Prupe.7G147400_v2.0.a1

LYK5-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
16024074 .. 16025970
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G147400.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1017 bp
ATGGCAACGGGTGGAAACGGAAACGGCTTTGGCTTTTTGCAAGGATCAGTATTAAAGAAAAGGAAGAAATCTTTCAAGGTCAGGAATTATGATCCTCATCAGGCCACTCAGGACAAGTTACTTTCTGGGATTTCACAGTATGTAGGGAAGGCAATTATGTATGACAAAGAAATGATTATGGAGGCAACCAATGACCTTGATGAACTCTGTAAAATTGGGGATTCAATGTACAAAGCCACCATGTATGGGGAGGTTTTAGCCATAAAGAGAACCAATATAGATGTCAAAGAAAAGCTGAGTATCCTGCAGAAGGTAAACCATGTGAATCTGGTGAATTTGATGGGAATTTCGTATGATGCAGATGGGGATCGCTTCTTGGTTTATGAAAATGCTGAGAATGGATCACTTGAAAATTGGTTGTTCCCTGACTCTGAAGCTTCTTCAGACTCTCTGGCCTTCCTCTCTTGGAGTCAGAGAATTCACATAGCACTTGACTTTGCCAACGGCCTGCACTACATGCATGATCACACTCAACAAAGCATTGTTCACTGGGATGTCAGAGAAAGAAATATCCTCGTAGACTCCGACTTCAAGGCCAAGTTTGCAAATTTCTCAACAGCTAGACCTGTTACAAACTCATCGATGCCAAAAGTGGATGTTTTCGCATTTGGGGTTTTACTGTTGGAGTTGCTTTCAGGAAAGAGGGCCATGGAAACAAAAGAAAATGGTGAAGTGGTTATGTTGTACAAAGATTTAAGGGAGGTGTTGAAGGTTGAAGAGAAGAGCGTTGAAAGGTTACAAAAATGGATAGATCCAAAATTGGAGAACTGTTATCCTCTTGATGGTGCGCTGAGTTTGGCAGCCCTTGCCACGACATGCACACAAGAAAATGCTCAGGCAAGGCCAAGTTTGGCTGAAGTCGTTTTGAACCTCTCTGTACTAGCTCAGTCATCCCCTAAGACAATGCATAAATTCCAGTCGAAACTCGCTGATTTAGGCTGGGAGAAAGTACTATGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

339

Amino Acids

37.99

Weight (kDa)

6.1

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028423)

