pycom01g02830

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0022519
Physical Location & Seq
Forward (+)
2309330 .. 2310778
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g02830.6

Sequence Viewer

Length: 1143 bp
ATGACACACTCCGCAAGGATTTGGTTGAGCATGTATGGCGCTGAGAAGGTGAACGTTGATGATGTTGGTGTATTAATGTGTTCTTGTGTTCTTGTGTTATGTAATAATTTTAAGTGTTCTTGTGCAAAATCATTGAAGACATCTGGAAGTGCAAAATTATTGAAGTGTCTTCTTGTGCAAAATTATTGGAGTGTCTTCTTGTGGAAAATTATTGAAGGCATATGGATGTGCAAAATTATTGAAGTGTCTTCTTGTGCAAAATTATTGAAGGCATCTGGATGTGCAAAATTATTAAAGTGGCTTCTTGTACAAAATAATAAGTACAATACCATAAATTTAATACACATGACAACTAATAAACACATAAACTTAATACAATCGATAATTCATAAACTACATAAACTTAATAATGATATCCACCATCTTCACTTGGCGGTGGACTTGGGATATAGGGTTGAGATGATTCATCATCTTGAAATATGCTCCTTGTGGCATGCTTTCGCAAAATTCCCTTTTACTTACCACCATGAAATTAATTTCGAACCTATCTTGCTCCCTATCCCCTTCTTCCTTCATTTGCAAACGCATTCGGGCTGCTTTTTCTTGGCGAGCGCTATGAGTTTTGCTCGATCTTGCAAATCCGGTAGCAATGTGTCCACTCCGGATCGGATCTTGGGACTTCCCTTTTCTCTTTGCTTCCTTTTACTTATCTCTTCCCGGAGGCCTTGCAAAAGAAGGAGTTGGGGTCATTTCATCGACACCTTCACCTTCATCTACACCTTCATCTTTGTGTTGGTCCGCATTGGTTCTCCACCTCGGACAATCCTTGAGGACGTCCCAAGCATGTTGCAACTTAAAAACTTAATTTTTTGGTGTTACTCTTGTCTTGTAAATTTCCATTGCTTTAATATTATTTACATGACAAATAAAATATCAACAAAAAAACTCACAATTTCTGCGGCGCTCCTTCCACTAGCCATGCCAACCACGGCTTTCTCCAAGCTTCCCTTCCATAAAGTCGTCCCTCCCGCCGCCGTTGCAGTTCTCATGAAACTTTTCAATGATTTTATCCCACTAAACCTTTTTATTTTGATTCATGCCAACTGCACCATCTTCACTCATAGAAACCCATGCCAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

381

Amino Acids

43.4

Weight (kDa)

9.38

Isoelectric Point (pI)

46.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022519)

