Prupe.7G179900_v2.0.a1

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0029097
Physical Location & Seq
Reverse (-)
17655305 .. 17658921
3617 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G179900.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 1329 bp
ATGGTGAACTCAGGGGAGAAGCGGATTCTAGAGGAGTATGATAAGATTGAACGCAATCCCTCCGACGATTTCAAGTTCCGCAAGCTCGATTGGAACTCATATGAATGGCAAGGTGCACTGAGAGGCCCTTCTGGAACTGAATTCGAGGGTGGGATTTATCATGTGCGGCTCCTGTTTCCGAAGGAATACCCATGGAAGGAACCTTCATTCATCTTTTTGACGGAAAATGGTTCCTTCAATATCAAAACCAAGGTAACATTAAACTGGAAGCCATCAATGAGGGTGCGAGATGCTTTACTTGAACTTATTGGTTTAATGCCCGCCTGCCCAGATGGTAATTTGGATTCAGTAAAAGACAAGGAAGAAAGGCGTGATCTGGCCAAGAAATCTCGTGCCGCAGCCCCAAAATTTGGCAGTTATGAACGTCAGAAGTTAATTGATGTGAATCATGACTATATGCAAAGGGATGTTCCTCAACTCCAACTGACGAGAAACACTTCCCTGACACAGAGATGTGAGGAAGAGGTGGTTGTGGATCGAGTCGGATCAACACAGATGGAATCGGATCGGAGTGTGATAGTGGAGGACAAGTGCAACATAAAGAACTCATTGGAGAAACGGATTCTAGAGGAGTATAATGAGATTAAATCCAATCCCTCCTATGATTTCACGTGCCTCACGCAGGGGTGGAACAAATATGAATGGCAATTTGCAATCAGAGGCCCTAGTGGAACAGAATTCGAGGGTGGGATTTATCATGGGATGGTCCAGTTTTCAGAGGGATACCCATCGAAGCCTCCTTCAATTGTGTTTTTGACGGAAAATGGTTGCTTCGAAATCAAAACCAGCATCAGCTTAAGGCTATTATCGAACTGGCAGCCATCATGGAGTGTGCGAAAAACTATACTTGCATTTATTGAGGAAATGGCTAACTACCCAAATGGTGAATTGGTTTCAGTAGAAAACAATCGGGAAAAAAGGCGGGATCTGGCCATCAAATCTTGTGCAGCAGCCCCAACATATGGCACTTCTGCACGTCAGGAGGTAATTGATGGGATTCATGAATATATGCTAAGCAAGGCACCACTTGTTCCTGTTTCTCAACTGAGCCCTGTGAGCAATGGCACAGGCGGTGGCTCTGTCGTCAACAACATCGTTGGCTCTGTCGTCAACAACATCGTTGGCAATACATTTAATGTTCACGGTTCCAAACAGTCAACATGGCTCGTCAACAGCGTAGGAATGCTGCCTATTCTCCTCATCTTCCTCTTCCTCTGTCTCATCGTTGATGGTGGGTTTCGTGAATCAGAAGAGAGAGATGAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 ko04141 ko05012 map04120 map04141 map05012
Pfam Domains
Protein Families
UQ_con

Protein Analysis

443

Amino Acids

50.14

Weight (kDa)

5.57

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029097)