Species Orthologous Gene IDs
malus_domestica MD15G1270800.v1.1
prunus_persica Prupe.7G147400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 579
AclWI GGATC 5 cut(s) 52, 86, 375, 409, 806
AcsI RAATTY 5 cut(s) 334, 345, 477, 607, 971
AcuI CTGAAG 3 cut(s) 426, 453, 936
AfaI GTAC 4 cut(s) 230, 746, 939, 1011
AfiI CCNNNNNNNGG 3 cut(s) 246, 310, 842
AgsI TTSAA 8 cut(s) 76, 225, 410, 592, 769, 776, 791, 928
AluBI AGCT 4 cut(s) 295, 437, 620, 944
AluI AGCT 4 cut(s) 295, 437, 620, 944
AlwI GGATC 5 cut(s) 52, 86, 375, 409, 806
AoxI GGCC 6 cut(s) 102, 453, 505, 594, 705, 902
ApeKI GCWGC 1 cut(s) 860
ApoI RAATTY 5 cut(s) 334, 345, 477, 607, 971
Asp700I GAANNNNTTC 1 cut(s) 71
AspLEI GCGC 1 cut(s) 850
AspS9I GGNCC 1 cut(s) 705
AsuHPI GGTGA 2 cut(s) 343, 740
BbvI GCAGC 1 cut(s) 872
BccI CCATC 3 cut(s) 334, 356, 836
BceAI ACGGC 2 cut(s) 40, 520
BciVI GTATCC 1 cut(s) 311
BclI TGATCA 1 cut(s) 523
BfaI CTAG 2 cut(s) 621, 941
BfmI CTRYAG 1 cut(s) 305
BfuI GTATCC 1 cut(s) 311
BisI GCNGC 1 cut(s) 861
BlsI GCNGC 1 cut(s) 862
BmcAI AGTACT 1 cut(s) 1011
BmgT120I GGNCC 1 cut(s) 705
BmrI ACTGGG 1 cut(s) 559
BmsI GCATC 2 cut(s) 346, 633
BmuI ACTGGG 1 cut(s) 559
Bpu10I CCTNAGC 1 cut(s) 894
Bsa29I ATCGAT 1 cut(s) 641
BsaBI GATNNNNATC 2 cut(s) 96, 366
BsaJI CCNNGG 1 cut(s) 708
Bsc4I CCNNNNNNNGG 3 cut(s) 246, 310, 842
Bse1I ACTGG 2 cut(s) 554, 976
Bse8I GATNNNNATC 2 cut(s) 96, 366
BseCI ATCGAT 1 cut(s) 641
BseDI CCNNGG 1 cut(s) 708
BseGI GGATG 3 cut(s) 559, 661, 950
BseJI GATNNNNATC 2 cut(s) 96, 366
BseLI CCNNNNNNNGG 3 cut(s) 246, 310, 842
BseMII CTCAG 6 cut(s) 122, 287, 384, 842, 908, 959
BseNI ACTGG 2 cut(s) 554, 976
BseXI GCAGC 1 cut(s) 872
BseYI CCCAGC 1 cut(s) 999
BsgI GTGCAG 1 cut(s) 494
BshFI GGCC 6 cut(s) 104, 455, 507, 596, 707, 904
BshVI ATCGAT 1 cut(s) 641
BslI CCNNNNNNNGG 3 cut(s) 246, 310, 842
BsnI GGCC 6 cut(s) 104, 455, 507, 596, 707, 904
Bsp1407I TGTACA 2 cut(s) 228, 744
Bsp143I GATC 6 cut(s) 44, 91, 367, 401, 523, 811
Bsp19I CCATGG 1 cut(s) 708
BspANI GGCC 6 cut(s) 104, 455, 507, 596, 707, 904
BspCNI CTCAG 6 cut(s) 121, 288, 385, 843, 907, 958
BspDI ATCGAT 1 cut(s) 641
BspMAI CTGCAG 1 cut(s) 309
BspPI GGATC 5 cut(s) 52, 86, 375, 409, 806
BspQI GCTCTTC 1 cut(s) 776
BsrGI TGTACA 2 cut(s) 228, 744
BsrI ACTGG 2 cut(s) 554, 976
BssECI CCNNGG 1 cut(s) 708
BssMI GATC 6 cut(s) 44, 91, 367, 401, 523, 811
BssT1I CCWWGG 1 cut(s) 708
Bst4CI ACNGT 3 cut(s) 138, 681, 830
Bst6I CTCTTC 2 cut(s) 771, 776
BstAPI GCANNNNNTGC 2 cut(s) 517, 866
BstAUI TGTACA 2 cut(s) 228, 744
BstC8I GCNNGC 1 cut(s) 509
BstDEI CTNAG 7 cut(s) 108, 296, 393, 851, 894, 945, 957
BstDSI CCRYGG 1 cut(s) 708
BstENI CCTNNNNNAGG 1 cut(s) 308
BstF5I GGATG 3 cut(s) 559, 661, 950
BstHHI GCGC 1 cut(s) 850
BstKTI GATC 6 cut(s) 47, 94, 370, 404, 526, 814
BstMBI GATC 6 cut(s) 44, 91, 367, 401, 523, 811
BstMWI GCNNNNNNNGC 3 cut(s) 517, 602, 866
BstNSI RCATGY 2 cut(s) 520, 879
BstSFI CTRYAG 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 872
BstX2I RGATCY 1 cut(s) 811
BstYI RGATCY 1 cut(s) 811
Bsu15I ATCGAT 1 cut(s) 641
BsuI GTATCC 1 cut(s) 311
BsuRI GGCC 6 cut(s) 104, 455, 507, 596, 707, 904
BsuTUI ATCGAT 1 cut(s) 641
BtgI CCRYGG 1 cut(s) 708
BtsCI GGATG 3 cut(s) 559, 661, 950
BtsIMutI CAGTG 1 cut(s) 547
Cac8I GCNNGC 1 cut(s) 509
CfoI GCGC 1 cut(s) 850
Cfr13I GGNCC 1 cut(s) 705
ClaI ATCGAT 1 cut(s) 641
Csp6I GTAC 4 cut(s) 229, 745, 938, 1010
CviAII CATG 6 cut(s) 241, 320, 517, 521, 709, 876
CviQI GTAC 4 cut(s) 229, 745, 938, 1010
DdeI CTNAG 7 cut(s) 108, 296, 393, 851, 894, 945, 957
DpnI GATC 6 cut(s) 46, 93, 369, 403, 525, 813
DpnII GATC 6 cut(s) 44, 91, 367, 401, 523, 811
Eam1104I CTCTTC 2 cut(s) 771, 776
EarI CTCTTC 2 cut(s) 771, 776
