Prupe.8G023000_v2.0.a1
NAC Family

Nascent polypeptide-associated complex subunit beta

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0028978
Physical Location & Seq
Reverse (-)
2068628 .. 2070559
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G023000.1

Sequence Viewer

Length: 315 bp
ATGAATTGGGAGAAACTTATGAAGATGGCTGGTGCAGTTCACACTGGTGGAAAGGGTAGCATGAGGAGAAAGGAGAAGACTGTTCACAAGACAACTACCACAGATGACAAAAGGCTTCAGAGCACCATTAAGAGAATAGAGGGGCCAGATAACTTGGACAATTTGATGAAACTGGCAGAGCAGTTCCAGAAGCAAGCGCCTGGTGCTAGTGCTGCTGGTGGAACCACTCCACAAGAGGATGATGATGACGAGGTCCCTGAGCTTGTTGCTGGTGAGAACTTTGAAGCTGCTGCGGAGGAGAAGCAAGCTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04214 map04214
Pfam Domains
Protein Families
NAC

Protein Analysis

105

Amino Acids

11.34

Weight (kDa)

5.18

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028978)

Species Orthologous Gene IDs
prunus_persica Prupe.8G023000_v2.0.a1 Prupe.8G023400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 101
AgsI TTSAA 1 cut(s) 284
AjnI CCWGG 1 cut(s) 199
AleI CACNNNNGTG 1 cut(s) 45
AluBI AGCT 3 cut(s) 262, 287, 308
AluI AGCT 3 cut(s) 262, 287, 308
Alw21I GWGCWC 1 cut(s) 125
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 3 cut(s) 212, 287, 290
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 2 cut(s) 143, 253
AsuHPI GGTGA 1 cut(s) 284
AvaII GGWCC 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 3 cut(s) 199, 274, 277
BccI CCATC 1 cut(s) 19
BciT130I CCWGG 1 cut(s) 201
BfaI CTAG 1 cut(s) 207
BfoI RGCGCY 1 cut(s) 200
BisI GCNGC 3 cut(s) 213, 288, 291
BlsI GCNGC 3 cut(s) 214, 289, 292
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 2 cut(s) 143, 253
BmiI GGNNCC 3 cut(s) 144, 223, 255
BmrFI CCNGG 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 83
Bpu10I CCTNAGC 1 cut(s) 258
Bse1I ACTGG 2 cut(s) 49, 177
BseBI CCWGG 1 cut(s) 201
BseGI GGATG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 2 cut(s) 49, 177
BseRI GAGGAG 2 cut(s) 79, 311
BseXI GCAGC 3 cut(s) 199, 274, 277
BsgI GTGCAG 1 cut(s) 54
BshFI GGCC 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 125
BslFI GGGAC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 125
BspACI CCGC 1 cut(s) 293
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 250
BspLI GGNNCC 3 cut(s) 144, 223, 255
BsrI ACTGG 2 cut(s) 49, 177
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 195, 306
BstDEI CTNAG 1 cut(s) 258
BstF5I GGATG 1 cut(s) 244
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstMWI GCNNNNNNNGC 2 cut(s) 203, 212
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 199
BstV1I GCAGC 3 cut(s) 199, 274, 277
BstV2I GAAGAC 1 cut(s) 83
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 195, 306
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 143, 253
CviAII CATG 1 cut(s) 61
CviJI RGCY 6 cut(s) 29, 115, 145, 262, 287, 308
CviKI_1 RGCY 6 cut(s) 29, 115, 145, 262, 287, 308
DdeI CTNAG 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 199
FaeI CATG 1 cut(s) 64
FaiI YATR 2 cut(s) 20, 62
FaqI GGGAC 1 cut(s) 239
FatI CATG 1 cut(s) 60
Fnu4HI GCNGC 3 cut(s) 213, 288, 291
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 3 cut(s) 213, 288, 291
FspBI CTAG 1 cut(s) 207
GlaI GCGC 1 cut(s) 198
GluI GCNGC 3 cut(s) 213, 288, 291
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 1 cut(s) 145
HhaI GCGC 1 cut(s) 199
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HindIII AAGCTT 1 cut(s) 306
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 2 cut(s) 40, 85
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 2 cut(s) 40, 85
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 212
HpyF3I CTNAG 1 cut(s) 258
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 197
Lsp1109I GCAGC 3 cut(s) 199, 274, 277
MaeI CTAG 1 cut(s) 207
MboII GAAGA 2 cut(s) 34, 88
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 2 cut(s) 4, 160
MnlI CCTC 5 cut(s) 57, 133, 229, 244, 289
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 203, 212
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 3 cut(s) 144, 223, 255
OliI CACNNNNGTG 1 cut(s) 45
PflFI GACNNNGTC 1 cut(s) 251
PkrI GCNGC 3 cut(s) 214, 289, 292
PpuMI RGGWCCY 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 3 cut(s) 144, 223, 255
PspPI GGNCC 2 cut(s) 143, 253
PspPPI RGGWCCY 1 cut(s) 253
PsyI GACNNNGTC 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 45
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 3 cut(s) 213, 288, 291
Sau96I GGNCC 2 cut(s) 143, 253
ScrFI CCNGG 1 cut(s) 201
SduI GDGCHC 1 cut(s) 125
SetI ASST 4 cut(s) 255, 264, 289, 310
SinI GGWCC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 45
Sse9I AATT 2 cut(s) 4, 160
SsiI CCGC 1 cut(s) 293
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 82
TasI AATT 2 cut(s) 4, 160
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 49
TseI GCWGC 3 cut(s) 212, 287, 290
TspDTI ATGAA 3 cut(s) 17, 35, 182
TspRI CASTG 1 cut(s) 49
Tth111I GACNNNGTC 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 253
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.