Species Orthologous Gene IDs
prunus_persica Prupe.7G179700_v2.0.a1 Prupe.7G179900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1081
AccB7I CCANNNNNTGG 2 cut(s) 410, 1022
AciI CCGC 7 cut(s) 22, 79, 166, 321, 396, 982, 1131
AclWI GGATC 4 cut(s) 543, 553, 573, 993
AcoI YGGCCR 2 cut(s) 378, 990
AcsI RAATTY 3 cut(s) 140, 407, 737
AcvI CACGTG 1 cut(s) 672
AfiI CCNNNNNNNGG 4 cut(s) 196, 410, 682, 1022
AflII CTTAAG 1 cut(s) 856
AgsI TTSAA 5 cut(s) 50, 73, 238, 302, 804
AjiI CACGTC 1 cut(s) 1037
AluBI AGCT 3 cut(s) 85, 855, 1326
AluI AGCT 3 cut(s) 85, 855, 1326
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 1283
Alw44I GTGCAC 1 cut(s) 114
AlwI GGATC 4 cut(s) 543, 553, 573, 993
AoxI GGCC 4 cut(s) 124, 378, 721, 990
ApaLI GTGCAC 1 cut(s) 114
ApeKI GCWGC 5 cut(s) 398, 877, 1007, 1010, 1246
ApoI RAATTY 3 cut(s) 140, 407, 737
Asp700I GAANNNNTTC 1 cut(s) 496
AspS9I GGNCC 3 cut(s) 125, 722, 766
AsuHPI GGTGA 2 cut(s) 16, 956
AsuII TTCGAA 1 cut(s) 834
AvaII GGWCC 1 cut(s) 766
BaeGI GKGCMC 1 cut(s) 118
BalI TGGCCA 2 cut(s) 380, 992
BanI GGYRCC 1 cut(s) 1081
BanII GRGCYC 1 cut(s) 1112
BauI CACGAG 1 cut(s) 390
BbrPI CACGTG 1 cut(s) 672
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 5 cut(s) 410, 889, 1019, 1022, 1233
BccI CCATC 9 cut(s) 280, 326, 550, 757, 796, 889, 1001, 1046, 1283
BciVI GTATCC 1 cut(s) 776
BcoDI GTCTC 1 cut(s) 1283
BfaI CTAG 4 cut(s) 29, 626, 726, 1327
BfrI CTTAAG 1 cut(s) 856
BfuI GTATCC 1 cut(s) 776
BisI GCNGC 7 cut(s) 167, 396, 399, 878, 1008, 1011, 1247
BlpI GCTNAGC 1 cut(s) 1073
BlsI GCNGC 7 cut(s) 168, 397, 400, 879, 1009, 1012, 1248
Bme18I GGWCC 1 cut(s) 766
BmgBI CACGTC 1 cut(s) 1037
BmgT120I GGNCC 3 cut(s) 125, 722, 766
BmiI GGNNCC 5 cut(s) 170, 201, 232, 1083, 1207
BmsI GCATC 2 cut(s) 280, 858
Bpu1102I GCTNAGC 1 cut(s) 1073
Bpu14I TTCGAA 1 cut(s) 834
BsaAI YACGTR 1 cut(s) 672
BsaBI GATNNNNATC 2 cut(s) 444, 787
BsaJI CCNNGG 2 cut(s) 191, 249
BsaXI ACNNNNNCTCC 2 cut(s) 575, 605
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 410, 682, 1022
Bse1I ACTGG 3 cut(s) 269, 769, 878
Bse3DI GCAATG 1 cut(s) 1126
Bse8I GATNNNNATC 2 cut(s) 444, 787
BseDI CCNNGG 2 cut(s) 191, 249
BseGI GGATG 2 cut(s) 472, 768
BseJI GATNNNNATC 2 cut(s) 444, 787
BseLI CCNNNNNNNGG 4 cut(s) 196, 410, 682, 1022
BseMI GCAATG 1 cut(s) 1126
BseMII CTCAG 3 cut(s) 24, 110, 1097
BseNI ACTGG 3 cut(s) 269, 769, 878
BseRI GAGGAG 3 cut(s) 47, 644, 1247
