Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0029076

Physical Location & Seq

Genomic Coordinates Reverse (-)

22191271 .. 22194381

Gene Structure 3111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G270700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCTGCGATTATTTCAAAAAAGAGACGAAAACAAAGCGATGCGCTGTGTCTGACTCTCAGTTTGGTTTCTAAAACCCTAACCTCAAAGAAGCTGTGGCATTCAGACTCCGTACGTACGATGGCGTTGATGCTTAAAGTCCCAGCCAATTGCATCGTTGTTCAGCAACCTAAGCGGGCATTCTTGGGTGGAGCTGGAACCAGTAGATTGGGTGCTATTAGTACCAATCGGAAGCAAAGAGTTTCATCATCATCATCATCAGCTATCAGTATGATCCCAAAGATGTCAATTTCAGCCATTCCTAACCAACGTGATGACAAGTCTATGTCCAAGAACAAGATTGACATTCCTATCATGGTAAACGGATGTAGTGGCAAAATGGGGAAGGCCATTATCCAAGCAGCAGACTCTGCAGGACTCGGAGTGGTTCCCGTATCATTTGGCTCTGCTGAGGAATCTGGGCAAACAGTCCAAGTCGGTGCAACCGAGATTGTGGTGCATGGTCCTTCTGAACGAGAAAGCACCCTTGCATCCCTTCTTGAGAAATATCCCAATTTGATTGTGGTCGACTTCACTGTGCCTTCTGCAGTAAATGATAATGCAGAGCTGTATGGCAAAGTTGGAGTTCCCTTTGTGATGGGAACAACCGGTGGAGATAGGGATCAGTTGTATAAAACTGTAGAAGACTCAAAAGTCTATGCTGTAATTTCCCCACAAATGGGAAAACAGGTTGTGGCATTTCTTGCGGCCATGGAAATTATGGCTGAGCAATTTCCTGGAGCTTTCTCTGGGTATTCCCTACAGGTGATGGAATCCCATCAATCAAGTAAAGTTGACACATCTGGAACTGCTAAGGCTGTTATTTCTTGCTTCCAGAAGTTGGGCGTGTGCTTTGATATGGAACAGATCCAATTGATCCGGGATACCCAGCAACAGATAGAGATGGTGGGAGTTCCAGAGGAGCATTTGTCTGGTCATGCATTTCATATGTATCATCTTACTTCACCTGATCAAACAGTTTCTTTTGAGTTTCAGCATAATGTTTGTGGTAGATCAATATATGCAGAGGGTACAGTTGATGCTGTAATTTTCCTTGCTAAGAAGGTTCATTCAGGGGCAGACAAGCGGATATACAATATGATGGATGTCCTGCGAGAGGGTAATATGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008839 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0019752 GO:0019877 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046451 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00261 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00261 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DapB_C DapB_N

Protein Analysis

391

Amino Acids

42.18

Weight (kDa)

