Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0028982

Physical Location & Seq

Genomic Coordinates Reverse (-)

20935821 .. 20939169

Gene Structure 3349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G237000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGACAGCGACGAAGCTGGAGTTGTGGATTACGAGTTCATCGACAACGACTCCGACGATTCCAATGATGTCTCCTCACATCGATACCAGGTTTATGTGATTGGTGAGGAAGGTATCTTGAAGGAGCTTGAGCTTGCTGGATATCAATACATTGGTGGACCATGCACTTGTTACATGTATTGCATTTGGTCTTCTCTGGTGGCAGTTGTCATTAATCAATGTTTATGTGATGGAAAGTATGTGACACTCTGTCTACGTGAAAACCCTGGAAGTCTTTTCATTGCAACAAATTGTGATGCTGTCACTCGTCTCAAAGATGCTCAGGAATGGGCAGCTACTATAATTTATACTCAACTTCAGGTGGACCGTGGTGGTTCTATGGTTGGCGCTATCCATGGATGTATTCAACGTGAGCCGCTGGTTGTGGGAAAACCCTCAACATTTACGATGGACTACTTAGCAAACGAATTTGCATGGTTGGGATACACATTAGATACTGATATTCTGTTTGGACAAAATGGTGGTTACAAAACTTTTCTTGTTCTCTCAGGTGTCACCACTTTATCAGTGCTTCAGAGTCCTAACAACTCCATACAACCAGATTTTTACACGAACAAGATTTCAGACTTTTTGTCTCTCAAGGCTGCAACTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

219

Amino Acids

24.04

Weight (kDa)

4.24

Isoelectric Point (pI)