BseSI GKGCMC 1 cut(s) 118
BseXI GCAGC 5 cut(s) 410, 889, 1019, 1022, 1233
BsgI GTGCAG 2 cut(s) 1017, 1026
BshFI GGCC 4 cut(s) 126, 380, 723, 992
BshNI GGYRCC 1 cut(s) 1081
BsiHKAI GWGCWC 1 cut(s) 118
BslI CCNNNNNNNGG 4 cut(s) 196, 410, 682, 1022
BsmAI GTCTC 1 cut(s) 1283
BsmI GAATGC 1 cut(s) 1248
BsnI GGCC 4 cut(s) 126, 380, 723, 992
Bsp119I TTCGAA 1 cut(s) 834
Bsp1286I GDGCHC 2 cut(s) 118, 1112
Bsp143I GATC 5 cut(s) 373, 535, 545, 565, 985
Bsp1720I GCTNAGC 1 cut(s) 1073
Bsp19I CCATGG 1 cut(s) 191
BspACI CCGC 7 cut(s) 22, 79, 166, 321, 396, 982, 1131
BspANI GGCC 4 cut(s) 126, 380, 723, 992
BspCNI CTCAG 3 cut(s) 23, 111, 1098
BspHI TCATGA 2 cut(s) 448, 1060
BspLI GGNNCC 5 cut(s) 170, 201, 232, 1083, 1207
BspPI GGATC 4 cut(s) 543, 553, 573, 993
BspT104I TTCGAA 1 cut(s) 834
BspT107I GGYRCC 1 cut(s) 1081
BspTI CTTAAG 1 cut(s) 856
BsrDI GCAATG 1 cut(s) 1126
BsrI ACTGG 3 cut(s) 269, 769, 878
BssECI CCNNGG 2 cut(s) 191, 249
BssMI GATC 5 cut(s) 373, 535, 545, 565, 985
BssSI CACGAG 1 cut(s) 390
BssT1I CCWWGG 2 cut(s) 191, 249
Bst2BI CACGAG 1 cut(s) 390
Bst4CI ACNGT 2 cut(s) 1205, 1215
Bst6I CTCTTC 3 cut(s) 516, 1274, 1305
BstAFI CTTAAG 1 cut(s) 856
BstBAI YACGTR 1 cut(s) 672
BstBI TTCGAA 1 cut(s) 834
BstC8I GCNNGC 3 cut(s) 83, 321, 325
BstDEI CTNAG 4 cut(s) 10, 119, 1073, 1106
BstDSI CCRYGG 1 cut(s) 191
BstENI CCTNNNNNAGG 1 cut(s) 680
BstF5I GGATG 2 cut(s) 472, 768
BstKTI GATC 5 cut(s) 376, 538, 548, 568, 988
BstMAI GTCTC 1 cut(s) 1283
BstMBI GATC 5 cut(s) 373, 535, 545, 565, 985
BstMWI GCNNNNNNNGC 1 cut(s) 1116
BstSLI GKGCMC 1 cut(s) 118
BstV1I GCAGC 5 cut(s) 410, 889, 1019, 1022, 1233
BstX2I RGATCY 1 cut(s) 985
BstYI RGATCY 1 cut(s) 985
BsuI GTATCC 1 cut(s) 776
BsuRI GGCC 4 cut(s) 126, 380, 723, 992
BtgI CCRYGG 1 cut(s) 191
BtrI CACGTC 1 cut(s) 1037
BtsCI GGATG 2 cut(s) 472, 768
BtsIMutI CAGTG 1 cut(s) 116
Cac8I GCNNGC 3 cut(s) 83, 321, 325
CciI TCATGA 2 cut(s) 448, 1060
Cfr13I GGNCC 3 cut(s) 125, 722, 766
CviAII CATG 7 cut(s) 161, 192, 449, 758, 885, 1061, 1221
DdeI CTNAG 4 cut(s) 10, 119, 1073, 1106
DpnI GATC 5 cut(s) 375, 537, 547, 567, 987
DpnII GATC 5 cut(s) 373, 535, 545, 565, 985
EaeI YGGCCR 2 cut(s) 378, 990
Eam1104I CTCTTC 3 cut(s) 516, 1274, 1305
EarI CTCTTC 3 cut(s) 516, 1274, 1305
Eco130I CCWWGG 2 cut(s) 191, 249
Eco24I GRGCYC 1 cut(s) 1112
Eco47I GGWCC 1 cut(s) 766
Eco72I CACGTG 1 cut(s) 672
EcoNI CCTNNNNNAGG 1 cut(s) 680
EcoO109I RGGNCCY 2 cut(s) 125, 722