8.76

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029076)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G270700_v2.0.a1 Prupe.7G270700_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	692
AccB7I	CCANNNNNTGG	1 cut(s)	880
AccI	GTMKAC	1 cut(s)	567
AciI	CCGC	3 cut(s)	175, 746, 1126
AclWI	GGATC	4 cut(s)	268, 669, 901, 910
AcoI	YGGCCR	1 cut(s)	747
AfaI	GTAC	4 cut(s)	114, 118, 223, 1072
AfiI	CCNNNNNNNGG	4 cut(s)	718, 719, 880, 1156
AgeI	ACCGGT	1 cut(s)	647
AgsI	TTSAA	1 cut(s)	18
AjnI	CCWGG	1 cut(s)	775
AluBI	AGCT	5 cut(s)	94, 194, 263, 607, 782
AluI	AGCT	5 cut(s)	94, 194, 263, 607, 782
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	4 cut(s)	268, 669, 901, 910
AlwNI	CAGNNNCTG	1 cut(s)	410
AoxI	GGCC	2 cut(s)	387, 747
ApeKI	GCWGC	2 cut(s)	5, 401
ArsI	GACNNNNNNTTYG	2 cut(s)	46, 78
AsiGI	ACCGGT	1 cut(s)	647
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	503
AsuC2I	CCSGG	1 cut(s)	920
AsuHPI	GGTGA	2 cut(s)	817, 996
AvaII	GGWCC	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	690
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	1 cut(s)	413
BccI	CCATC	6 cut(s)	115, 631, 802, 825, 937, 1135
BciT130I	CCWGG	1 cut(s)	777
BciVI	GTATCC	1 cut(s)	916
BclI	TGATCA	1 cut(s)	1009
BcnI	CCSGG	1 cut(s)	920
BcoDI	GTCTC	1 cut(s)	19
BfmI	CTRYAG	4 cut(s)	411, 585, 678, 800
BfuI	GTATCC	1 cut(s)	916
BisI	GCNGC	3 cut(s)	6, 402, 747
BlpI	GCTNAGC	1 cut(s)	765
BlsI	GCNGC	3 cut(s)	7, 403, 748
Bme1390I	CCNGG	2 cut(s)	777, 920
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	2 cut(s)	199, 429
BmrFI	CCNGG	2 cut(s)	777, 920
BmsI	GCATC	5 cut(s)	31, 120, 162, 539, 1069
BpiI	GAAGAC	1 cut(s)	690
BpmI	CTGGAG	1 cut(s)	798
Bpu10I	CCTNAGC	3 cut(s)	171, 450, 852
Bpu1102I	GCTNAGC	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	560
BpuMI	CCSGG	1 cut(s)	920
BsaAI	YACGTR	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	660
BsaJI	CCNNGG	1 cut(s)	750
BsaWI	WCCGGW	1 cut(s)	647
BsaXI	ACNNNNNCTCC	2 cut(s)	953, 983
Bsc4I	CCNNNNNNNGG	4 cut(s)	718, 719, 880, 1156
Bse118I	RCCGGY	1 cut(s)	647
Bse1I	ACTGG	1 cut(s)	201
Bse8I	GATNNNNATC	1 cut(s)	660
BseBI	CCWGG	1 cut(s)	777
BseDI	CCNNGG	1 cut(s)	750
BseGI	GGATG	3 cut(s)	371, 530, 1150
BseJI	GATNNNNATC	1 cut(s)	660
BseLI	CCNNNNNNNGG	4 cut(s)	718, 719, 880, 1156
BseMII	CTCAG	3 cut(s)	73, 441, 756
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	974
BseXI	GCAGC	1 cut(s)	413
BseYI	CCCAGC	2 cut(s)	142, 927
BshFI	GGCC	2 cut(s)	389, 749
BshTI	ACCGGT	1 cut(s)	647
BsiSI	CCGG	2 cut(s)	648, 919
BsiWI	CGTACG	2 cut(s)	112, 116
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	4 cut(s)	718, 719, 880, 1156
BsmAI	GTCTC	1 cut(s)	19
BsmBI	CGTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	125
BsmI	GAATGC	2 cut(s)	100, 179
BsnI	GGCC	2 cut(s)	389, 749
Bsp143I	GATC	6 cut(s)	273, 661, 906, 915, 1009, 1052
Bsp1720I	GCTNAGC	1 cut(s)	765
Bsp19I	CCATGG	1 cut(s)	750
BspACI	CCGC	3 cut(s)	175, 746, 1126
BspANI	GGCC	2 cut(s)	389, 749
BspCNI	CTCAG	3 cut(s)	72, 442, 757
BspLI	GGNNCC	2 cut(s)	199, 429
BspMAI	CTGCAG	2 cut(s)	415, 589
BspPI	GGATC	4 cut(s)	268, 669, 901, 910
BsrFI	RCCGGY	1 cut(s)	647
BsrI	ACTGG	1 cut(s)	201
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	1 cut(s)	750