Species Orthologous Gene IDs
pyrus_communis pycom01g02830 pycom04g02570 pycom12g10570 pycom13g23270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 837
AccIII TCCGGA 1 cut(s) 661
AciI CCGC 6 cut(s) 12, 434, 799, 959, 1029, 1032
AclI AACGTT 1 cut(s) 54
AclWI GGATC 2 cut(s) 672, 677
AcsI RAATTY 3 cut(s) 334, 506, 892
AcyI GRCGYC 1 cut(s) 834
AfaI GTAC 2 cut(s) 309, 323
AfeI AGCGCT 1 cut(s) 613
AgsI TTSAA 7 cut(s) 136, 163, 215, 242, 268, 476, 1060
AjuI GAANNNNNNNTTGG 2 cut(s) 992, 1024
AluBI AGCT 1 cut(s) 1003
AluI AGCT 1 cut(s) 1003
AlwI GGATC 2 cut(s) 672, 677
Aor13HI TCCGGA 1 cut(s) 661
Aor51HI AGCGCT 1 cut(s) 613
AoxI GGCC 1 cut(s) 722
ApeKI GCWGC 1 cut(s) 594
ApoI RAATTY 3 cut(s) 334, 506, 892
AseI ATTAAT 2 cut(s) 74, 534
Asp700I GAANNNNTTC 1 cut(s) 1055
AspLEI GCGC 3 cut(s) 41, 614, 964
AspS9I GGNCC 1 cut(s) 796
AsuC2I CCSGG 1 cut(s) 718
AsuHPI GGTGA 2 cut(s) 61, 757
AsuII TTCGAA 1 cut(s) 540
AvaII GGWCC 1 cut(s) 796
BbsI GAAGAC 4 cut(s) 143, 161, 187, 240
BbvI GCAGC 1 cut(s) 581
BccI CCATC 2 cut(s) 429, 1118
BceAI ACGGC 2 cut(s) 1005, 1019
BcnI CCSGG 1 cut(s) 718
BfaI CTAG 1 cut(s) 974
BfoI RGCGCY 3 cut(s) 42, 615, 965
BisI GCNGC 3 cut(s) 595, 960, 1032
BlsI GCNGC 3 cut(s) 596, 961, 1033
Bme1390I CCNGG 1 cut(s) 718
Bme18I GGWCC 1 cut(s) 796
BmgT120I GGNCC 1 cut(s) 796
BmrFI CCNGG 1 cut(s) 718
BmsI GCATC 1 cut(s) 281
BpiI GAAGAC 4 cut(s) 143, 161, 187, 240
BplI GAGNNNNNCTC 2 cut(s) 610, 642
Bpu14I TTCGAA 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 848
BpuMI CCSGG 1 cut(s) 718
Bsa29I ATCGAT 1 cut(s) 380
BsaHI GRCGYC 1 cut(s) 834
BsaJI CCNNGG 2 cut(s) 815, 987
BsaWI WCCGGW 2 cut(s) 641, 661
BsaXI ACNNNNNCTCC 2 cut(s) 730, 760
Bse3DI GCAATG 2 cut(s) 655, 898
BseAI TCCGGA 1 cut(s) 661
BseCI ATCGAT 1 cut(s) 380
BseDI CCNNGG 2 cut(s) 815, 987
BseGI GGATG 2 cut(s) 231, 284
BseMI GCAATG 2 cut(s) 655, 898
BseMII CTCAG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 581
BsgI GTGCAG 1 cut(s) 1090
BshFI GGCC 1 cut(s) 724
BshVI ATCGAT 1 cut(s) 380
BsiSI CCGG 3 cut(s) 642, 662, 718
BslFI GGGAC 3 cut(s) 690, 821, 1007
BsmFI GGGAC 3 cut(s) 690, 821, 1007
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 1 cut(s) 724
Bsp119I TTCGAA 1 cut(s) 540
Bsp13I TCCGGA 1 cut(s) 661
Bsp1407I TGTACA 1 cut(s) 307
Bsp143I GATC 3 cut(s) 629, 664, 669
BspACI CCGC 6 cut(s) 12, 434, 799, 959, 1029, 1032
BspANI GGCC 1 cut(s) 724
BspCNI CTCAG 1 cut(s) 34
BspDI ATCGAT 1 cut(s) 380
