pycom03g07820

Belongs to the actin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
6191024 .. 6191809
786 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g07820.3

Sequence Viewer

Length: 387 bp
ATGGCCGACGCTGAGGATATTCAACCACTCGTCTGTGACAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTCTTTCCTAGCATTGTCGGTCGCCCACGTTACACTGGTGTGATGGTTGGAACGGGTCAAAAGGATGCATATGTTGGGGATGAGGCTCAGTCGAAGCGTGGTATCTTGACTCTGAAATACCCCATTGAGCATGGTATTGTGAGCAATTGGGATGATATGGAGAAGATTTGGCATCAACACTCCTGCTATGTATGTCGCCATCCAGGCTGTTCTTTCCCTCTACGCCAGTGGTCGTACAACTGGTATTGTTCTCGACTCTGGAGATGGTGTCAGTCACACTGTCCCCATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

129

Amino Acids

14.56

Weight (kDa)

6.98

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029185)

Species Orthologous Gene IDs
pyrus_communis pycom01g02630 pycom03g07820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 329
AgsI TTSAA 1 cut(s) 23
AjnI CCWGG 1 cut(s) 295
AleI CACNNNNGTG 1 cut(s) 131
AoxI GGCC 1 cut(s) 3
BbvCI CCTCAGC 1 cut(s) 12
BccI CCATC 3 cut(s) 130, 300, 351
BciT130I CCWGG 1 cut(s) 297
BfaI CTAG 1 cut(s) 102
BglI GCCNNNNNGGC 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 297
BmrFI CCNGG 1 cut(s) 297
BmsI GCATC 3 cut(s) 70, 148, 274
BpmI CTGGAG 2 cut(s) 93, 373
Bpu10I CCTNAGC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bse1I ACTGG 3 cut(s) 133, 319, 338
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 86
BseGI GGATG 4 cut(s) 163, 178, 250, 292
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 3 cut(s) 133, 319, 338
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 360
BsnI GGCC 1 cut(s) 5
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 4, 193
BsrI ACTGG 3 cut(s) 133, 319, 338
BssECI CCNNGG 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 374
BstDEI CTNAG 2 cut(s) 12, 180
BstF5I GGATG 4 cut(s) 163, 178, 250, 292
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 3 cut(s) 68, 89, 297
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 1 cut(s) 295
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 4 cut(s) 163, 178, 250, 292
BtsIMutI CAGTG 3 cut(s) 126, 326, 370
CseI GACGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 328
CviAII CATG 1 cut(s) 224
CviJI RGCY 5 cut(s) 5, 62, 92, 179, 300
CviKI_1 RGCY 5 cut(s) 5, 62, 92, 179, 300
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 2 cut(s) 12, 180
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 86
EcoT22I ATGCAT 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 86
FaeI CATG 1 cut(s) 227
FaiI YATR 7 cut(s) 163, 165, 225, 251, 282, 286, 385
FaqI GGGAC 1 cut(s) 360
FatI CATG 1 cut(s) 223
FauNDI CATATG 1 cut(s) 163
FokI GGATG 4 cut(s) 170, 185, 257, 279
FspBI CTAG 1 cut(s) 102
GsuI CTGGAG 2 cut(s) 93, 373
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 17
Hin1II CATG 1 cut(s) 227
HinfI GANTC 2 cut(s) 202, 348
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 3 cut(s) 199, 345, 352
Hpy99I CGWCG 1 cut(s) 11
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 89, 297
HpyF3I CTNAG 2 cut(s) 12, 180
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 1 cut(s) 227
LmnI GCTCC 1 cut(s) 88
LweI GCATC 3 cut(s) 70, 148, 274
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 3 cut(s) 35, 122, 366
MboII GAAGA 1 cut(s) 268
MfeI CAATTG 1 cut(s) 238
MluCI AATT 1 cut(s) 238
MlyI GAGTC 2 cut(s) 196, 342
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 3 cut(s) 7, 169, 321
Mph1103I ATGCAT 1 cut(s) 163
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 297
MunI CAATTG 1 cut(s) 238
MvaI CCWGG 1 cut(s) 297
MwoI GCNNNNNNNGC 3 cut(s) 68, 89, 297
NdeI CATATG 1 cut(s) 163
NlaIII CATG 1 cut(s) 227
NmuCI GTSAC 2 cut(s) 35, 366
NsiI ATGCAT 1 cut(s) 163
OliI CACNNNNGTG 1 cut(s) 131
PleI GAGTC 2 cut(s) 196, 342
PpsI GAGTC 2 cut(s) 196, 342
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 57
SchI GAGTC 2 cut(s) 196, 342
ScrFI CCNGG 1 cut(s) 297
SetI ASST 1 cut(s) 124
SfaNI GCATC 3 cut(s) 70, 148, 274
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 1 cut(s) 238
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 295
StyI CCWWGG 1 cut(s) 86
TaaI ACNGT 1 cut(s) 374
TaiI ACGT 1 cut(s) 124
TaqI TCGA 2 cut(s) 185, 346
TaqII GACCGA 1 cut(s) 101
TasI AATT 1 cut(s) 238
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 3 cut(s) 133, 326, 377
TseFI GTSAC 2 cut(s) 35, 366
Tsp45I GTSAC 2 cut(s) 35, 366
TspRI CASTG 3 cut(s) 133, 326, 377
XspI CTAG 1 cut(s) 102
Zsp2I ATGCAT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.