCATCATTCATGACAGTGTTTGAAGACACAATCATTGATGATTACAATGACATGCAACGAGAGCTGGGAGTAGATGACTACATCGGCTGCGCTTCGGTGCACGGCATCGGCCCTTCCATTGCGATTTTCGACACGATAAGGAATGGAAGGCTGGATTGTGTTTGTGTGTATCCATCGCCATTGCACACGAGAGAGCAAATGCAGGAGCTGGTTGATAACATGAAGAAAATTCTTGTGGATTTGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

471

Amino Acids

51.96

Weight (kDa)

7.25

Isoelectric Point (pI)

29.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024417)

Species Orthologous Gene IDs
malus_domestica MD12G1027900.v1.1
prunus_persica Prupe.7G103800_v2.0.a1
pyrus_communis pycom12g02660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1150
AccB1I GGYRCC 2 cut(s) 32, 51
AccBSI CCGCTC 1 cut(s) 930
AccII CGCG 1 cut(s) 57
AccIII TCCGGA 1 cut(s) 112
AciI CCGC 3 cut(s) 55, 69, 928
AclWI GGATC 2 cut(s) 325, 935
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 3 cut(s) 715, 722, 1392
AcvI CACGTG 1 cut(s) 484
AfaI GTAC 3 cut(s) 539, 553, 909
AfiI CCNNNNNNNGG 1 cut(s) 474
AflIII ACRYGT 3 cut(s) 420, 481, 483
AgsI TTSAA 7 cut(s) 284, 338, 721, 727, 954, 1130, 1187
AhdI GACNNNNNGTC 1 cut(s) 736
AjnI CCWGG 1 cut(s) 176
AjuI GAANNNNNNNTTGG 4 cut(s) 123, 155, 292, 324
AloI GAACNNNNNNTCC 2 cut(s) 194, 226
Alw21I GWGCWC 2 cut(s) 878, 1266
Alw26I GTCTC 2 cut(s) 319, 506
Alw44I GTGCAC 1 cut(s) 1262
AlwI GGATC 2 cut(s) 325, 935
AlwNI CAGNNNCTG 1 cut(s) 1372
Aor13HI TCCGGA 1 cut(s) 112
AoxI GGCC 4 cut(s) 465, 1050, 1122, 1273
ApaLI GTGCAC 1 cut(s) 1262
ApeKI GCWGC 5 cut(s) 148, 848, 863, 1097, 1251
ApoI RAATTY 3 cut(s) 715, 722, 1392
ArsI GACNNNNNNTTYG 2 cut(s) 410, 442
Asp700I GAANNNNTTC 1 cut(s) 206
AspLEI GCGC 3 cut(s) 59, 110, 1256
AspS9I GGNCC 2 cut(s) 625, 1274
AsuC2I CCSGG 2 cut(s) 66, 1136
AsuHPI GGTGA 2 cut(s) 950, 1025
AsuNHI GCTAGC 1 cut(s) 401
AvaII GGWCC 1 cut(s) 625
AxyI CCTNAGG 1 cut(s) 704
BaeGI GKGCMC 1 cut(s) 1266
BanI GGYRCC 2 cut(s) 32, 51
BanII GRGCYC 1 cut(s) 667
BauI CACGAG 2 cut(s) 666, 1351
BbrPI CACGTG 1 cut(s) 484
BbsI GAAGAC 2 cut(s) 1146, 1194
Bbv12I GWGCWC 2 cut(s) 878, 1266
BbvI GCAGC 5 cut(s) 135, 835, 850, 1084, 1238
BccI CCATC 7 cut(s) 168, 554, 797, 853, 1010, 1156, 1345
BceAI ACGGC 4 cut(s) 44, 452, 1065, 1282
BciT130I CCWGG 1 cut(s) 178
BciVI GTATCC 1 cut(s) 1344
BclI TGATCA 2 cut(s) 7, 412
BcnI CCSGG 2 cut(s) 66, 1136
BcoDI GTCTC 2 cut(s) 319, 506
BfaI CTAG 3 cut(s) 402, 639, 744
BfmI CTRYAG 1 cut(s) 864
BfuI GTATCC 1 cut(s) 1344
BglII AGATCT 1 cut(s) 746
BisI GCNGC 8 cut(s) 55, 70, 149, 849, 864, 928, 1098, 1252
BlsI GCNGC 8 cut(s) 56, 71, 150, 850, 865, 929, 1099, 1253
Bme1390I CCNGG 3 cut(s) 66, 178, 1136
Bme18I GGWCC 1 cut(s) 625
BmeRI GACNNNNNGTC 1 cut(s) 736
BmgT120I GGNCC 2 cut(s) 625, 1274
BmiI GGNNCC 3 cut(s) 34, 53, 182
BmrFI CCNGG 3 cut(s) 66, 178, 1136
BmsI GCATC 1 cut(s) 1278
BmtI GCTAGC 1 cut(s) 405
BpiI GAAGAC 2 cut(s) 1146, 1194
BpmI CTGGAG 1 cut(s) 160