BspEI TCCGGA 1 cut(s) 661
BspHI TCATGA 1 cut(s) 1047
BspPI GGATC 2 cut(s) 672, 677
BspT104I TTCGAA 1 cut(s) 540
BsrDI GCAATG 2 cut(s) 655, 898
BsrGI TGTACA 1 cut(s) 307
BssECI CCNNGG 2 cut(s) 815, 987
BssMI GATC 3 cut(s) 629, 664, 669
BssNI GRCGYC 1 cut(s) 834
Bst6I CTCTTC 1 cut(s) 718
BstACI GRCGYC 1 cut(s) 834
BstAUI TGTACA 1 cut(s) 307
BstBI TTCGAA 1 cut(s) 540
BstC8I GCNNGC 2 cut(s) 495, 610
BstDEI CTNAG 1 cut(s) 42
BstDSI CCRYGG 1 cut(s) 987
BstF5I GGATG 2 cut(s) 231, 284
BstH2I RGCGCY 3 cut(s) 42, 615, 965
BstHHI GCGC 3 cut(s) 41, 614, 964
BstKTI GATC 3 cut(s) 632, 667, 672
BstMBI GATC 3 cut(s) 629, 664, 669
BstMWI GCNNNNNNNGC 2 cut(s) 36, 1037
BstNSI RCATGY 3 cut(s) 34, 497, 847
BstSCI CCNGG 1 cut(s) 716
BstV1I GCAGC 1 cut(s) 581
BstV2I GAAGAC 4 cut(s) 143, 161, 187, 240
BstX2I RGATCY 1 cut(s) 669
BstYI RGATCY 1 cut(s) 669
Bsu15I ATCGAT 1 cut(s) 380
BsuRI GGCC 1 cut(s) 724
BsuTUI ATCGAT 1 cut(s) 380
BtgI CCRYGG 1 cut(s) 987
BtsCI GGATG 2 cut(s) 231, 284
Cac8I GCNNGC 2 cut(s) 495, 610
CciI TCATGA 1 cut(s) 1047
CfoI GCGC 3 cut(s) 41, 614, 964
Cfr13I GGNCC 1 cut(s) 796
ClaI ATCGAT 1 cut(s) 380
Csp6I GTAC 2 cut(s) 308, 322
CviJI RGCY 6 cut(s) 301, 594, 724, 977, 992, 1003
CviKI_1 RGCY 6 cut(s) 301, 594, 724, 977, 992, 1003
CviQI GTAC 2 cut(s) 308, 322
DdeI CTNAG 1 cut(s) 42
DpnI GATC 3 cut(s) 631, 666, 671
DpnII GATC 3 cut(s) 629, 664, 669
Eam1104I CTCTTC 1 cut(s) 718
EarI CTCTTC 1 cut(s) 718
Eco147I AGGCCT 1 cut(s) 724
Eco32I GATATC 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 796
Eco47III AGCGCT 1 cut(s) 613
EcoRV GATATC 1 cut(s) 415
FalI AAGNNNNNCTT 2 cut(s) 992, 1024
FaqI GGGAC 3 cut(s) 690, 821, 1007
FauI CCCGC 1 cut(s) 1036
FauNDI CATATG 1 cut(s) 221
Fnu4HI GCNGC 3 cut(s) 595, 960, 1032
FokI GGATG 2 cut(s) 238, 291
Fsp4HI GCNGC 3 cut(s) 595, 960, 1032
FspBI CTAG 1 cut(s) 974
GlaI GCGC 3 cut(s) 40, 613, 963
GluI GCNGC 3 cut(s) 595, 960, 1032
HaeII RGCGCY 3 cut(s) 42, 615, 965
HaeIII GGCC 1 cut(s) 724
HapII CCGG 3 cut(s) 642, 662, 718
HhaI GCGC 3 cut(s) 41, 614, 964
Hin1I GRCGYC 1 cut(s) 834
Hin6I GCGC 3 cut(s) 39, 612, 962
HinP1I GCGC 3 cut(s) 39, 612, 962
HindIII AAGCTT 1 cut(s) 1001
HinfI GANTC 2 cut(s) 463, 1093
HpaII CCGG 3 cut(s) 642, 662, 718
HphI GGTGA 2 cut(s) 61, 757
Hpy166II GTNNAC 3 cut(s) 52, 439, 657
Hpy188I TCNGA 2 cut(s) 669, 819
Hpy188III TCNNGA 5 cut(s) 144, 276, 473, 662, 1048
Hpy8I GTNNAC 3 cut(s) 52, 439, 657
HpyCH4IV ACGT 2 cut(s) 54, 834
