Prupe.7G132600_v2.0.a1

ribosomal large subunit assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0029009
Physical Location & Seq
Reverse (-)
15134628 .. 15136201
1574 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G132600.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 384 bp
ATGCTCCAGATCCAAGTCCCAAGTCAAGTATCAACCACTGTGTGGCCACCGTTCCTCATCTCCTTTAATAAGCTCCCCATCAAAGCTCCAACCTTTTGCTCTCTTCTGCAAATAACACAAGGCTTACAGAGCTGCAATGGCAGAAGCCTCCGCTCCGATAGCCCCCCCAACTCTTTCTCAGATTATTCAACAAAAGTAATGGGGAAGAAGAGAAAGCACAGCGAGGCTGAGGCTGCGACTCGAGAAAAGGAGGAGGAGGTCGCTCCAGAGAGGCCTAAACGAACGCTTTCCGGTTGGAAGGAGAATAAGGATGACCAAGTAAACCAAACTGAATCAGCGACATTCTTTAGGGACAAAGAGAAGATGCCCACTGGAAGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

128

Amino Acids

14.37

Weight (kDa)

9.2

Isoelectric Point (pI)

72.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029009)

Species Orthologous Gene IDs
prunus_persica Prupe.6G064500_v2.0.a1 Prupe.7G132600_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 42
AccBSI CCGCTC 1 cut(s) 153
AciI CCGC 1 cut(s) 151
AclWI GGATC 1 cut(s) 4
AcoI YGGCCR 1 cut(s) 44
AdeI CACNNNGTG 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 1 cut(s) 189
AluBI AGCT 4 cut(s) 73, 86, 132, 378
AluI AGCT 4 cut(s) 73, 86, 132, 378
AlwI GGATC 1 cut(s) 4
Ama87I CYCGRG 1 cut(s) 240
AoxI GGCC 2 cut(s) 44, 272
ApeKI GCWGC 2 cut(s) 132, 233
Asp700I GAANNNNTTC 1 cut(s) 286
AvaI CYCGRG 1 cut(s) 240
BalI TGGCCA 1 cut(s) 46
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 119, 220
BccI CCATC 1 cut(s) 86
BisI GCNGC 2 cut(s) 133, 234
BlsI GCNGC 2 cut(s) 134, 235
BmeT110I CYCGRG 1 cut(s) 240
BmsI GCATC 1 cut(s) 354
BpmI CTGGAG 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 228
BsaWI WCCGGW 1 cut(s) 290
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 376
Bse3DI GCAATG 1 cut(s) 142
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 2 cut(s) 192, 219
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 2 cut(s) 266, 269
BseXI GCAGC 2 cut(s) 119, 220
BshFI GGCC 2 cut(s) 46, 274
BsiHKCI CYCGRG 1 cut(s) 240
BsiSI CCGG 1 cut(s) 291
BslFI GGGAC 2 cut(s) 2, 365
BslI CCNNNNNNNGG 1 cut(s) 42
BsmFI GGGAC 2 cut(s) 2, 365
BsnI GGCC 2 cut(s) 46, 274
BsoBI CYCGRG 1 cut(s) 240
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 1 cut(s) 151
BspANI GGCC 2 cut(s) 46, 274
BspCNI CTCAG 2 cut(s) 191, 220
BspPI GGATC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 142
BsrI ACTGG 1 cut(s) 376
BssMI GATC 1 cut(s) 9
Bst4CI ACNGT 2 cut(s) 40, 51
Bst6I CTCTTC 2 cut(s) 108, 203
BstDEI CTNAG 2 cut(s) 178, 228
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 4 cut(s) 129, 138, 159, 233
BstV1I GCAGC 2 cut(s) 119, 220
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BsuRI GGCC 2 cut(s) 46, 274
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 2 cut(s) 36, 369
DdeI CTNAG 2 cut(s) 178, 228
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
DraIII CACNNNGTG 1 cut(s) 42
EaeI YGGCCR 1 cut(s) 44
Eam1104I CTCTTC 2 cut(s) 108, 203
EarI CTCTTC 2 cut(s) 108, 203
Eco147I AGGCCT 1 cut(s) 274
Eco88I CYCGRG 1 cut(s) 240
FaqI GGGAC 2 cut(s) 2, 365
Fnu4HI GCNGC 2 cut(s) 133, 234
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 2 cut(s) 133, 234
GluI GCNGC 2 cut(s) 133, 234
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 2 cut(s) 46, 274
HapII CCGG 1 cut(s) 291
HindIII AAGCTT 1 cut(s) 376
HinfI GANTC 2 cut(s) 238, 332
HpaII CCGG 1 cut(s) 291
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 2 cut(s) 157, 181
Hpy188III TCNNGA 3 cut(s) 7, 242, 266
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 2 cut(s) 40, 51
HpyCH4V TGCA 2 cut(s) 109, 135
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 138, 159, 233
HpyF3I CTNAG 2 cut(s) 178, 228
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 5 cut(s) 9, 78, 91, 158, 268
LpnPI CCDG 4 cut(s) 20, 279, 304, 357
Lsp1109I GCAGC 2 cut(s) 119, 220
LweI GCATC 1 cut(s) 354
MalI GATC 1 cut(s) 11
MbiI CCGCTC 1 cut(s) 153
MboI GATC 1 cut(s) 9
MboII GAAGA 4 cut(s) 95, 217, 220, 373
MflI RGATCY 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 46
MluNI TGGCCA 1 cut(s) 46
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 2 cut(s) 113, 275
MnlI CCTC 8 cut(s) 65, 158, 217, 223, 244, 247, 250, 264
Mox20I TGGCCA 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 286
MscI TGGCCA 1 cut(s) 46
MseI TTAA 1 cut(s) 66
Msp20I TGGCCA 1 cut(s) 46
MspI CCGG 1 cut(s) 291
MwoI GCNNNNNNNGC 4 cut(s) 129, 138, 159, 233
NdeII GATC 1 cut(s) 9
PaeR7I CTCGAG 1 cut(s) 240
PceI AGGCCT 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 332
PflMI CCANNNNNTGG 1 cut(s) 42
PkrI GCNGC 2 cut(s) 134, 235
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
PsuI RGATCY 1 cut(s) 9
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 133, 234
Sau3AI GATC 1 cut(s) 9
SchI GAGTC 1 cut(s) 232
SetI ASST 6 cut(s) 75, 88, 95, 134, 261, 380
SfaNI GCATC 1 cut(s) 354
Sfr274I CTCGAG 1 cut(s) 240
SlaI CTCGAG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
SseBI AGGCCT 1 cut(s) 274
SsiI CCGC 1 cut(s) 151
StuI AGGCCT 1 cut(s) 274
TaaI ACNGT 2 cut(s) 40, 51
TaqI TCGA 1 cut(s) 241
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 2 cut(s) 43, 376
TseI GCWGC 2 cut(s) 132, 233
TspRI CASTG 2 cut(s) 43, 376
Van91I CCANNNNNTGG 1 cut(s) 42
XhoI CTCGAG 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.