BssMI	GATC	6 cut(s)	273, 661, 906, 915, 1009, 1052
BssT1I	CCWWGG	1 cut(s)	750
Bst2UI	CCWGG	1 cut(s)	777
Bst4CI	ACNGT	5 cut(s)	469, 577, 679, 1018, 1075
BstAPI	GCANNNNNTGC	2 cut(s)	410, 743
BstBAI	YACGTR	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	6 cut(s)	59, 171, 450, 765, 852, 1098
BstDSI	CCRYGG	1 cut(s)	750
BstENI	CCTNNNNNAGG	1 cut(s)	1154
BstF5I	GGATG	3 cut(s)	371, 530, 1150
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	6 cut(s)	276, 664, 909, 918, 1012, 1055
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	6 cut(s)	273, 661, 906, 915, 1009, 1052
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 410, 743
BstNI	CCWGG	1 cut(s)	777
BstSCI	CCNGG	2 cut(s)	775, 918
BstSFI	CTRYAG	4 cut(s)	411, 585, 678, 800
BstSNI	TACGTA	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	413
BstV2I	GAAGAC	1 cut(s)	690
BstX2I	RGATCY	1 cut(s)	906
BstXI	CCANNNNNNTGG	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	906
BsuI	GTATCC	1 cut(s)	916
BsuRI	GGCC	2 cut(s)	389, 749
BtgI	CCRYGG	1 cut(s)	750
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	3 cut(s)	371, 530, 1150
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	1 cut(s)	177
CaiI	CAGNNNCTG	1 cut(s)	410
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	647
Cfr13I	GGNCC	1 cut(s)	503
Csp6I	GTAC	4 cut(s)	113, 117, 222, 1071
CspAI	ACCGGT	1 cut(s)	647
CviAII	CATG	4 cut(s)	355, 500, 751, 977
CviQI	GTAC	4 cut(s)	113, 117, 222, 1071
DdeI	CTNAG	6 cut(s)	59, 171, 450, 765, 852, 1098
DpnI	GATC	6 cut(s)	275, 663, 908, 917, 1011, 1054
DpnII	GATC	6 cut(s)	273, 661, 906, 915, 1009, 1052
DrdI	GACNNNNNNGTC	1 cut(s)	692
DseDI	GACNNNNNNGTC	1 cut(s)	692
EaeI	YGGCCR	1 cut(s)	747
Eco105I	TACGTA	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	750
Eco47I	GGWCC	1 cut(s)	503
EcoNI	CCTNNNNNAGG	1 cut(s)	1154
EcoRII	CCWGG	1 cut(s)	775
EcoT14I	CCWWGG	1 cut(s)	750
EcoT22I	ATGCAT	1 cut(s)	982
ErhI	CCWWGG	1 cut(s)	750
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	4 cut(s)	358, 503, 754, 980
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	4 cut(s)	354, 499, 750, 976
FauI	CCCGC	1 cut(s)	168
FauNDI	CATATG	1 cut(s)	987
FbaI	TGATCA	1 cut(s)	1009
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	3 cut(s)	6, 402, 747
FokI	GGATG	3 cut(s)	378, 517, 1157
Fsp4HI	GCNGC	3 cut(s)	6, 402, 747
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	3 cut(s)	6, 402, 747
GsaI	CCCAGC	2 cut(s)	146, 931
GsuI	CTGGAG	1 cut(s)	798
HaeIII	GGCC	2 cut(s)	389, 749
HapII	CCGG	2 cut(s)	648, 919
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	4 cut(s)	358, 503, 754, 980
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	2 cut(s)	568, 835
HindII	GTYRAC	2 cut(s)	568, 835
HinfI	GANTC	7 cut(s)	55, 107, 407, 417, 455, 686, 812
HpaII	CCGG	2 cut(s)	648, 919
HphI	GGTGA	2 cut(s)	817, 996
Hpy166II	GTNNAC	3 cut(s)	361, 568, 835
Hpy188I	TCNGA	5 cut(s)	54, 106, 231, 422, 511
Hpy188III	TCNNGA	4 cut(s)	539, 843, 874, 956
Hpy8I	GTNNAC	3 cut(s)	361, 568, 835
HpyAV	CCTTC	5 cut(s)	379, 516, 545, 591, 1096
HpyCH4III	ACNGT	5 cut(s)	469, 577, 679, 1018, 1075
HpyCH4IV	ACGT	2 cut(s)	115, 310
HpyCH4V	TGCA	9 cut(s)	153, 413, 482, 499, 530, 587, 602, 980, 1064
