Prupe.7G179700_v2.0.a1

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0029097
Physical Location & Seq
Reverse (-)
17649496 .. 17652226
2731 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G179700.1

Sequence Viewer

Length: 1359 bp
ATGGAATTGGATCGCTACCGATCGTTGAAGCGGATTCAAGAGGAATTTTATCAGATGCAATCCAATCCCTCCGACGATTTCAAGTGCTGCCTGCTCGAGCGGAACCCATATGAATGGCAATTTGCAATCAGAGGCCCTAGTGGAACTGAATTAGAGGGTGGGATTTATCATGGGTGGATCCAGTTTCCGGAGGAGTACCCATCGAAGCCTCCTTCATTCACGCTTTTGACGGAAAATGGTTGCTTCAAAACCCAAAACAAGACCGGGATAAGGCGATTGAATTATTGGCAGCCATCATGGAGGGTGCGAGATGGTTTACTTGCACTTATTGATGAAATGCATACCTACCCAGATGGTGAATTGGATTCAGTAGAATACAATAGGGAAGAAAGGCGTGATCTGGCCATCAAATCTCGTGCGGCAGCCCCAAAATATGGCACTGCTGAACGTCAGAAGGTAATTGATGAGATTCATGAATATCTGCTAAGCAAGTCACCACCTATTCCTGTTCCTCAAGTCCGACGGACGAGAAACGTTCCGTGTCAGGAAGAGGTGGTTGTGGATCGAGTCGGATCAACGCAGATGGAATTGGATCGGAGTGTGATAGTGGAGGACAAGTCCAACATACAGAACTCAGGGGAGAAGCGGATTCTAGAGGAGTATAATGAGATTGAATCCAATCCCTCCAACGATTTCAAGTGCCTCAAGCTCGATTGGAACCCATATGAATGGCAATTTGCAATCAGAGGCCCTAGTGGAACTGAATTCGAGGGTGGGATTTATCATGGGGTGGTCCAGTTTTCGGAGGGATACCCATCGAAGCCTCCTTCAATCATGTTTTTGACGAAAAATGGTCGCTTCAAAACCCAAACCGACATCAGCGCAAGGCTATTATTGAACTGGCAGTCACCAAGGATTGTGCGAAATGCTTTACTTGCACTTATTGAGGAAATGCCCACCTATCCAGATGGTGATGGTGAATTGGATTCAGTAAAATACAATAAGAATATAATGCGTGTCCTGGCCATCAATTCTCGTATAGCAGCCCCAAAATATGGCACTTCTGAACGTCAGAAGGTAATTGATGCGATTCATGAATATATGCTAAGCAAGGCACCACCTGTTCCTCAACTCCAACTGAGCAGCCTCTCCCAAAATGGAGCCGAAAGAAAGCACGGCAGAGGCACAGGCTCTGTCTTCAACAACATTATTGGGAATAAAGTTCATGCTACCAACGGCAGGGTACGATTTTTGCGTTCTATGAATGGGCCCCCCGAACCCATGATTGCAAAAATATTTGGTTTGGTTCTCTTGTTTTCGTCAATACTTTATGGGATTTTGTCCGGGCGAAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UQ_con

Protein Analysis

453

Amino Acids

51.81

Weight (kDa)

8.4

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029097)

