Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0028987

Physical Location & Seq

Genomic Coordinates Reverse (-)

20364352 .. 20365590

Gene Structure 1239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G227100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

TTAAGATTTGGTGAACAACTTGGACAGATTTGTCTGAAGGCAGATGAAAGAGATGTATACGAGTTCTTCTCAAGGGCTGGCAAGGTCCGCGATGTACGCCTCATTATGGATCGCAATTCAAGACGTTCTAAGGGAGTTGGGTATATTGAGTTTTATGATGCAATGTACGTACCTATGGCGATTGCACTTTCTGGTCAGCCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAGGCTGAGAAGAATCTGGTTCAATCAACATATGTGGTTAGCAGACCAGGTGGGATGATAGGCCCATATTCTGGCGGAGCTAGAAGGCTGTATGTTGGAAATCTCCATACCAATATAAAAGAAGACGATCTCCGCCGGGTGAGTACTTTTCTGACACAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RBM39linker RRM_1

Protein Analysis

133

Amino Acids

14.91

Weight (kDa)

9.51

Isoelectric Point (pI)

55.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028987)

Species	Orthologous Gene IDs
prunus_persica	Prupe.8G227100_v2.0.a1
pyrus_communis	pycom10g10870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	30
AccB7I	CCANNNNNTGG	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	57
AccII	CGCG	1 cut(s)	90
AciI	CCGC	3 cut(s)	88, 309, 367
AclWI	GGATC	1 cut(s)	117
AcuI	CTGAAG	1 cut(s)	56
AfaI	GTAC	4 cut(s)	96, 167, 171, 379
AfiI	CCNNNNNNNGG	3 cut(s)	106, 206, 305
AgsI	TTSAA	2 cut(s)	120, 257
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
AlwI	GGATC	1 cut(s)	117
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	295
AspS9I	GGNCC	2 cut(s)	85, 296
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	3 cut(s)	23, 235, 385
AvaII	GGWCC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	363
BccI	CCATC	2 cut(s)	214, 238
BciT130I	CCWGG	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	371
BfaI	CTAG	1 cut(s)	315
BmcAI	AGTACT	1 cut(s)	379
Bme1390I	CCNGG	2 cut(s)	282, 371
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	2 cut(s)	85, 296
BmrFI	CCNGG	2 cut(s)	282, 371
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	363
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpuEI	CTTGAG	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	371
BsaAI	YACGTR	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 206, 305
Bse1I	ACTGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	3 cut(s)	106, 206, 305
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	370
BslI	CCNNNNNNNGG	3 cut(s)	106, 206, 305
BsnI	GGCC	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	109, 361
BspACI	CCGC	3 cut(s)	88, 309, 367
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	90
BspPI	GGATC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	215
BssMI	GATC	2 cut(s)	109, 361
BssNAI	GTATAC	1 cut(s)	58
Bst1107I	GTATAC	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	393
Bst6I	CTCTTC	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	129, 240
BstF5I	GGATG	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	2 cut(s)	112, 364
BstMBI	GATC	2 cut(s)	109, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 96
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	280, 369
BstSNI	TACGTA	1 cut(s)	169
BstUI	CGCG	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	363
BstZ17I	GTATAC	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	297
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	85, 296
CsiI	ACCWGGT	1 cut(s)	280
Csp6I	GTAC	4 cut(s)	95, 166, 170, 378
CspCI	CAANNNNNGTGG	2 cut(s)	249, 284
CviJI	RGCY	7 cut(s)	77, 199, 229, 239, 297, 314, 322
CviKI_1	RGCY	7 cut(s)	77, 199, 229, 239, 297, 314, 322
CviQI	GTAC	4 cut(s)	95, 166, 170, 378
DdeI	CTNAG	2 cut(s)	129, 240
DpnI	GATC	2 cut(s)	111, 363
DpnII	GATC	2 cut(s)	109, 361
DrdI	GACNNNNNNGTC	1 cut(s)	30
DseDI	GACNNNNNNGTC	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
EciI	GGCGGA	2 cut(s)	324, 356
Eco105I	TACGTA	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	280
FauNDI	CATATG	1 cut(s)	265
FblI	GTMKAC	1 cut(s)	57
FokI	GGATG	1 cut(s)	301
FspBI	CTAG	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	1 cut(s)	370
HincII	GTYRAC	1 cut(s)	212
HindII	GTYRAC	1 cut(s)	212
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	3 cut(s)	23, 235, 385
Hpy166II	GTNNAC	3 cut(s)	14, 58, 212
Hpy188I	TCNGA	3 cut(s)	36, 235, 387
Hpy188III	TCNNGA	1 cut(s)	120
Hpy8I	GTNNAC	3 cut(s)	14, 58, 212
HpyAV	CCTTC	2 cut(s)	31, 312
HpyCH4III	ACNGT	1 cut(s)	393
HpyCH4IV	ACGT	2 cut(s)	124, 168
HpyCH4V	TGCA	2 cut(s)	161, 185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 96
HpyF3I	CTNAG	2 cut(s)	129, 240
HpySE526I	ACGT	2 cut(s)	124, 168
Kzo9I	GATC	2 cut(s)	109, 361
LmnI	GCTCC	1 cut(s)	311
LpnPI	CCDG	8 cut(s)	63, 177, 228, 236, 267, 291, 294, 383
LweI	GCATC	1 cut(s)	148
MabI	ACCWGGT	1 cut(s)	280
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	2 cut(s)	124, 168
MalI	GATC	2 cut(s)	111, 363
MboI	GATC	2 cut(s)	109, 361
MboII	GAAGA	4 cut(s)	58, 194, 256, 368
MluCI	AATT	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	3 cut(s)	110, 210, 229
MseI	TTAA	1 cut(s)	2
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	2 cut(s)	282, 371
MvaI	CCWGG	1 cut(s)	282
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	87, 96
NciI	CCSGG	1 cut(s)	371
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	2 cut(s)	109, 361
PfeI	GAWTC	1 cut(s)	247
PflMI	CCANNNNNTGG	1 cut(s)	305
Ppu21I	YACGTR	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspPI	GGNCC	2 cut(s)	85, 296
PstNI	CAGNNNCTG	1 cut(s)	239
RsaI	GTAC	4 cut(s)	96, 167, 171, 379
RsaNI	GTAC	4 cut(s)	95, 166, 170, 378
SaqAI	TTAA	1 cut(s)	2
Sau3AI	GATC	2 cut(s)	109, 361
Sau96I	GGNCC	2 cut(s)	85, 296
ScaI	AGTACT	1 cut(s)	379
ScrFI	CCNGG	2 cut(s)	282, 371
SetI	ASST	6 cut(s)	87, 127, 171, 175, 286, 316
SexAI	ACCWGGT	1 cut(s)	280
SfaNI	GCATC	1 cut(s)	148
SinI	GGWCC	1 cut(s)	85
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
SnaBI	TACGTA	1 cut(s)	169
Sse9I	AATT	1 cut(s)	115
SsiI	CCGC	3 cut(s)	88, 309, 367
SspMI	CTAG	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	280, 369
TaaI	ACNGT	1 cut(s)	393
TaiI	ACGT	2 cut(s)	127, 171
TasI	AATT	1 cut(s)	115
TatI	WGTACW	1 cut(s)	377
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	2
Tru9I	TTAA	1 cut(s)	2
TscAI	CASTG	1 cut(s)	222
TspDTI	ATGAA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	222
Van91I	CCANNNNNTGG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	57
XspI	CTAG	1 cut(s)	315
ZrmI	AGTACT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.