Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD15G1181100.v1.1 |
| prunus_persica | Prupe.7G234500_v2.0.a1 |
| pyrus_communis | pycom15g16340 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 542 |
| AccI | GTMKAC | 1 cut(s) | 431 |
| AcoI | YGGCCR | 1 cut(s) | 48 |
| AcsI | RAATTY | 2 cut(s) | 349, 388 |
| AcuI | CTGAAG | 1 cut(s) | 426 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 542 |
| AgsI | TTSAA | 4 cut(s) | 387, 510, 600, 616 |
| AleI | CACNNNNGTG | 1 cut(s) | 163 |
| AluBI | AGCT | 3 cut(s) | 119, 293, 446 |
| AluI | AGCT | 3 cut(s) | 119, 293, 446 |
| Alw21I | GWGCWC | 1 cut(s) | 236 |
| Alw26I | GTCTC | 2 cut(s) | 475, 563 |
| AoxI | GGCC | 3 cut(s) | 39, 48, 192 |
| ApeKI | GCWGC | 1 cut(s) | 116 |
| ApoI | RAATTY | 2 cut(s) | 349, 388 |
| AseI | ATTAAT | 1 cut(s) | 554 |
| AsuC2I | CCSGG | 2 cut(s) | 356, 499 |
| AsuHPI | GGTGA | 2 cut(s) | 199, 471 |
| BalI | TGGCCA | 1 cut(s) | 50 |
| Bbv12I | GWGCWC | 1 cut(s) | 236 |
| BbvCI | CCTCAGC | 1 cut(s) | 289 |
| BbvI | GCAGC | 1 cut(s) | 128 |
| BccI | CCATC | 5 cut(s) | 97, 299, 407, 523, 586 |
| BclI | TGATCA | 1 cut(s) | 421 |
| BcnI | CCSGG | 2 cut(s) | 356, 499 |
| BcoDI | GTCTC | 2 cut(s) | 475, 563 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 47 |
| BisI | GCNGC | 1 cut(s) | 117 |
| BlsI | GCNGC | 1 cut(s) | 118 |
| Bme1390I | CCNGG | 2 cut(s) | 356, 499 |
| BmrFI | CCNGG | 2 cut(s) | 356, 499 |
| BmsI | GCATC | 2 cut(s) | 65, 349 |
| Bpu10I | CCTNAGC | 1 cut(s) | 289 |
| BpuMI | CCSGG | 2 cut(s) | 356, 499 |
| BsaJI | CCNNGG | 2 cut(s) | 51, 354 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 542 |
| BseDI | CCNNGG | 2 cut(s) | 51, 354 |
| BseGI | GGATG | 3 cut(s) | 82, 364, 398 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 542 |
| BseMII | CTCAG | 2 cut(s) | 303, 558 |
| BseXI | GCAGC | 1 cut(s) | 128 |
| BsgI | GTGCAG | 1 cut(s) | 114 |
| BshFI | GGCC | 3 cut(s) | 41, 50, 194 |
| BsiHKAI | GWGCWC | 1 cut(s) | 236 |
| BsiSI | CCGG | 2 cut(s) | 356, 498 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 542 |
| BsmAI | GTCTC | 2 cut(s) | 475, 563 |
| BsmI | GAATGC | 1 cut(s) | 123 |
| BsnI | GGCC | 3 cut(s) | 41, 50, 194 |
| Bsp1286I | GDGCHC | 1 cut(s) | 236 |
| Bsp143I | GATC | 1 cut(s) | 421 |
| Bsp19I | CCATGG | 1 cut(s) | 51 |
| BspANI | GGCC | 3 cut(s) | 41, 50, 194 |
| BspCNI | CTCAG | 2 cut(s) | 302, 559 |
| BspHI | TCATGA | 1 cut(s) | 418 |
| BssECI | CCNNGG | 2 cut(s) | 51, 354 |
| BssMI | GATC | 1 cut(s) | 421 |