Species Orthologous Gene IDs
prunus_persica Prupe.7G179700_v2.0.a1 Prupe.7G179900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1114
AccB7I CCANNNNNTGG 2 cut(s) 434, 1055
AccBSI CCGCTC 1 cut(s) 100
AccIII TCCGGA 1 cut(s) 187
AciI CCGC 4 cut(s) 31, 100, 419, 646
AclI AACGTT 1 cut(s) 534
AclWI GGATC 6 cut(s) 18, 172, 185, 570, 580, 600
AcoI YGGCCR 2 cut(s) 402, 1023
AcsI RAATTY 2 cut(s) 44, 764
AfaI GTAC 2 cut(s) 197, 1245
AfiI CCNNNNNNNGG 7 cut(s) 187, 270, 434, 802, 1055, 1239, 1350
AjnI CCWGG 1 cut(s) 1020
AluBI AGCT 1 cut(s) 709
AluI AGCT 1 cut(s) 709
AlwI GGATC 6 cut(s) 18, 172, 185, 570, 580, 600
AlwNI CAGNNNCTG 1 cut(s) 1193
Ama87I CYCGRG 1 cut(s) 95
Aor13HI TCCGGA 1 cut(s) 187
AoxI GGCC 5 cut(s) 133, 402, 748, 1023, 1268
ApaI GGGCCC 1 cut(s) 1272
ApeKI GCWGC 5 cut(s) 87, 289, 422, 1043, 1143
ApoI RAATTY 2 cut(s) 44, 764
AspLEI GCGC 1 cut(s) 884
AspS9I GGNCC 5 cut(s) 134, 749, 793, 1268, 1269
AsuC2I CCSGG 2 cut(s) 265, 1345
AsuHPI GGTGA 5 cut(s) 368, 486, 900, 983, 989
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 1 cut(s) 793
BaeGI GKGCMC 1 cut(s) 1272
BalI TGGCCA 2 cut(s) 404, 1025
BamHI GGATCC 1 cut(s) 177
BanI GGYRCC 1 cut(s) 1114
BanII GRGCYC 1 cut(s) 1272
BauI CACGAG 1 cut(s) 414
BbsI GAAGAC 1 cut(s) 1189
BbvI GCAGC 5 cut(s) 74, 301, 434, 1055, 1155
BceAI ACGGC 2 cut(s) 1192, 1252
BciT130I CCWGG 1 cut(s) 1022
BciVI GTATCC 1 cut(s) 803
BcnI CCSGG 2 cut(s) 265, 1345
BfaI CTAG 3 cut(s) 138, 653, 753
BfuI GTATCC 1 cut(s) 803
BisI GCNGC 6 cut(s) 88, 290, 420, 423, 1044, 1144
BlpI GCTNAGC 2 cut(s) 485, 1106
BlsI GCNGC 6 cut(s) 89, 291, 421, 424, 1045, 1145
Bme1390I CCNGG 3 cut(s) 265, 1022, 1345
Bme18I GGWCC 1 cut(s) 793
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 5 cut(s) 134, 749, 793, 1268, 1269
BmiI GGNNCC 7 cut(s) 104, 179, 719, 1116, 1162, 1270, 1271
BmrFI CCNGG 3 cut(s) 265, 1022, 1345
BmsI GCATC 2 cut(s) 45, 1075
BpiI GAAGAC 1 cut(s) 1189
Bpu1102I GCTNAGC 2 cut(s) 485, 1106
BpuEI CTTGAG 2 cut(s) 498, 689
BpuMI CCSGG 2 cut(s) 265, 1345
BsaBI GATNNNNATC 1 cut(s) 814
BsaJI CCNNGG 1 cut(s) 911
BsaWI WCCGGW 1 cut(s) 187
BsaXI ACNNNNNCTCC 2 cut(s) 602, 632
Bsc4I CCNNNNNNNGG 7 cut(s) 187, 270, 434, 802, 1055, 1239, 1350
Bse1I ACTGG 3 cut(s) 181, 796, 905
Bse8I GATNNNNATC 1 cut(s) 814
BseAI TCCGGA 1 cut(s) 187
BseBI CCWGG 1 cut(s) 1022
BseDI CCNNGG 1 cut(s) 911
BseJI GATNNNNATC 1 cut(s) 814
BseLI CCNNNNNNNGG 7 cut(s) 187, 270, 434, 802, 1055, 1239, 1350