EcoRI GAATTC 2 cut(s) 140, 737
EcoT14I CCWWGG 2 cut(s) 191, 249
EcoT38I GRGCYC 1 cut(s) 1112
ErhI CCWWGG 2 cut(s) 191, 249
FaeI CATG 7 cut(s) 164, 195, 452, 761, 888, 1064, 1224
FatI CATG 7 cut(s) 160, 191, 448, 757, 884, 1060, 1220
FauI CCCGC 2 cut(s) 328, 975
FauNDI CATATG 2 cut(s) 100, 1021
Fnu4HI GCNGC 7 cut(s) 167, 396, 399, 878, 1008, 1011, 1247
FokI GGATG 2 cut(s) 479, 775
FriOI GRGCYC 1 cut(s) 1112
Fsp4HI GCNGC 7 cut(s) 167, 396, 399, 878, 1008, 1011, 1247
FspBI CTAG 4 cut(s) 29, 626, 726, 1327
GluI GCNGC 7 cut(s) 167, 396, 399, 878, 1008, 1011, 1247
HaeIII GGCC 4 cut(s) 126, 380, 723, 992
Hin1II CATG 7 cut(s) 164, 195, 452, 761, 888, 1064, 1224
HincII GTYRAC 4 cut(s) 1147, 1171, 1218, 1231
HindII GTYRAC 4 cut(s) 1147, 1171, 1218, 1231
HinfI GANTC 8 cut(s) 25, 344, 445, 540, 560, 622, 1057, 1304
HphI GGTGA 2 cut(s) 16, 956
Hpy166II GTNNAC 7 cut(s) 7, 116, 1147, 1171, 1201, 1218, 1231
Hpy188I TCNGA 9 cut(s) 64, 180, 429, 545, 565, 570, 719, 778, 1309
Hpy188III TCNNGA 8 cut(s) 29, 132, 449, 626, 971, 1040, 1061, 1301
Hpy8I GTNNAC 7 cut(s) 7, 116, 1147, 1171, 1201, 1218, 1231
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 6 cut(s) 138, 175, 190, 213, 244, 810
HpyCH4III ACNGT 2 cut(s) 1205, 1215
HpyCH4IV ACGT 3 cut(s) 424, 671, 1036
HpyCH4V TGCA 7 cut(s) 116, 460, 594, 713, 911, 1007, 1034
HpyF10VI GCNNNNNNNGC 1 cut(s) 1116
HpyF3I CTNAG 4 cut(s) 10, 119, 1073, 1106
HpySE526I ACGT 3 cut(s) 424, 671, 1036
Hsp92II CATG 7 cut(s) 164, 195, 452, 761, 888, 1064, 1224
Kzo9I GATC 5 cut(s) 373, 535, 545, 565, 985
LmnI GCTCC 1 cut(s) 174
Lsp1109I GCAGC 5 cut(s) 410, 889, 1019, 1022, 1233
LweI GCATC 2 cut(s) 280, 858
MaeI CTAG 4 cut(s) 29, 626, 726, 1327
MaeII ACGT 3 cut(s) 424, 671, 1036
MaeIII GTNAC 1 cut(s) 253
MalI GATC 5 cut(s) 375, 537, 547, 567, 987
MboI GATC 5 cut(s) 373, 535, 545, 565, 985
MboII GAAGA 5 cut(s) 374, 533, 1255, 1261, 1322
MfeI CAATTG 1 cut(s) 804
MflI RGATCY 1 cut(s) 985
MhlI GDGCHC 2 cut(s) 118, 1112
MlsI TGGCCA 2 cut(s) 380, 992
MluCI AATT 9 cut(s) 140, 337, 407, 435, 707, 737, 804, 947, 1047
MluNI TGGCCA 2 cut(s) 380, 992
MlyI GAGTC 1 cut(s) 549
MmeI TCCRAC 3 cut(s) 87, 505, 523
Mox20I TGGCCA 2 cut(s) 380, 992
MroXI GAANNNNTTC 1 cut(s) 496
MscI TGGCCA 2 cut(s) 380, 992
MseI TTAA 6 cut(s) 260, 314, 434, 645, 857, 1194
MslI CAYNNNNRTG 2 cut(s) 103, 511
Msp20I TGGCCA 2 cut(s) 380, 992
MspCI CTTAAG 1 cut(s) 856
