Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0028469

Physical Location & Seq

Genomic Coordinates Forward (+)

1949676 .. 1950744

Gene Structure 1069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGTCTTGGGAATCTGGGTAGTCGGCCCACTTGGCTGACTGTGTTTTTGGGTTTGCTGAGTTGGATAGTTGCTATAAGGATGCATTTGAAGATTCAGAGTCTTCGACTTCTTCTTCTTCAGTATGGAGCATCACAGCTTCTTCAAGTAATTGTTCGTGAATTTTTGGAAGACATGACTGTTCCTTTGAGGGATAAAGATGGACTAATGTCTAATAATGATTGTTCCGGGATGGCTAGCAGTGCTGGCCGTGCTGGTTGTGCCGGAATGACTGGAGGTAGAGTAATGGGAAATTCGGTAGACTTCACCTATTTCATAATTCCACTTCATGATCCATGGGACTTTGTACTTGGCCATGAATATTGTGAGAAGTGTAATTCTGTAGTTGAATCAGCTTCTGTCAAATTTTTGTTGGAAACTGGTGGATGGGACCTGCATAAGTTCTTTTGTCAATCTAGAACTCTTGTCAAAATTAATAAGTCATCAATGACTAAAATCTTCTATTTGATAGAGAAAGATGTTAGTCCATGCTTCAATGTAATCAAAGTAATTATTTGGCTTTGTAAAGGGGGATTCCCCAATCTGATTCTGTTAAGAACCGGCCAATGTAAAGAGAATGGTAAAGAATTTTGTTTTCATGGGTTTTGCTGTAGAGAGAATATTTCAGCATTTTGTGTGACTCTGTGGGGTGATAATGAAAGTTGGGTGGAAAGATGGAAAAAGATATTGAAAAGATATTCACTGGGATTTTTCTTAACGTATGGTGATGTTTTGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009987 GO:0010493 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0031090 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046920 GO:0070085 GO:0071704 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_10

Protein Analysis

260

Amino Acids

29.33

Weight (kDa)

8.57

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028469)