BseMII CTCAG 2 cut(s) 648, 1130
BseNI ACTGG 3 cut(s) 181, 796, 905
BseRI GAGGAG 2 cut(s) 206, 671
BseSI GKGCMC 1 cut(s) 1272
BseXI GCAGC 5 cut(s) 74, 301, 434, 1055, 1155
Bsh1285I CGRYCG 1 cut(s) 23
BshFI GGCC 5 cut(s) 135, 404, 750, 1025, 1270
BshNI GGYRCC 1 cut(s) 1114
BsiEI CGRYCG 1 cut(s) 23
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 3 cut(s) 188, 264, 1344
BslI CCNNNNNNNGG 7 cut(s) 187, 270, 434, 802, 1055, 1239, 1350
BsnI GGCC 5 cut(s) 135, 404, 750, 1025, 1270
BsoBI CYCGRG 1 cut(s) 95
Bsp120I GGGCCC 1 cut(s) 1268
Bsp1286I GDGCHC 1 cut(s) 1272
Bsp13I TCCGGA 1 cut(s) 187
Bsp143I GATC 7 cut(s) 10, 20, 177, 397, 562, 572, 592
Bsp1720I GCTNAGC 2 cut(s) 485, 1106
BspACI CCGC 4 cut(s) 31, 100, 419, 646
BspANI GGCC 5 cut(s) 135, 404, 750, 1025, 1270
BspCNI CTCAG 2 cut(s) 647, 1131
BspEI TCCGGA 1 cut(s) 187
BspHI TCATGA 2 cut(s) 472, 1093
BspLI GGNNCC 7 cut(s) 104, 179, 719, 1116, 1162, 1270, 1271
BspPI GGATC 6 cut(s) 18, 172, 185, 570, 580, 600
BspT107I GGYRCC 1 cut(s) 1114
BsrBI CCGCTC 1 cut(s) 100
BsrI ACTGG 3 cut(s) 181, 796, 905
BssECI CCNNGG 1 cut(s) 911
BssMI GATC 7 cut(s) 10, 20, 177, 397, 562, 572, 592
BssSI CACGAG 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 911
Bst2BI CACGAG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 1022
Bst6I CTCTTC 1 cut(s) 543
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 4 cut(s) 485, 634, 1106, 1139
BstHHI GCGC 1 cut(s) 884
BstKTI GATC 7 cut(s) 13, 23, 180, 400, 565, 575, 595
BstMBI GATC 7 cut(s) 10, 20, 177, 397, 562, 572, 592
BstMCI CGRYCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 1 cut(s) 935
BstNI CCWGG 1 cut(s) 1022
BstSCI CCNGG 3 cut(s) 263, 1020, 1343
BstSLI GKGCMC 1 cut(s) 1272
BstV1I GCAGC 5 cut(s) 74, 301, 434, 1055, 1155
BstV2I GAAGAC 1 cut(s) 1189
BstX2I RGATCY 1 cut(s) 177
BstXI CCANNNNNNTGG 2 cut(s) 114, 729
BstYI RGATCY 1 cut(s) 177
BsuI GTATCC 1 cut(s) 803
BsuRI GGCC 5 cut(s) 135, 404, 750, 1025, 1270
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 92
CaiI CAGNNNCTG 1 cut(s) 1193
CciI TCATGA 2 cut(s) 472, 1093
CfoI GCGC 1 cut(s) 884
Cfr13I GGNCC 5 cut(s) 134, 749, 793, 1268, 1269
Csp6I GTAC 2 cut(s) 196, 1244
CviAII CATG 8 cut(s) 170, 297, 473, 785, 835, 1094, 1226, 1282
CviQI GTAC 2 cut(s) 196, 1244
DdeI CTNAG 4 cut(s) 485, 634, 1106, 1139
DpnI GATC 7 cut(s) 12, 22, 179, 399, 564, 574, 594
DpnII GATC 7 cut(s) 10, 20, 177, 397, 562, 572, 592
EaeI YGGCCR 2 cut(s) 402, 1023