Bpu10I CCTNAGC 1 cut(s) 1103
BpuEI CTTGAG 1 cut(s) 1180
BpuMI CCSGG 2 cut(s) 66, 1136
BsaAI YACGTR 1 cut(s) 484
BsaJI CCNNGG 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 4 cut(s) 194, 224, 828, 858
Bsc4I CCNNNNNNNGG 1 cut(s) 474
Bse1I ACTGG 1 cut(s) 79
Bse21I CCTNAGG 1 cut(s) 704
Bse3DI GCAATG 2 cut(s) 1281, 1343
BseAI TCCGGA 1 cut(s) 112
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 5 cut(s) 160, 221, 777, 984, 993
BseLI CCNNNNNNNGG 1 cut(s) 474
BseMI GCAATG 2 cut(s) 1281, 1343
BseMII CTCAG 5 cut(s) 501, 512, 695, 767, 1094
BseNI ACTGG 1 cut(s) 79
BseSI GKGCMC 1 cut(s) 1266
BseXI GCAGC 5 cut(s) 135, 835, 850, 1084, 1238
BseYI CCCAGC 3 cut(s) 88, 532, 1228
BsgI GTGCAG 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 4 cut(s) 467, 1052, 1124, 1275
BshNI GGYRCC 2 cut(s) 32, 51
BsiHKAI GWGCWC 2 cut(s) 878, 1266
BsiSI CCGG 3 cut(s) 65, 113, 1136
BslI CCNNNNNNNGG 1 cut(s) 474
BsmAI GTCTC 2 cut(s) 319, 506
BsnI GGCC 4 cut(s) 467, 1052, 1124, 1275
Bsp1286I GDGCHC 3 cut(s) 667, 878, 1266
Bsp13I TCCGGA 1 cut(s) 112
Bsp143I GATC 6 cut(s) 7, 330, 412, 746, 940, 1163
Bsp19I CCATGG 1 cut(s) 36
BspACI CCGC 3 cut(s) 55, 69, 928
BspANI GGCC 4 cut(s) 467, 1052, 1124, 1275
BspCNI CTCAG 5 cut(s) 502, 513, 696, 766, 1095
BspEI TCCGGA 1 cut(s) 112
BspFNI CGCG 1 cut(s) 57
BspHI TCATGA 1 cut(s) 1173
BspLI GGNNCC 3 cut(s) 34, 53, 182
BspMAI CTGCAG 1 cut(s) 868
BspOI GCTAGC 1 cut(s) 405
BspPI GGATC 2 cut(s) 325, 935
BspT107I GGYRCC 2 cut(s) 32, 51
BsrBI CCGCTC 1 cut(s) 930
BsrDI GCAATG 2 cut(s) 1281, 1343
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 6 cut(s) 7, 330, 412, 746, 940, 1163
BssSI CACGAG 2 cut(s) 666, 1351
BssT1I CCWWGG 1 cut(s) 36
Bst2BI CACGAG 2 cut(s) 666, 1351
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 2 cut(s) 85, 1180
BstAPI GCANNNNNTGC 1 cut(s) 32
BstBAI YACGTR 1 cut(s) 484
BstC8I GCNNGC 3 cut(s) 403, 1032, 1060
BstDEI CTNAG 8 cut(s) 510, 521, 648, 683, 704, 753, 1065, 1103
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 5 cut(s) 160, 221, 777, 984, 993
BstFNI CGCG 1 cut(s) 57
BstHHI GCGC 3 cut(s) 59, 110, 1256
BstKTI GATC 6 cut(s) 10, 333, 415, 749, 943, 1166
BstMAI GTCTC 2 cut(s) 319, 506
BstMBI GATC 6 cut(s) 7, 330, 412, 746, 940, 1163
BstMWI GCNNNNNNNGC 5 cut(s) 32, 54, 75, 845, 1225
BstNI CCWGG 1 cut(s) 178
BstNSI RCATGY 3 cut(s) 424, 682, 1219
BstSCI CCNGG 3 cut(s) 64, 176, 1134
BstSFI CTRYAG 1 cut(s) 864
BstSLI GKGCMC 1 cut(s) 1266
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 5 cut(s) 135, 835, 850, 1084, 1238
BstV2I GAAGAC 2 cut(s) 1146, 1194
BstX2I RGATCY 1 cut(s) 746
BstXI CCANNNNNNTGG 1 cut(s) 463
BstYI RGATCY 1 cut(s) 746
Bsu36I CCTNAGG 1 cut(s) 704
BsuI GTATCC 1 cut(s) 1344
BsuRI GGCC 4 cut(s) 467, 1052, 1124, 1275
BtgI CCRYGG 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 1323
