pycom01g02630

Belongs to the actin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0029185
Physical Location & Seq
Forward (+)
2129035 .. 2130749
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 795 bp
ATGATTAAGTCTTATTTTAATTTTGTCACATTATATTATAAAATTTTAAGATTATACTATTCATCCAACTATTCAACAATTATTTTCTGTTTAAGTGAGAGTTGCGACCTAAGCGGGTTTAAGCAGACTAGCCTGGTGATTAATTGGTATGATGGTCAGCCTTTTAAAATAGTGTTTGAAAACAAAATACCCCAAATTTACCCCCAAATAGAATTCAAAAAAAAAAAAAAAAAAAGAAAAAAAAGAAAAAGAAAAAAAAAAAAGCAAATATTCAAGTGCTTGGTAATTTGGTCCCAATTTCATGTGCATTTCAAAATCCGGAGCTATATATACCCTCTCACATTTCTAGCTCACCCTAATTCTGCTCAATTTCCACCATCTCTGACAGCCTTGAAGAAACACAGCGACATTCAAGCCTTCGTTTTCGGCTTGATCTTCTTCCCGTCGCCGCCGTCTTCGATCGTCTTCGTTCGTCTTCGTCTTCCCCTTCAAGGTTTGTTAAAGATGGCCGATGGCGAGGACATTCAACCCCTCGTTTGCGACAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTGTTTCCTAGTATTGTTGGTCGTCCACGACACACAGGTGTCATGGTTGGTATGGGTCAGAAGGATGCCTATGTAGGTGATGAAGCACAGTCGAAAAGAGGTATCCTTACCTTGAAGTATCCCATTGAGCATGGTATAGTGAGCAACTGGGATGACATGGTTCCAACAGAAGATCTGGCATCATACTTTCTACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Actin

Protein Analysis

265

Amino Acids

30.33

Weight (kDa)

9.71

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Actin PF00022 173 - 252 3.7e-22 Actin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029185)