24.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028982)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G318300_v2.0.a1 Prupe.8G237000_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	253
AciI	CCGC	1 cut(s)	416
AcsI	RAATTY	1 cut(s)	467
AcuI	CTGAAG	2 cut(s)	341, 557
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	121, 407
AhdI	GACNNNNNGTC	2 cut(s)	249, 631
AjnI	CCWGG	2 cut(s)	87, 265
AloI	GAACNNNNNNTCC	2 cut(s)	20, 52
AluBI	AGCT	4 cut(s)	17, 127, 133, 335
AluI	AGCT	4 cut(s)	17, 127, 133, 335
Alw26I	GTCTC	3 cut(s)	76, 314, 639
ApeKI	GCWGC	2 cut(s)	332, 644
ApoI	RAATTY	1 cut(s)	467
AseI	ATTAAT	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	389
AspS9I	GGNCC	2 cut(s)	158, 364
AsuHPI	GGTGA	2 cut(s)	116, 547
AvaII	GGWCC	2 cut(s)	158, 364
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	344, 631
BccI	CCATC	2 cut(s)	224, 442
BciT130I	CCWGG	2 cut(s)	89, 267
BciVI	GTATCC	1 cut(s)	476
BcoDI	GTCTC	3 cut(s)	76, 314, 639
BfoI	RGCGCY	1 cut(s)	390
BfuI	GTATCC	1 cut(s)	476
BisI	GCNGC	3 cut(s)	333, 416, 645
BlsI	GCNGC	3 cut(s)	334, 417, 646
Bme1390I	CCNGG	2 cut(s)	89, 267
Bme18I	GGWCC	2 cut(s)	158, 364
BmeRI	GACNNNNNGTC	2 cut(s)	249, 631
BmgT120I	GGNCC	2 cut(s)	158, 364
BmrFI	CCNGG	2 cut(s)	89, 267
BmsI	GCATC	2 cut(s)	286, 307
BpiI	GAAGAC	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	39
Bpu10I	CCTNAGC	1 cut(s)	321
BpuEI	CTTGAG	2 cut(s)	149, 623
Bsa29I	ATCGAT	1 cut(s)	82
BsaAI	YACGTR	1 cut(s)	257
BsaJI	CCNNGG	3 cut(s)	265, 367, 394
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	89, 267
BseCI	ATCGAT	1 cut(s)	82
BseDI	CCNNGG	3 cut(s)	265, 367, 394
BseGI	GGATG	1 cut(s)	404
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	335, 561
BseRI	GAGGAG	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	344, 631
BshVI	ATCGAT	1 cut(s)	82
BsmAI	GTCTC	3 cut(s)	76, 314, 639
BsmBI	CGTCTC	1 cut(s)	314
Bsp19I	CCATGG	1 cut(s)	394
BspACI	CCGC	1 cut(s)	416
BspCNI	CTCAG	2 cut(s)	334, 560
BspDI	ATCGAT	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	279
BssECI	CCNNGG	3 cut(s)	265, 367, 394
BssT1I	CCWWGG	1 cut(s)	394
Bst2UI	CCWGG	2 cut(s)	89, 267
Bst4CI	ACNGT	2 cut(s)	368, 652
BstBAI	YACGTR	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	3 cut(s)	321, 457, 547
BstDSI	CCRYGG	2 cut(s)	367, 394
BstF5I	GGATG	1 cut(s)	404
BstH2I	RGCGCY	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	389
BstMAI	GTCTC	3 cut(s)	76, 314, 639
BstNI	CCWGG	2 cut(s)	89, 267
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	2 cut(s)	87, 265
BstV1I	GCAGC	2 cut(s)	344, 631
BstV2I	GAAGAC	1 cut(s)	183
Bsu15I	ATCGAT	1 cut(s)	82
BsuI	GTATCC	1 cut(s)	476
BsuTUI	ATCGAT	1 cut(s)	82
BtgI	CCRYGG	2 cut(s)	367, 394
BtsCI	GGATG	1 cut(s)	404
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	1 cut(s)	135
CfoI	GCGC	1 cut(s)	389
Cfr13I	GGNCC	2 cut(s)	158, 364
ClaI	ATCGAT	1 cut(s)	82
CsiI	ACCWGGT	1 cut(s)	87
CviAII	CATG	4 cut(s)	162, 175, 395, 474
CviJI	RGCY	6 cut(s)	17, 127, 133, 335, 415, 644
CviKI_1	RGCY	6 cut(s)	17, 127, 133, 335, 415, 644
DdeI	CTNAG	3 cut(s)	321, 457, 547
DriI	GACNNNNNGTC	2 cut(s)	249, 631
Eam1105I	GACNNNNNGTC	2 cut(s)	249, 631
Eco130I	CCWWGG	1 cut(s)	394
Eco32I	GATATC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	158, 364
Eco57I	CTGAAG	2 cut(s)	341, 557
EcoRII	CCWGG	2 cut(s)	87, 265
EcoRV	GATATC	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	394
Esp3I	CGTCTC	1 cut(s)	314
FaeI	CATG	4 cut(s)	165, 178, 398, 477
FatI	CATG	4 cut(s)	161, 174, 394, 473
FblI	GTMKAC	1 cut(s)	253
Fnu4HI	GCNGC	3 cut(s)	333, 416, 645
FokI	GGATG	1 cut(s)	411
Fsp4HI	GCNGC	3 cut(s)	333, 416, 645
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	3 cut(s)	333, 416, 645
GsuI	CTGGAG	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	390
HhaI	GCGC	1 cut(s)	389
Hin1II	CATG	4 cut(s)	165, 178, 398, 477
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HinfI	GANTC	3 cut(s)	50, 59, 577
HphI	GGTGA	2 cut(s)	116, 547
Hpy166II	GTNNAC	3 cut(s)	158, 254, 364
Hpy188I	TCNGA	3 cut(s)	55, 576, 625
Hpy188III	TCNNGA	2 cut(s)	118, 323
Hpy8I	GTNNAC	3 cut(s)	158, 254, 364
Hpy99I	CGWCG	2 cut(s)	14, 59
HpyAV	CCTTC	2 cut(s)	104, 115
HpyCH4III	ACNGT	2 cut(s)	368, 652
HpyCH4IV	ACGT	2 cut(s)	256, 409
HpyCH4V	TGCA	5 cut(s)	165, 183, 284, 473, 647
HpyF3I	CTNAG	3 cut(s)	321, 457, 547
HpySE526I	ACGT	2 cut(s)	256, 409
Hsp92II	CATG	4 cut(s)	165, 178, 398, 477
HspAI	GCGC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	2 cut(s)	344, 631
LweI	GCATC	2 cut(s)	286, 307
MabI	ACCWGGT	1 cut(s)	87
MaeII	ACGT	2 cut(s)	256, 409
MaeIII	GTNAC	5 cut(s)	170, 241, 301, 524, 553
MboII	GAAGA	1 cut(s)	183
MluCI	AATT	3 cut(s)	289, 342, 467
MlyI	GAGTC	2 cut(s)	44, 586
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	3 cut(s)	85, 100, 445
MseI	TTAA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	418
MspR9I	CCNGG	2 cut(s)	89, 267
MvaI	CCWGG	2 cut(s)	89, 267
NcoI	CCATGG	1 cut(s)	394
NlaIII	CATG	4 cut(s)	165, 178, 398, 477
NmuCI	GTSAC	3 cut(s)	241, 301, 553
NspI	RCATGY	1 cut(s)	178
PciI	ACATGT	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 54
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	3 cut(s)	334, 417, 646
PleI	GAGTC	2 cut(s)	44, 585
PpsI	GAGTC	2 cut(s)	44, 585
Ppu21I	YACGTR	1 cut(s)	257
PscI	ACATGT	1 cut(s)	174
PshBI	ATTAAT	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	87, 265
PspGI	CCWGG	2 cut(s)	87, 265
PspPI	GGNCC	2 cut(s)	158, 364
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	3 cut(s)	333, 416, 645
Sau96I	GGNCC	2 cut(s)	158, 364
SchI	GAGTC	2 cut(s)	44, 586
ScrFI	CCNGG	2 cut(s)	89, 267
SexAI	ACCWGGT	1 cut(s)	87
SfaNI	GCATC	2 cut(s)	286, 307
SinI	GGWCC	2 cut(s)	158, 364
SmlI	CTYRAG	2 cut(s)	128, 638
SmoI	CTYRAG	2 cut(s)	128, 638
Sse9I	AATT	3 cut(s)	289, 342, 467
SsiI	CCGC	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	87, 265
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	2 cut(s)	368, 652
TaiI	ACGT	2 cut(s)	259, 412
TaqI	TCGA	2 cut(s)	42, 82
TasI	AATT	3 cut(s)	289, 342, 467
TauI	GCSGC	1 cut(s)	418
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	573
TseFI	GTSAC	3 cut(s)	241, 301, 553
TseI	GCWGC	2 cut(s)	332, 644
Tsp45I	GTSAC	3 cut(s)	241, 301, 553
TspDTI	ATGAA	2 cut(s)	28, 268
TspRI	CASTG	1 cut(s)	573
VpaK11BI	GGWCC	2 cut(s)	158, 364
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	1 cut(s)	467
XceI	RCATGY	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.