BtsCI GGATG 5 cut(s) 160, 221, 777, 984, 993
BtsIMutI CAGTG 2 cut(s) 72, 1185
Cac8I GCNNGC 3 cut(s) 403, 1032, 1060
CaiI CAGNNNCTG 1 cut(s) 1372
CciI TCATGA 1 cut(s) 1173
CfoI GCGC 3 cut(s) 59, 110, 1256
Cfr13I GGNCC 2 cut(s) 625, 1274
Csp6I GTAC 3 cut(s) 538, 552, 908
CspCI CAANNNNNGTGG 2 cut(s) 217, 252
CviAII CATG 7 cut(s) 37, 341, 421, 679, 1174, 1216, 1384
CviQI GTAC 3 cut(s) 538, 552, 908
DdeI CTNAG 8 cut(s) 510, 521, 648, 683, 704, 753, 1065, 1103
DpnI GATC 6 cut(s) 9, 332, 414, 748, 942, 1165
DpnII GATC 6 cut(s) 7, 330, 412, 746, 940, 1163
DrdI GACNNNNNNGTC 1 cut(s) 1150
DriI GACNNNNNGTC 1 cut(s) 736
DseDI GACNNNNNNGTC 1 cut(s) 1150
EaeI YGGCCR 1 cut(s) 465
Eam1105I GACNNNNNGTC 1 cut(s) 736
Eco130I CCWWGG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 667
Eco47I GGWCC 1 cut(s) 625
Eco72I CACGTG 1 cut(s) 484
Eco81I CCTNAGG 1 cut(s) 704
EcoO109I RGGNCCY 1 cut(s) 625
EcoRII CCWGG 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 667
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 7 cut(s) 40, 344, 424, 682, 1177, 1219, 1387
FatI CATG 7 cut(s) 36, 340, 420, 678, 1173, 1215, 1383
FbaI TGATCA 2 cut(s) 7, 412
Fnu4HI GCNGC 8 cut(s) 55, 70, 149, 849, 864, 928, 1098, 1252
FokI GGATG 5 cut(s) 147, 208, 784, 971, 980
FriOI GRGCYC 1 cut(s) 667
Fsp4HI GCNGC 8 cut(s) 55, 70, 149, 849, 864, 928, 1098, 1252
FspBI CTAG 3 cut(s) 402, 639, 744
GlaI GCGC 3 cut(s) 58, 109, 1255
GluI GCNGC 8 cut(s) 55, 70, 149, 849, 864, 928, 1098, 1252
GsaI CCCAGC 3 cut(s) 92, 536, 1232
GsuI CTGGAG 1 cut(s) 160
HaeIII GGCC 4 cut(s) 467, 1052, 1124, 1275
HapII CCGG 3 cut(s) 65, 113, 1136
HhaI GCGC 3 cut(s) 59, 110, 1256
Hin1II CATG 7 cut(s) 40, 344, 424, 682, 1177, 1219, 1387
Hin6I GCGC 3 cut(s) 57, 108, 1254
HinP1I GCGC 3 cut(s) 57, 108, 1254
HincII GTYRAC 1 cut(s) 1143
HindII GTYRAC 1 cut(s) 1143
HinfI GANTC 1 cut(s) 796
HpaII CCGG 3 cut(s) 65, 113, 1136
HphI GGTGA 2 cut(s) 950, 1025
Hpy166II GTNNAC 3 cut(s) 676, 1143, 1264
Hpy188I TCNGA 1 cut(s) 771
Hpy188III TCNNGA 7 cut(s) 113, 169, 416, 615, 800, 1111, 1174
Hpy8I GTNNAC 3 cut(s) 676, 1143, 1264
HpyAV CCTTC 5 cut(s) 331, 577, 645, 1287, 1305
HpyCH4III ACNGT 2 cut(s) 85, 1180
HpyCH4IV ACGT 1 cut(s) 483
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 54, 75, 845, 1225
HpyF3I CTNAG 8 cut(s) 510, 521, 648, 683, 704, 753, 1065, 1103
HpySE526I ACGT 1 cut(s) 483
Hsp92II CATG 7 cut(s) 40, 344, 424, 682, 1177, 1219, 1387
HspAI GCGC 3 cut(s) 57, 108, 1254
Kpn2I TCCGGA 1 cut(s) 112
Ksp22I TGATCA 2 cut(s) 7, 412
Kzo9I GATC 6 cut(s) 7, 330, 412, 746, 940, 1163
LmnI GCTCC 6 cut(s) 115, 186, 836, 935, 1027, 1369
Lsp1109I GCAGC 5 cut(s) 135, 835, 850, 1084, 1238
LweI GCATC 1 cut(s) 1278
MaeI CTAG 3 cut(s) 402, 639, 744
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 3 cut(s) 217, 494, 686
MalI GATC 6 cut(s) 9, 332, 414, 748, 942, 1165