| BssT1I | CCWWGG | 1 cut(s) | 51 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 113 |
| BstC8I | GCNNGC | 2 cut(s) | 121, 295 |
| BstDEI | CTNAG | 2 cut(s) | 289, 567 |
| BstDSI | CCRYGG | 1 cut(s) | 51 |
| BstF5I | GGATG | 3 cut(s) | 82, 364, 398 |
| BstKTI | GATC | 1 cut(s) | 424 |
| BstMAI | GTCTC | 2 cut(s) | 475, 563 |
| BstMBI | GATC | 1 cut(s) | 421 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 47, 62, 113 |
| BstSCI | CCNGG | 2 cut(s) | 354, 497 |
| BstV1I | GCAGC | 1 cut(s) | 128 |
| BsuRI | GGCC | 3 cut(s) | 41, 50, 194 |
| BtgI | CCRYGG | 1 cut(s) | 51 |
| BtsCI | GGATG | 3 cut(s) | 82, 364, 398 |
| BtsI | GCAGTG | 1 cut(s) | 547 |
| BtsIMutI | CAGTG | 3 cut(s) | 234, 547, 605 |
| Cac8I | GCNNGC | 2 cut(s) | 121, 295 |
| CciI | TCATGA | 1 cut(s) | 418 |
| CviAII | CATG | 3 cut(s) | 52, 247, 419 |
| CviJI | RGCY | 9 cut(s) | 41, 50, 119, 194, 252, 275, 293, 446, 514 |
| CviKI_1 | RGCY | 9 cut(s) | 41, 50, 119, 194, 252, 275, 293, 446, 514 |
| DdeI | CTNAG | 2 cut(s) | 289, 567 |
| DpnI | GATC | 1 cut(s) | 423 |
| DpnII | GATC | 1 cut(s) | 421 |
| DraI | TTTAAA | 1 cut(s) | 373 |
| EaeI | YGGCCR | 1 cut(s) | 48 |
| Eco130I | CCWWGG | 1 cut(s) | 51 |
| Eco57I | CTGAAG | 1 cut(s) | 426 |
| EcoT14I | CCWWGG | 1 cut(s) | 51 |
| ErhI | CCWWGG | 1 cut(s) | 51 |
| FaeI | CATG | 3 cut(s) | 55, 250, 422 |
| FaiI | YATR | 5 cut(s) | 53, 214, 248, 420, 577 |
| FatI | CATG | 3 cut(s) | 51, 246, 418 |
| FbaI | TGATCA | 1 cut(s) | 421 |
| FblI | GTMKAC | 1 cut(s) | 431 |
| Fnu4HI | GCNGC | 1 cut(s) | 117 |
| FokI | GGATG | 3 cut(s) | 89, 371, 385 |
| Fsp4HI | GCNGC | 1 cut(s) | 117 |
| GluI | GCNGC | 1 cut(s) | 117 |
| HaeIII | GGCC | 3 cut(s) | 41, 50, 194 |
| HapII | CCGG | 2 cut(s) | 356, 498 |
| Hin1II | CATG | 3 cut(s) | 55, 250, 422 |
| HincII | GTYRAC | 1 cut(s) | 564 |
| HindII | GTYRAC | 1 cut(s) | 564 |
| HinfI | GANTC | 3 cut(s) | 383, 506, 521 |
| HpaI | GTTAAC | 1 cut(s) | 564 |
| HpaII | CCGG | 2 cut(s) | 356, 498 |
| HphI | GGTGA | 2 cut(s) | 199, 471 |
| Hpy166II | GTNNAC | 2 cut(s) | 432, 564 |
| Hpy188I | TCNGA | 4 cut(s) | 319, 336, 505, 520 |
| Hpy188III | TCNNGA | 1 cut(s) | 419 |
| Hpy8I | GTNNAC | 2 cut(s) | 432, 564 |
| HpyAV | CCTTC | 4 cut(s) | 178, 184, 252, 492 |
| HpyCH4V | TGCA | 5 cut(s) | 95, 116, 123, 297, 362 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 47, 62, 113 |
| HpyF3I | CTNAG | 2 cut(s) | 289, 567 |
| Hsp92II | CATG | 3 cut(s) | 55, 250, 422 |
| Ksp22I | TGATCA | 1 cut(s) | 421 |
| KspAI | GTTAAC | 1 cut(s) | 564 |
| Kzo9I | GATC | 1 cut(s) | 421 |