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
Eco130I CCWWGG 1 cut(s) 911
Eco24I GRGCYC 1 cut(s) 1272
Eco47I GGWCC 1 cut(s) 793
Eco88I CYCGRG 1 cut(s) 95
EcoO109I RGGNCCY 3 cut(s) 134, 749, 1269
EcoRI GAATTC 1 cut(s) 764
EcoRII CCWGG 1 cut(s) 1020
EcoT14I CCWWGG 1 cut(s) 911
EcoT22I ATGCAT 1 cut(s) 342
EcoT38I GRGCYC 1 cut(s) 1272
ErhI CCWWGG 1 cut(s) 911
FaeI CATG 8 cut(s) 173, 300, 476, 788, 838, 1097, 1229, 1285
FatI CATG 8 cut(s) 169, 296, 472, 784, 834, 1093, 1225, 1281
FauNDI CATATG 2 cut(s) 109, 724
Fnu4HI GCNGC 6 cut(s) 88, 290, 420, 423, 1044, 1144
FriOI GRGCYC 1 cut(s) 1272
Fsp4HI GCNGC 6 cut(s) 88, 290, 420, 423, 1044, 1144
FspBI CTAG 3 cut(s) 138, 653, 753
GlaI GCGC 1 cut(s) 883
GluI GCNGC 6 cut(s) 88, 290, 420, 423, 1044, 1144
HaeIII GGCC 5 cut(s) 135, 404, 750, 1025, 1270
HapII CCGG 3 cut(s) 188, 264, 1344
HhaI GCGC 1 cut(s) 884
Hin1II CATG 8 cut(s) 173, 300, 476, 788, 838, 1097, 1229, 1285
Hin6I GCGC 1 cut(s) 882
HinP1I GCGC 1 cut(s) 882
HinfI GANTC 8 cut(s) 34, 365, 469, 567, 649, 674, 986, 1090
HpaII CCGG 3 cut(s) 188, 264, 1344
HphI GGTGA 5 cut(s) 368, 486, 900, 983, 989
Hpy166II GTNNAC 1 cut(s) 317
Hpy188III TCNNGA 7 cut(s) 38, 188, 473, 545, 653, 965, 1094
Hpy8I GTNNAC 1 cut(s) 317
Hpy99I CGWCG 2 cut(s) 77, 525
HpyAV CCTTC 5 cut(s) 222, 448, 837, 1069, 1344
HpyCH4IV ACGT 3 cut(s) 448, 534, 1069
HpyCH4V TGCA 7 cut(s) 58, 125, 323, 340, 740, 938, 1289
HpyF10VI GCNNNNNNNGC 1 cut(s) 935
HpyF3I CTNAG 4 cut(s) 485, 634, 1106, 1139
HpySE526I ACGT 3 cut(s) 448, 534, 1069
Hsp92II CATG 8 cut(s) 173, 300, 476, 788, 838, 1097, 1229, 1285
HspAI GCGC 1 cut(s) 882
Kpn2I TCCGGA 1 cut(s) 187
Kzo9I GATC 7 cut(s) 10, 20, 177, 397, 562, 572, 592
LmnI GCTCC 1 cut(s) 1160
Lsp1109I GCAGC 5 cut(s) 74, 301, 434, 1055, 1155
LweI GCATC 2 cut(s) 45, 1075
MaeI CTAG 3 cut(s) 138, 653, 753
MaeII ACGT 3 cut(s) 448, 534, 1069
MaeIII GTNAC 2 cut(s) 492, 906
MalI GATC 7 cut(s) 12, 22, 179, 399, 564, 574, 594
MbiI CCGCTC 1 cut(s) 100
MboI GATC 7 cut(s) 10, 20, 177, 397, 562, 572, 592
MboII GAAGA 3 cut(s) 398, 560, 1189
MflI RGATCY 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 1272
MlsI TGGCCA 2 cut(s) 404, 1025
MluNI TGGCCA 2 cut(s) 404, 1025
MlyI GAGTC 1 cut(s) 576
MmeI TCCRAC 6 cut(s) 96, 544, 550, 645, 711, 1159
Mox20I TGGCCA 2 cut(s) 404, 1025
Mph1103I ATGCAT 1 cut(s) 342
MroI TCCGGA 1 cut(s) 187
MscI TGGCCA 2 cut(s) 404, 1025
MslI CAYNNNNRTG 2 cut(s) 112, 727