MunI CAATTG 1 cut(s) 804
Mva1269I GAATGC 1 cut(s) 1248
MwoI GCNNNNNNNGC 1 cut(s) 1116
NcoI CCATGG 1 cut(s) 191
NdeI CATATG 2 cut(s) 100, 1021
NdeII GATC 5 cut(s) 373, 535, 545, 565, 985
NlaIII CATG 7 cut(s) 164, 195, 452, 761, 888, 1064, 1224
NlaIV GGNNCC 5 cut(s) 170, 201, 232, 1083, 1207
NspV TTCGAA 1 cut(s) 834
PagI TCATGA 2 cut(s) 448, 1060
PcsI WCGNNNNNNNCGW 1 cut(s) 1233
PctI GAATGC 1 cut(s) 1248
PdmI GAANNNNTTC 1 cut(s) 496
PfeI GAWTC 7 cut(s) 25, 344, 445, 560, 622, 1057, 1304
PflMI CCANNNNNTGG 2 cut(s) 410, 1022
PkrI GCNGC 7 cut(s) 168, 397, 400, 879, 1009, 1012, 1248
PleI GAGTC 1 cut(s) 548
PmaCI CACGTG 1 cut(s) 672
PmlI CACGTG 1 cut(s) 672
PpsI GAGTC 1 cut(s) 548
Ppu21I YACGTR 1 cut(s) 672
PspCI CACGTG 1 cut(s) 672
PspN4I GGNNCC 5 cut(s) 170, 201, 232, 1083, 1207
PspPI GGNCC 3 cut(s) 125, 722, 766
PsuI RGATCY 1 cut(s) 985
RseI CAYNNNNRTG 2 cut(s) 103, 511
SaqAI TTAA 6 cut(s) 260, 314, 434, 645, 857, 1194
SatI GCNGC 7 cut(s) 167, 396, 399, 878, 1008, 1011, 1247
Sau3AI GATC 5 cut(s) 373, 535, 545, 565, 985
Sau96I GGNCC 3 cut(s) 125, 722, 766
SchI GAGTC 1 cut(s) 549
SduI GDGCHC 2 cut(s) 118, 1112
SfaNI GCATC 2 cut(s) 280, 858
SfuI TTCGAA 1 cut(s) 834
SinI GGWCC 1 cut(s) 766
SmiMI CAYNNNNRTG 2 cut(s) 103, 511
SmlI CTYRAG 1 cut(s) 856
SmoI CTYRAG 1 cut(s) 856
Sse9I AATT 9 cut(s) 140, 337, 407, 435, 707, 737, 804, 947, 1047
SsiI CCGC 7 cut(s) 22, 79, 166, 321, 396, 982, 1131
SspMI CTAG 4 cut(s) 29, 626, 726, 1327
StyI CCWWGG 2 cut(s) 191, 249
TaaI ACNGT 2 cut(s) 1205, 1215
TaiI ACGT 3 cut(s) 427, 674, 1039
TaqI TCGA 7 cut(s) 87, 144, 538, 741, 791, 834, 869
TasI AATT 9 cut(s) 140, 337, 407, 435, 707, 737, 804, 947, 1047
TauI GCSGC 2 cut(s) 169, 398
TfiI GAWTC 7 cut(s) 25, 344, 445, 560, 622, 1057, 1304
Tru1I TTAA 6 cut(s) 260, 314, 434, 645, 857, 1194
Tru9I TTAA 6 cut(s) 260, 314, 434, 645, 857, 1194
TscAI CASTG 1 cut(s) 123
TseI GCWGC 5 cut(s) 398, 877, 1007, 1010, 1246
TspDTI ATGAA 7 cut(s) 117, 195, 199, 435, 714, 1049, 1077
TspGWI ACGGA 3 cut(s) 236, 634, 833
TspRI CASTG 1 cut(s) 123
Van91I CCANNNNNTGG 2 cut(s) 410, 1022
Vha464I CTTAAG 1 cut(s) 856
VneI GTGCAC 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 766
XagI CCTNNNNNAGG 1 cut(s) 680
XapI RAATTY 3 cut(s) 140, 407, 737
XbaI TCTAGA 2 cut(s) 28, 625
XmnI GAANNNNTTC 1 cut(s) 496
XspI CTAG 4 cut(s) 29, 626, 726, 1327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.