Species	Orthologous Gene IDs
malus_domestica	MD09G1197200.v1.1
pyrus_communis	pycom01g02400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	441
AccI	GTMKAC	1 cut(s)	300
AclWI	GGATC	1 cut(s)	326
AcoI	YGGCCR	3 cut(s)	247, 352, 601
AcsI	RAATTY	4 cut(s)	161, 292, 404, 626
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	1 cut(s)	348
AgsI	TTSAA	5 cut(s)	91, 146, 389, 535, 730
AluBI	AGCT	2 cut(s)	139, 395
AluI	AGCT	2 cut(s)	139, 395
AlwI	GGATC	1 cut(s)	326
AlwNI	CAGNNNCTG	1 cut(s)	398
AoxI	GGCC	4 cut(s)	26, 247, 352, 601
ApoI	RAATTY	4 cut(s)	161, 292, 404, 626
ArsI	GACNNNNNNTTYG	4 cut(s)	31, 63, 169, 201
AseI	ATTAAT	1 cut(s)	474
AspS9I	GGNCC	2 cut(s)	27, 430
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	3 cut(s)	298, 701, 776
AsuNHI	GCTAGC	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	430
BalI	TGGCCA	1 cut(s)	354
BbsI	GAAGAC	2 cut(s)	95, 177
BccI	CCATC	4 cut(s)	194, 226, 420, 708
BceAI	ACGGC	1 cut(s)	234
BcnI	CCSGG	1 cut(s)	229
BfaI	CTAG	2 cut(s)	237, 456
BfmI	CTRYAG	2 cut(s)	381, 649
BfuAI	ACCTGC	1 cut(s)	441
BglI	GCCNNNNNGGC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	2 cut(s)	27, 430
BmiI	GGNNCC	1 cut(s)	431
BmrFI	CCNGG	1 cut(s)	229
BmrI	ACTGGG	1 cut(s)	752
BmsI	GCATC	2 cut(s)	72, 140
BmtI	GCTAGC	1 cut(s)	240
BmuI	ACTGGG	1 cut(s)	752
BoxI	GACNNNNGTC	1 cut(s)	208
BpiI	GAAGAC	2 cut(s)	95, 177
BpmI	CTGGAG	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	229
BsaJI	CCNNGG	1 cut(s)	335
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bse118I	RCCGGY	1 cut(s)	599
Bse1I	ACTGG	3 cut(s)	277, 424, 747
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	3 cut(s)	87, 237, 431
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	3 cut(s)	277, 424, 747
BshFI	GGCC	4 cut(s)	28, 249, 354, 603
BsiSI	CCGG	3 cut(s)	228, 264, 600
BslFI	GGGAC	2 cut(s)	353, 443
BsmFI	GGGAC	2 cut(s)	353, 443
BsnI	GGCC	4 cut(s)	28, 249, 354, 603
Bsp143I	GATC	1 cut(s)	331
Bsp19I	CCATGG	1 cut(s)	335
BspANI	GGCC	4 cut(s)	28, 249, 354, 603
BspCNI	CTCAG	1 cut(s)	51
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	431
BspMI	ACCTGC	1 cut(s)	441
BspOI	GCTAGC	1 cut(s)	240
BspPI	GGATC	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	599
BsrI	ACTGG	3 cut(s)	277, 424, 747
BssAI	RCCGGY	1 cut(s)	599
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	335
Bst4CI	ACNGT	2 cut(s)	43, 181
BstC8I	GCNNGC	2 cut(s)	238, 247
BstDEI	CTNAG	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	335
BstF5I	GGATG	3 cut(s)	87, 237, 431
BstKTI	GATC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 242, 246, 251, 260
BstPAI	GACNNNNGTC	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	227
BstSFI	CTRYAG	2 cut(s)	381, 649
BstV2I	GAAGAC	2 cut(s)	95, 177
BsuRI	GGCC	4 cut(s)	28, 249, 354, 603
BtgI	CCRYGG	1 cut(s)	335
BtsCI	GGATG	3 cut(s)	87, 237, 431
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	247, 740
BveI	ACCTGC	1 cut(s)	441
Cac8I	GCNNGC	2 cut(s)	238, 247
CaiI	CAGNNNCTG	1 cut(s)	398
CciI	TCATGA	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	599
Cfr13I	GGNCC	2 cut(s)	27, 430
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	6 cut(s)	175, 329, 336, 356, 528, 638
CviJI	RGCY	9 cut(s)	28, 37, 139, 236, 249, 354, 395, 559, 603
CviKI_1	RGCY	9 cut(s)	28, 37, 139, 236, 249, 354, 395, 559, 603
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
EaeI	YGGCCR	3 cut(s)	247, 352, 601
Eco130I	CCWWGG	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	335
EcoT22I	ATGCAT	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	6 cut(s)	178, 332, 339, 359, 531, 641