Species Orthologous Gene IDs
pyrus_communis pycom01g02630 pycom03g07820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 39
AccIII TCCGGA 1 cut(s) 318
AciI CCGC 2 cut(s) 114, 449
AcoI YGGCCR 1 cut(s) 507
AcsI RAATTY 3 cut(s) 42, 195, 212
AfiI CCNNNNNNNGG 1 cut(s) 491
AjnI CCWGG 2 cut(s) 132, 590
AleI CACNNNNGTG 1 cut(s) 633
AluBI AGCT 2 cut(s) 324, 350
AluI AGCT 2 cut(s) 324, 350
Aor13HI TCCGGA 1 cut(s) 318
AoxI GGCC 1 cut(s) 507
ApoI RAATTY 3 cut(s) 42, 195, 212
AseI ATTAAT 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 291
AsuHPI GGTGA 5 cut(s) 148, 344, 571, 590, 686
AvaII GGWCC 1 cut(s) 291
BbsI GAAGAC 4 cut(s) 447, 457, 467, 473
BccI CCATC 4 cut(s) 146, 385, 499, 506
BceAI ACGGC 1 cut(s) 436
BciT130I CCWGG 2 cut(s) 134, 592
BciVI GTATCC 2 cut(s) 710, 726
BfaI CTAG 3 cut(s) 129, 347, 606
BfuI GTATCC 2 cut(s) 710, 726
BglII AGATCT 1 cut(s) 769
BisI GCNGC 1 cut(s) 449
BlsI GCNGC 1 cut(s) 450
Bme1390I CCNGG 2 cut(s) 134, 592
Bme18I GGWCC 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 2 cut(s) 293, 759
BmrFI CCNGG 2 cut(s) 134, 592
BmrI ACTGGG 1 cut(s) 754
BmsI GCATC 3 cut(s) 574, 652, 785
BmuI ACTGGG 1 cut(s) 754
BpiI GAAGAC 4 cut(s) 447, 457, 467, 473
Bpu10I CCTNAGC 1 cut(s) 110
BsaJI CCNNGG 2 cut(s) 590, 591
BsaWI WCCGGW 1 cut(s) 318
Bsc4I CCNNNNNNNGG 1 cut(s) 491
Bse1I ACTGG 2 cut(s) 556, 749
BseAI TCCGGA 1 cut(s) 318
BseBI CCWGG 2 cut(s) 134, 592
BseDI CCNNGG 2 cut(s) 590, 591
BseGI GGATG 3 cut(s) 62, 667, 754
BseLI CCNNNNNNNGG 1 cut(s) 491
BseNI ACTGG 2 cut(s) 556, 749
Bsh1285I CGRYCG 1 cut(s) 462
BshFI GGCC 1 cut(s) 509
BsiEI CGRYCG 1 cut(s) 462
BsiSI CCGG 1 cut(s) 319
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 1 cut(s) 491
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 1 cut(s) 509
Bsp13I TCCGGA 1 cut(s) 318
Bsp143I GATC 3 cut(s) 432, 459, 769
BspACI CCGC 2 cut(s) 114, 449
BspANI GGCC 1 cut(s) 509
BspEI TCCGGA 1 cut(s) 318
BspLI GGNNCC 2 cut(s) 293, 759
BsrI ACTGG 2 cut(s) 556, 749
BssECI CCNNGG 2 cut(s) 590, 591
BssMI GATC 3 cut(s) 432, 459, 769
Bst2UI CCWGG 2 cut(s) 134, 592
Bst4CI ACNGT 1 cut(s) 687
BstDEI CTNAG 1 cut(s) 110
BstF5I GGATG 3 cut(s) 62, 667, 754
BstKTI GATC 3 cut(s) 435, 462, 772
BstMBI GATC 3 cut(s) 432, 459, 769
BstMCI CGRYCG 1 cut(s) 462
BstMWI GCNNNNNNNGC 3 cut(s) 111, 572, 593
BstNI CCWGG 2 cut(s) 134, 592
BstSCI CCNGG 2 cut(s) 132, 590
BstV2I GAAGAC 4 cut(s) 447, 457, 467, 473
BstX2I RGATCY 1 cut(s) 769
BstYI RGATCY 1 cut(s) 769
BsuI GTATCC 2 cut(s) 710, 726
BsuRI GGCC 1 cut(s) 509
BtsCI GGATG 3 cut(s) 62, 667, 754
Cfr13I GGNCC 1 cut(s) 291
CviAII CATG 4 cut(s) 302, 640, 728, 754
DdeI CTNAG 1 cut(s) 110
DpnI GATC 3 cut(s) 434, 461, 771
DpnII GATC 3 cut(s) 432, 459, 769
DraI TTTAAA 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 507
Eco47I GGWCC 1 cut(s) 291
EcoRI GAATTC 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 132, 590