MbiI CCGCTC 1 cut(s) 930
MboI GATC 6 cut(s) 7, 330, 412, 746, 940, 1163
MboII GAAGA 7 cut(s) 378, 381, 741, 907, 1146, 1199, 1399
MflI RGATCY 1 cut(s) 746
MhlI GDGCHC 3 cut(s) 667, 878, 1266
MroI TCCGGA 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 2 cut(s) 696, 825
MslI CAYNNNNRTG 2 cut(s) 83, 1178
MspA1I CMGCKG 2 cut(s) 48, 509
MspI CCGG 3 cut(s) 65, 113, 1136
MspR9I CCNGG 3 cut(s) 66, 178, 1136
MvaI CCWGG 1 cut(s) 178
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 5 cut(s) 32, 54, 75, 845, 1225
NciI CCSGG 2 cut(s) 66, 1136
NcoI CCATGG 1 cut(s) 36
NdeII GATC 6 cut(s) 7, 330, 412, 746, 940, 1163
NheI GCTAGC 1 cut(s) 401
NlaIII CATG 7 cut(s) 40, 344, 424, 682, 1177, 1219, 1387
NlaIV GGNNCC 3 cut(s) 34, 53, 182
NmuCI GTSAC 2 cut(s) 217, 494
NspI RCATGY 3 cut(s) 424, 682, 1219
PagI TCATGA 1 cut(s) 1173
PciI ACATGT 1 cut(s) 420
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 1 cut(s) 796
PkrI GCNGC 8 cut(s) 56, 71, 150, 850, 865, 929, 1099, 1253
PmaCI CACGTG 1 cut(s) 484
PmlI CACGTG 1 cut(s) 484
Ppu21I YACGTR 1 cut(s) 484
PpuMI RGGWCCY 1 cut(s) 625
PscI ACATGT 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 625
Psp6I CCWGG 1 cut(s) 176
PspCI CACGTG 1 cut(s) 484
PspFI CCCAGC 3 cut(s) 88, 532, 1228
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 3 cut(s) 34, 53, 182
PspPI GGNCC 2 cut(s) 625, 1274
PspPPI RGGWCCY 1 cut(s) 625
PstI CTGCAG 1 cut(s) 868
PstNI CAGNNNCTG 1 cut(s) 1372
PsuI RGATCY 1 cut(s) 746
PvuII CAGCTG 2 cut(s) 48, 509
RsaI GTAC 3 cut(s) 539, 553, 909
RsaNI GTAC 3 cut(s) 538, 552, 908
RseI CAYNNNNRTG 2 cut(s) 83, 1178
SaqAI TTAA 2 cut(s) 696, 825
SatI GCNGC 8 cut(s) 55, 70, 149, 849, 864, 928, 1098, 1252
Sau3AI GATC 6 cut(s) 7, 330, 412, 746, 940, 1163
Sau96I GGNCC 2 cut(s) 625, 1274
ScrFI CCNGG 3 cut(s) 66, 178, 1136
SduI GDGCHC 3 cut(s) 667, 878, 1266
SfaNI GCATC 1 cut(s) 1278
SfcI CTRYAG 1 cut(s) 864
SinI GGWCC 1 cut(s) 625
SmiMI CAYNNNNRTG 2 cut(s) 83, 1178
SmlI CTYRAG 1 cut(s) 1159
SmoI CTYRAG 1 cut(s) 1159
SsiI CCGC 3 cut(s) 55, 69, 928
SspMI CTAG 3 cut(s) 402, 639, 744
StyD4I CCNGG 3 cut(s) 64, 176, 1134
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 2 cut(s) 85, 1180
TaiI ACGT 1 cut(s) 486
TaqI TCGA 4 cut(s) 22, 255, 801, 1293
TauI GCSGC 3 cut(s) 57, 72, 930
TfiI GAWTC 1 cut(s) 796
Tru1I TTAA 2 cut(s) 696, 825
Tru9I TTAA 2 cut(s) 696, 825
TscAI CASTG 2 cut(s) 79, 1185
TseFI GTSAC 2 cut(s) 217, 494
TseI GCWGC 5 cut(s) 148, 848, 863, 1097, 1251
Tsp45I GTSAC 2 cut(s) 217, 494
TspDTI ATGAA 4 cut(s) 381, 788, 1162, 1400
TspGWI ACGGA 1 cut(s) 970
TspRI CASTG 2 cut(s) 79, 1185
VneI GTGCAC 1 cut(s) 1262
VpaK11BI GGWCC 1 cut(s) 625
XapI RAATTY 3 cut(s) 715, 722, 1392
XceI RCATGY 3 cut(s) 424, 682, 1219
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 3 cut(s) 402, 639, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.