| LmnI | GCTCC | 1 cut(s) | 545 |
| LpnPI | CCDG | 4 cut(s) | 174, 270, 369, 511 |
| Lsp1109I | GCAGC | 1 cut(s) | 128 |
| LweI | GCATC | 2 cut(s) | 65, 349 |
| MalI | GATC | 1 cut(s) | 423 |
| MboI | GATC | 1 cut(s) | 421 |
| MboII | GAAGA | 4 cut(s) | 447, 477, 480, 483 |
| MhlI | GDGCHC | 1 cut(s) | 236 |
| MlsI | TGGCCA | 1 cut(s) | 50 |
| MluCI | AATT | 2 cut(s) | 349, 388 |
| MluNI | TGGCCA | 1 cut(s) | 50 |
| MlyI | GAGTC | 1 cut(s) | 515 |
| MnlI | CCTC | 6 cut(s) | 52, 67, 263, 298, 370, 505 |
| Mox20I | TGGCCA | 1 cut(s) | 50 |
| MscI | TGGCCA | 1 cut(s) | 50 |
| MseI | TTAA | 3 cut(s) | 372, 554, 563 |
| MslI | CAYNNNNRTG | 1 cut(s) | 163 |
| Msp20I | TGGCCA | 1 cut(s) | 50 |
| MspI | CCGG | 2 cut(s) | 356, 498 |
| MspR9I | CCNGG | 2 cut(s) | 356, 499 |
| Mva1269I | GAATGC | 1 cut(s) | 123 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 47, 62, 113 |
| NciI | CCSGG | 2 cut(s) | 356, 499 |
| NcoI | CCATGG | 1 cut(s) | 51 |
| NdeII | GATC | 1 cut(s) | 421 |
| NlaIII | CATG | 3 cut(s) | 55, 250, 422 |
| OliI | CACNNNNGTG | 1 cut(s) | 163 |
| PagI | TCATGA | 1 cut(s) | 418 |
| PctI | GAATGC | 1 cut(s) | 123 |
| PfeI | GAWTC | 2 cut(s) | 383, 506 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 542 |
| PkrI | GCNGC | 1 cut(s) | 118 |
| PleI | GAGTC | 1 cut(s) | 515 |
| PpsI | GAGTC | 1 cut(s) | 515 |
| PshBI | ATTAAT | 1 cut(s) | 554 |
| RseI | CAYNNNNRTG | 1 cut(s) | 163 |
| SaqAI | TTAA | 3 cut(s) | 372, 554, 563 |
| SatI | GCNGC | 1 cut(s) | 117 |
| Sau3AI | GATC | 1 cut(s) | 421 |
| SchI | GAGTC | 1 cut(s) | 515 |
| ScrFI | CCNGG | 2 cut(s) | 356, 499 |
| SduI | GDGCHC | 1 cut(s) | 236 |
| SetI | ASST | 5 cut(s) | 121, 189, 295, 448, 484 |
| SfaNI | GCATC | 2 cut(s) | 65, 349 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 47 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 163 |
| Sse9I | AATT | 2 cut(s) | 349, 388 |
| StyD4I | CCNGG | 2 cut(s) | 354, 497 |
| StyI | CCWWGG | 1 cut(s) | 51 |
| TasI | AATT | 2 cut(s) | 349, 388 |
| TfiI | GAWTC | 2 cut(s) | 383, 506 |
| Tru1I | TTAA | 3 cut(s) | 372, 554, 563 |
| Tru9I | TTAA | 3 cut(s) | 372, 554, 563 |
| TscAI | CASTG | 3 cut(s) | 241, 547, 612 |
| TseI | GCWGC | 1 cut(s) | 116 |
| TspDTI | ATGAA | 3 cut(s) | 102, 447, 572 |
| TspRI | CASTG | 3 cut(s) | 241, 547, 612 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 542 |
| VspI | ATTAAT | 1 cut(s) | 554 |
| XapI | RAATTY | 2 cut(s) | 349, 388 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 58 |
| XmiI | GTMKAC | 1 cut(s) | 431 |