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 1037
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 2 cut(s) 54, 834
Hsp92I GRCGYC 1 cut(s) 834
HspAI GCGC 3 cut(s) 39, 612, 962
Kpn2I TCCGGA 1 cut(s) 661
Kzo9I GATC 3 cut(s) 629, 664, 669
LmnI GCTCC 3 cut(s) 488, 558, 969
LpnPI CCDG 5 cut(s) 129, 261, 655, 675, 731
Lsp1109I GCAGC 1 cut(s) 581
LweI GCATC 1 cut(s) 281
MaeI CTAG 1 cut(s) 974
MaeII ACGT 2 cut(s) 54, 834
MaeIII GTNAC 1 cut(s) 875
MalI GATC 3 cut(s) 631, 666, 671
MboI GATC 3 cut(s) 629, 664, 669
MboII GAAGA 8 cut(s) 148, 161, 187, 240, 416, 559, 705, 1105
MflI RGATCY 1 cut(s) 669
MnlI CCTC 4 cut(s) 714, 823, 825, 1035
MroI TCCGGA 1 cut(s) 661
MroXI GAANNNNTTC 1 cut(s) 1055
MslI CAYNNNNRTG 3 cut(s) 224, 277, 788
MspI CCGG 3 cut(s) 642, 662, 718
MspR9I CCNGG 1 cut(s) 718
Mva1269I GAATGC 1 cut(s) 586
MwoI GCNNNNNNNGC 2 cut(s) 36, 1037
NciI CCSGG 1 cut(s) 718
NdeI CATATG 1 cut(s) 221
NdeII GATC 3 cut(s) 629, 664, 669
NspI RCATGY 3 cut(s) 34, 497, 847
NspV TTCGAA 1 cut(s) 540
PaeI GCATGC 1 cut(s) 497
PagI TCATGA 1 cut(s) 1047
PceI AGGCCT 1 cut(s) 724
PctI GAATGC 1 cut(s) 586
PdmI GAANNNNTTC 1 cut(s) 1055
PfeI GAWTC 2 cut(s) 463, 1093
PfoI TCCNGGA 1 cut(s) 716
PkrI GCNGC 3 cut(s) 596, 961, 1033
PshBI ATTAAT 2 cut(s) 74, 534
Psp1406I AACGTT 1 cut(s) 54
PspPI GGNCC 1 cut(s) 796
PsuI RGATCY 1 cut(s) 669
RsaI GTAC 2 cut(s) 309, 323
RsaNI GTAC 2 cut(s) 308, 322
RseI CAYNNNNRTG 3 cut(s) 224, 277, 788
SatI GCNGC 3 cut(s) 595, 960, 1032
Sau3AI GATC 3 cut(s) 629, 664, 669
Sau96I GGNCC 1 cut(s) 796
ScrFI CCNGG 1 cut(s) 718
SfaNI GCATC 1 cut(s) 281
SfuI TTCGAA 1 cut(s) 540
SinI GGWCC 1 cut(s) 796
SmiMI CAYNNNNRTG 3 cut(s) 224, 277, 788
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
SphI GCATGC 1 cut(s) 497
SseBI AGGCCT 1 cut(s) 724
SsiI CCGC 6 cut(s) 12, 434, 799, 959, 1029, 1032
SspI AATATT 1 cut(s) 910
SspMI CTAG 1 cut(s) 974
StuI AGGCCT 1 cut(s) 724
StyD4I CCNGG 1 cut(s) 716
TaiI ACGT 2 cut(s) 57, 837
TaqI TCGA 4 cut(s) 380, 540, 628, 756
TatI WGTACW 2 cut(s) 307, 321
TauI GCSGC 2 cut(s) 962, 1034
TfiI GAWTC 2 cut(s) 463, 1093
TseI GCWGC 1 cut(s) 594
TspDTI ATGAA 9 cut(s) 377, 455, 543, 563, 742, 760, 772, 1064, 1085
VpaK11BI GGWCC 1 cut(s) 796
VspI ATTAAT 2 cut(s) 74, 534
XapI RAATTY 3 cut(s) 334, 506, 892
XceI RCATGY 3 cut(s) 34, 497, 847
XmnI GAANNNNTTC 1 cut(s) 1055
XspI CTAG 1 cut(s) 974
ZraI GACGTC 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.