FaqI	GGGAC	2 cut(s)	353, 443
FatI	CATG	6 cut(s)	174, 328, 335, 355, 527, 637
FblI	GTMKAC	1 cut(s)	300
FokI	GGATG	3 cut(s)	94, 244, 438
FspBI	CTAG	2 cut(s)	237, 456
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	4 cut(s)	28, 249, 354, 603
HapII	CCGG	3 cut(s)	228, 264, 600
Hin1II	CATG	6 cut(s)	178, 332, 339, 359, 531, 641
HinfI	GANTC	7 cut(s)	13, 94, 100, 389, 573, 586, 679
HpaII	CCGG	3 cut(s)	228, 264, 600
HphI	GGTGA	3 cut(s)	298, 701, 776
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	2 cut(s)	99, 585
Hpy188III	TCNNGA	3 cut(s)	158, 329, 456
Hpy8I	GTNNAC	1 cut(s)	301
HpyCH4III	ACNGT	2 cut(s)	43, 181
HpyCH4IV	ACGT	1 cut(s)	758
HpyCH4V	TGCA	2 cut(s)	85, 436
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 242, 246, 251, 260
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	1 cut(s)	758
Hsp92II	CATG	6 cut(s)	178, 332, 339, 359, 531, 641
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	1 cut(s)	128
LweI	GCATC	2 cut(s)	72, 140
MaeI	CTAG	2 cut(s)	237, 456
MaeII	ACGT	1 cut(s)	758
MaeIII	GTNAC	1 cut(s)	676
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	8 cut(s)	95, 103, 104, 107, 110, 134, 182, 490
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	9 cut(s)	150, 161, 292, 318, 376, 404, 471, 549, 626
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	2 cut(s)	109, 673
MmeI	TCCRAC	2 cut(s)	44, 393
MnlI	CCTC	2 cut(s)	183, 269
Mox20I	TGGCCA	1 cut(s)	354
Mph1103I	ATGCAT	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	3 cut(s)	474, 593, 755
Msp20I	TGGCCA	1 cut(s)	354
MspI	CCGG	3 cut(s)	228, 264, 600
MspR9I	CCNGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	5 cut(s)	34, 242, 246, 251, 260
NciI	CCSGG	1 cut(s)	229
NcoI	CCATGG	1 cut(s)	335
NdeII	GATC	1 cut(s)	331
NheI	GCTAGC	1 cut(s)	236
NlaIII	CATG	6 cut(s)	178, 332, 339, 359, 531, 641
NlaIV	GGNNCC	1 cut(s)	431
NmuCI	GTSAC	1 cut(s)	676
NsiI	ATGCAT	1 cut(s)	87
PagI	TCATGA	1 cut(s)	328
PfeI	GAWTC	5 cut(s)	13, 94, 389, 573, 586
PfoI	TCCNGGA	1 cut(s)	227
PleI	GAGTC	2 cut(s)	108, 673
PpsI	GAGTC	2 cut(s)	108, 673
PpuMI	RGGWCCY	1 cut(s)	430
PshAI	GACNNNNGTC	1 cut(s)	208
PshBI	ATTAAT	1 cut(s)	474
Psp5II	RGGWCCY	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	2 cut(s)	27, 430
PspPPI	RGGWCCY	1 cut(s)	430
PstNI	CAGNNNCTG	1 cut(s)	398
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
SaqAI	TTAA	3 cut(s)	474, 593, 755
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	2 cut(s)	27, 430
SchI	GAGTC	2 cut(s)	109, 673
ScrFI	CCNGG	1 cut(s)	229
SetI	ASST	6 cut(s)	141, 280, 311, 397, 435, 761
SfaNI	GCATC	2 cut(s)	72, 140
SfcI	CTRYAG	2 cut(s)	381, 649
SinI	GGWCC	1 cut(s)	430
Sse9I	AATT	9 cut(s)	150, 161, 292, 318, 376, 404, 471, 549, 626
SspI	AATATT	2 cut(s)	362, 661
SspMI	CTAG	2 cut(s)	237, 456
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	2 cut(s)	43, 181
TaiI	ACGT	1 cut(s)	761
TaqI	TCGA	1 cut(s)	106
TasI	AATT	9 cut(s)	150, 161, 292, 318, 376, 404, 471, 549, 626
TatI	WGTACW	1 cut(s)	346
TfiI	GAWTC	5 cut(s)	13, 94, 389, 573, 586
Tru1I	TTAA	3 cut(s)	474, 593, 755
Tru9I	TTAA	3 cut(s)	474, 593, 755
TscAI	CASTG	2 cut(s)	247, 747
TseFI	GTSAC	1 cut(s)	676
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	5 cut(s)	304, 317, 372, 626, 711
TspRI	CASTG	2 cut(s)	247, 747
VpaK11BI	GGWCC	1 cut(s)	430
VspI	ATTAAT	1 cut(s)	474
XapI	RAATTY	4 cut(s)	161, 292, 404, 626
XbaI	TCTAGA	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	2 cut(s)	237, 456
Zsp2I	ATGCAT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.