Msp20I TGGCCA 2 cut(s) 404, 1025
MspI CCGG 3 cut(s) 188, 264, 1344
MspR9I CCNGG 3 cut(s) 265, 1022, 1345
MvaI CCWGG 1 cut(s) 1022
MwoI GCNNNNNNNGC 1 cut(s) 935
NciI CCSGG 2 cut(s) 265, 1345
NdeI CATATG 2 cut(s) 109, 724
NdeII GATC 7 cut(s) 10, 20, 177, 397, 562, 572, 592
NlaIII CATG 8 cut(s) 173, 300, 476, 788, 838, 1097, 1229, 1285
NlaIV GGNNCC 7 cut(s) 104, 179, 719, 1116, 1162, 1270, 1271
NmuCI GTSAC 2 cut(s) 492, 906
NsiI ATGCAT 1 cut(s) 342
PaeR7I CTCGAG 1 cut(s) 95
PagI TCATGA 2 cut(s) 472, 1093
PcsI WCGNNNNNNNCGW 1 cut(s) 1252
PfeI GAWTC 7 cut(s) 34, 365, 469, 649, 674, 986, 1090
PflMI CCANNNNNTGG 2 cut(s) 434, 1055
PkrI GCNGC 6 cut(s) 89, 291, 421, 424, 1045, 1145
Ple19I CGATCG 1 cut(s) 23
PleI GAGTC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 575
Psp1406I AACGTT 1 cut(s) 534
Psp6I CCWGG 1 cut(s) 1020
PspGI CCWGG 1 cut(s) 1020
PspN4I GGNNCC 7 cut(s) 104, 179, 719, 1116, 1162, 1270, 1271
PspOMI GGGCCC 1 cut(s) 1268
PspPI GGNCC 5 cut(s) 134, 749, 793, 1268, 1269
PspXI VCTCGAGB 1 cut(s) 95
PstNI CAGNNNCTG 1 cut(s) 1193
PsuI RGATCY 1 cut(s) 177
PvuI CGATCG 1 cut(s) 23
RsaI GTAC 2 cut(s) 197, 1245
RsaNI GTAC 2 cut(s) 196, 1244
RseI CAYNNNNRTG 2 cut(s) 112, 727
SatI GCNGC 6 cut(s) 88, 290, 420, 423, 1044, 1144
Sau3AI GATC 7 cut(s) 10, 20, 177, 397, 562, 572, 592
Sau96I GGNCC 5 cut(s) 134, 749, 793, 1268, 1269
SchI GAGTC 1 cut(s) 576
ScrFI CCNGG 3 cut(s) 265, 1022, 1345
SduI GDGCHC 1 cut(s) 1272
SfaNI GCATC 2 cut(s) 45, 1075
Sfr274I CTCGAG 1 cut(s) 95
SinI GGWCC 1 cut(s) 793
SlaI CTCGAG 1 cut(s) 95
SmiMI CAYNNNNRTG 2 cut(s) 112, 727
SmlI CTYRAG 3 cut(s) 95, 513, 704
SmoI CTYRAG 3 cut(s) 95, 513, 704
SsiI CCGC 4 cut(s) 31, 100, 419, 646
SspI AATATT 1 cut(s) 1296
SspMI CTAG 3 cut(s) 138, 653, 753
StyD4I CCNGG 3 cut(s) 263, 1020, 1343
StyI CCWWGG 1 cut(s) 911
TaiI ACGT 3 cut(s) 451, 537, 1072
TaqI TCGA 6 cut(s) 96, 203, 565, 711, 768, 818
TauI GCSGC 1 cut(s) 422
TfiI GAWTC 7 cut(s) 34, 365, 469, 649, 674, 986, 1090
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 2 cut(s) 492, 906
TseI GCWGC 5 cut(s) 87, 289, 422, 1043, 1143
Tsp45I GTSAC 2 cut(s) 492, 906
TspGWI ACGGA 3 cut(s) 245, 528, 538
TspRI CASTG 1 cut(s) 445
Van91I CCANNNNNTGG 2 cut(s) 434, 1055
VpaK11BI GGWCC 1 cut(s) 793
XapI RAATTY 2 cut(s) 44, 764
XbaI TCTAGA 1 cut(s) 652
XhoI CTCGAG 1 cut(s) 95
XspI CTAG 3 cut(s) 138, 653, 753
Zsp2I ATGCAT 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.