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 410, 743
HpyF3I	CTNAG	6 cut(s)	59, 171, 450, 765, 852, 1098
HpySE526I	ACGT	2 cut(s)	115, 310
Hsp92II	CATG	4 cut(s)	358, 503, 754, 980
HspAI	GCGC	1 cut(s)	44
Ksp22I	TGATCA	1 cut(s)	1009
Kzo9I	GATC	6 cut(s)	273, 661, 906, 915, 1009, 1052
LmnI	GCTCC	3 cut(s)	191, 779, 961
Lsp1109I	GCAGC	1 cut(s)	413
LweI	GCATC	5 cut(s)	31, 120, 162, 539, 1069
MaeII	ACGT	2 cut(s)	115, 310
MalI	GATC	6 cut(s)	275, 663, 908, 917, 1011, 1054
MboI	GATC	6 cut(s)	273, 661, 906, 915, 1009, 1052
MboII	GAAGA	1 cut(s)	695
MfeI	CAATTG	2 cut(s)	148, 911
MflI	RGATCY	1 cut(s)	906
MluCI	AATT	8 cut(s)	148, 288, 553, 705, 756, 770, 911, 1086
MlyI	GAGTC	5 cut(s)	49, 101, 401, 411, 680
MmeI	TCCRAC	1 cut(s)	601
MnlI	CCTC	5 cut(s)	94, 445, 952, 1060, 1150
Mph1103I	ATGCAT	1 cut(s)	982
MseI	TTAA	1 cut(s)	135
MspI	CCGG	2 cut(s)	648, 919
MspR9I	CCNGG	2 cut(s)	777, 920
MunI	CAATTG	2 cut(s)	148, 911
Mva1269I	GAATGC	2 cut(s)	100, 179
MvaI	CCWGG	1 cut(s)	777
MwoI	GCNNNNNNNGC	3 cut(s)	172, 410, 743
NciI	CCSGG	1 cut(s)	920
NcoI	CCATGG	1 cut(s)	750
NdeI	CATATG	1 cut(s)	987
NdeII	GATC	6 cut(s)	273, 661, 906, 915, 1009, 1052
NlaIII	CATG	4 cut(s)	358, 503, 754, 980
NlaIV	GGNNCC	2 cut(s)	199, 429
NsiI	ATGCAT	1 cut(s)	982
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PctI	GAATGC	2 cut(s)	100, 179
PfeI	GAWTC	2 cut(s)	455, 812
Pfl23II	CGTACG	2 cut(s)	112, 116
PflMI	CCANNNNNTGG	1 cut(s)	880
PfoI	TCCNGGA	2 cut(s)	775, 918
PinAI	ACCGGT	1 cut(s)	647
PkrI	GCNGC	3 cut(s)	7, 403, 748
PleI	GAGTC	5 cut(s)	49, 101, 401, 411, 680
PpsI	GAGTC	5 cut(s)	49, 101, 401, 411, 680
Ppu21I	YACGTR	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	775
PspFI	CCCAGC	2 cut(s)	142, 927
PspGI	CCWGG	1 cut(s)	775
PspLI	CGTACG	2 cut(s)	112, 116
PspN4I	GGNNCC	2 cut(s)	199, 429
PspPI	GGNCC	1 cut(s)	503
PstI	CTGCAG	2 cut(s)	415, 589
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	1 cut(s)	906
RsaI	GTAC	4 cut(s)	114, 118, 223, 1072
RsaNI	GTAC	4 cut(s)	113, 117, 222, 1071
SalI	GTCGAC	1 cut(s)	566
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	3 cut(s)	6, 402, 747
Sau3AI	GATC	6 cut(s)	273, 661, 906, 915, 1009, 1052
Sau96I	GGNCC	1 cut(s)	503
SchI	GAGTC	5 cut(s)	49, 101, 401, 411, 680
ScrFI	CCNGG	2 cut(s)	777, 920
SfaNI	GCATC	5 cut(s)	31, 120, 162, 539, 1069
SfcI	CTRYAG	4 cut(s)	411, 585, 678, 800
SinI	GGWCC	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
SnaBI	TACGTA	1 cut(s)	116
Sse9I	AATT	8 cut(s)	148, 288, 553, 705, 756, 770, 911, 1086
SsiI	CCGC	3 cut(s)	175, 746, 1126
StyD4I	CCNGG	2 cut(s)	775, 918
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	5 cut(s)	469, 577, 679, 1018, 1075
TaiI	ACGT	2 cut(s)	118, 313
TaqI	TCGA	1 cut(s)	567
TasI	AATT	8 cut(s)	148, 288, 553, 705, 756, 770, 911, 1086
TauI	GCSGC	1 cut(s)	749
TfiI	GAWTC	2 cut(s)	455, 812
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	580
TseI	GCWGC	2 cut(s)	5, 401
TspDTI	ATGAA	3 cut(s)	234, 974, 1097
TspGWI	ACGGA	2 cut(s)	100, 378
TspRI	CASTG	1 cut(s)	580
Van91I	CCANNNNNTGG	1 cut(s)	880
VpaK11BI	GGWCC	1 cut(s)	503
XagI	CCTNNNNNAGG	1 cut(s)	1154
XcmI	CCANNNNNNNNNTGG	2 cut(s)	559, 757
XmiI	GTMKAC	1 cut(s)	567
Zsp2I	ATGCAT	1 cut(s)	982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.