Eco130I CCWWGG 1 cut(s) 708
Eco57I CTGAAG 3 cut(s) 426, 453, 936
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 477
EcoT14I CCWWGG 1 cut(s) 708
EcoT22I ATGCAT 2 cut(s) 522, 969
ErhI CCWWGG 1 cut(s) 708
FaeI CATG 6 cut(s) 244, 323, 520, 524, 712, 879
FatI CATG 6 cut(s) 240, 319, 516, 520, 708, 875
FbaI TGATCA 1 cut(s) 523
FblI GTMKAC 1 cut(s) 579
Fnu4HI GCNGC 1 cut(s) 861
FokI GGATG 3 cut(s) 566, 668, 937
Fsp4HI GCNGC 1 cut(s) 861
FspBI CTAG 2 cut(s) 621, 941
GlaI GCGC 1 cut(s) 849
GluI GCNGC 1 cut(s) 861
GsaI CCCAGC 1 cut(s) 1003
HaeIII GGCC 6 cut(s) 104, 455, 507, 596, 707, 904
HhaI GCGC 1 cut(s) 850
Hin1II CATG 6 cut(s) 244, 323, 520, 524, 712, 879
Hin6I GCGC 1 cut(s) 848
HinP1I GCGC 1 cut(s) 848
HindIII AAGCTT 1 cut(s) 435
HinfI GANTC 6 cut(s) 221, 325, 428, 446, 469, 581
HphI GGTGA 2 cut(s) 343, 740
Hpy166II GTNNAC 3 cut(s) 316, 547, 580
Hpy188I TCNGA 5 cut(s) 433, 445, 474, 560, 586
Hpy188III TCNNGA 4 cut(s) 82, 110, 696, 839
Hpy8I GTNNAC 3 cut(s) 316, 547, 580
HpyAV CCTTC 4 cut(s) 142, 304, 466, 763
HpyCH4III ACNGT 3 cut(s) 138, 681, 830
HpyCH4V TGCA 8 cut(s) 40, 307, 359, 511, 520, 605, 879, 967
HpyF10VI GCNNNNNNNGC 3 cut(s) 517, 602, 866
HpyF3I CTNAG 7 cut(s) 108, 296, 393, 851, 894, 945, 957
Hsp92II CATG 6 cut(s) 244, 323, 520, 524, 712, 879
HspAI GCGC 1 cut(s) 848
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 6 cut(s) 44, 91, 367, 401, 523, 811
LguI GCTCTTC 1 cut(s) 776
Lsp1109I GCAGC 1 cut(s) 872
LweI GCATC 2 cut(s) 346, 633
MaeI CTAG 2 cut(s) 621, 941
MaeIII GTNAC 3 cut(s) 117, 628, 795
MalI GATC 6 cut(s) 46, 93, 369, 403, 525, 813
MboI GATC 6 cut(s) 44, 91, 367, 401, 523, 811
MboII GAAGA 4 cut(s) 76, 432, 788, 793
MflI RGATCY 1 cut(s) 811
MlyI GAGTC 4 cut(s) 422, 440, 478, 575
MmeI TCCRAC 2 cut(s) 609, 663
MnlI CCTC 9 cut(s) 105, 175, 244, 470, 584, 696, 754, 846, 941
Mph1103I ATGCAT 2 cut(s) 522, 969
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 2 cut(s) 53, 755
MslI CAYNNNNRTG 1 cut(s) 552
MwoI GCNNNNNNNGC 3 cut(s) 517, 602, 866
NcoI CCATGG 1 cut(s) 708
NdeII GATC 6 cut(s) 44, 91, 367, 401, 523, 811
NlaIII CATG 6 cut(s) 244, 323, 520, 524, 712, 879
NsiI ATGCAT 2 cut(s) 522, 969
NspI RCATGY 2 cut(s) 520, 879
PciSI GCTCTTC 1 cut(s) 776
PcsI WCGNNNNNNNCGW 1 cut(s) 582
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 221, 325
PkrI GCNGC 1 cut(s) 862
PleI GAGTC 4 cut(s) 422, 440, 477, 575
PpsI GAGTC 4 cut(s) 422, 440, 477, 575
PspFI CCCAGC 1 cut(s) 999
PspPI GGNCC 1 cut(s) 705
PstI CTGCAG 1 cut(s) 309
PsuI RGATCY 1 cut(s) 811
RsaI GTAC 4 cut(s) 230, 746, 939, 1011
RsaNI GTAC 4 cut(s) 229, 745, 938, 1010
RseI CAYNNNNRTG 1 cut(s) 552
SapI GCTCTTC 1 cut(s) 776
SaqAI TTAA 2 cut(s) 53, 755
SatI GCNGC 1 cut(s) 861
Sau3AI GATC 6 cut(s) 44, 91, 367, 401, 523, 811
Sau96I GGNCC 1 cut(s) 705
ScaI AGTACT 1 cut(s) 1011
SchI GAGTC 4 cut(s) 422, 440, 478, 575
SfaNI GCATC 2 cut(s) 346, 633
SfcI CTRYAG 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 552
SspMI CTAG 2 cut(s) 621, 941
StyI CCWWGG 1 cut(s) 708
TaaI ACNGT 3 cut(s) 138, 681, 830
TaqI TCGA 2 cut(s) 641, 980
TatI WGTACW 4 cut(s) 228, 744, 937, 1009
TfiI GAWTC 2 cut(s) 221, 325
Tru1I TTAA 2 cut(s) 53, 755
Tru9I TTAA 2 cut(s) 53, 755
TscAI CASTG 1 cut(s) 554
TseI GCWGC 1 cut(s) 860
TspDTI ATGAA 2 cut(s) 216, 399
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 1 cut(s) 554
XagI CCTNNNNNAGG 1 cut(s) 308
XapI RAATTY 5 cut(s) 334, 345, 477, 607, 971
XceI RCATGY 2 cut(s) 520, 879
XmiI GTMKAC 1 cut(s) 579
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 2 cut(s) 621, 941
ZrmI AGTACT 1 cut(s) 1011
Zsp2I ATGCAT 2 cut(s) 522, 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.