FaeI CATG 4 cut(s) 305, 643, 731, 757
FaqI GGGAC 1 cut(s) 277
FatI CATG 4 cut(s) 301, 639, 727, 753
FauI CCCGC 1 cut(s) 107
Fnu4HI GCNGC 1 cut(s) 449
FokI GGATG 3 cut(s) 49, 674, 761
Fsp4HI GCNGC 1 cut(s) 449
FspBI CTAG 3 cut(s) 129, 347, 606
GluI GCNGC 1 cut(s) 449
HaeIII GGCC 1 cut(s) 509
HapII CCGG 1 cut(s) 319
Hin1II CATG 4 cut(s) 305, 643, 731, 757
HpaII CCGG 1 cut(s) 319
HphI GGTGA 5 cut(s) 148, 344, 571, 590, 686
Hpy166II GTNNAC 1 cut(s) 623
Hpy188I TCNGA 2 cut(s) 384, 657
Hpy188III TCNNGA 1 cut(s) 319
Hpy8I GTNNAC 1 cut(s) 623
Hpy99I CGWCG 1 cut(s) 448
HpyAV CCTTC 4 cut(s) 427, 497, 556, 652
HpyCH4III ACNGT 1 cut(s) 687
HpyCH4V TGCA 1 cut(s) 307
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 572, 593
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 4 cut(s) 305, 643, 731, 757
Kpn2I TCCGGA 1 cut(s) 318
Kzo9I GATC 3 cut(s) 432, 459, 769
LmnI GCTCC 2 cut(s) 321, 592
LweI GCATC 3 cut(s) 574, 652, 785
MaeI CTAG 3 cut(s) 129, 347, 606
MaeIII GTNAC 1 cut(s) 25
MalI GATC 3 cut(s) 434, 461, 771
MboI GATC 3 cut(s) 432, 459, 769
MboII GAAGA 8 cut(s) 406, 427, 430, 447, 457, 467, 473, 779
MflI RGATCY 1 cut(s) 769
MmeI TCCRAC 2 cut(s) 90, 785
MnlI CCTC 4 cut(s) 345, 511, 542, 689
MroI TCCGGA 1 cut(s) 318
MseI TTAA 8 cut(s) 6, 18, 47, 92, 120, 141, 165, 500
MslI CAYNNNNRTG 1 cut(s) 633
MspI CCGG 1 cut(s) 319
MspR9I CCNGG 2 cut(s) 134, 592
MvaI CCWGG 2 cut(s) 134, 592
MwoI GCNNNNNNNGC 3 cut(s) 111, 572, 593
NdeII GATC 3 cut(s) 432, 459, 769
NlaIII CATG 4 cut(s) 305, 643, 731, 757
NlaIV GGNNCC 2 cut(s) 293, 759
NmuCI GTSAC 1 cut(s) 25
OliI CACNNNNGTG 1 cut(s) 633
PasI CCCWGGG 1 cut(s) 591
PkrI GCNGC 1 cut(s) 450
Ple19I CGATCG 1 cut(s) 462
PshBI ATTAAT 1 cut(s) 141
PsiI TTATAA 1 cut(s) 39
Psp6I CCWGG 2 cut(s) 132, 590
PspGI CCWGG 2 cut(s) 132, 590
PspN4I GGNNCC 2 cut(s) 293, 759
PspPI GGNCC 1 cut(s) 291
PsuI RGATCY 1 cut(s) 769
PvuI CGATCG 1 cut(s) 462
RseI CAYNNNNRTG 1 cut(s) 633
SaqAI TTAA 8 cut(s) 6, 18, 47, 92, 120, 141, 165, 500
SatI GCNGC 1 cut(s) 449
Sau3AI GATC 3 cut(s) 432, 459, 769
Sau96I GGNCC 1 cut(s) 291
ScrFI CCNGG 2 cut(s) 134, 592
SetI ASST 8 cut(s) 111, 326, 352, 496, 637, 676, 700, 710
SfaNI GCATC 3 cut(s) 574, 652, 785
SinI GGWCC 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 633
SsiI CCGC 2 cut(s) 114, 449
SspI AATATT 1 cut(s) 270
SspMI CTAG 3 cut(s) 129, 347, 606
StyD4I CCNGG 2 cut(s) 132, 590
TaaI ACNGT 1 cut(s) 687
TaqI TCGA 2 cut(s) 458, 689
TauI GCSGC 1 cut(s) 451
Tru1I TTAA 8 cut(s) 6, 18, 47, 92, 120, 141, 165, 500
Tru9I TTAA 8 cut(s) 6, 18, 47, 92, 120, 141, 165, 500
TseFI GTSAC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 3 cut(s) 51, 290, 693
VpaK11BI GGWCC 1 cut(s) 291
VspI ATTAAT 1 cut(s) 141
XapI RAATTY 3 cut(s) 42, 195, 212
XspI CTAG 3 cut(s) 129, 347, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.