Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0026660

Physical Location & Seq

Genomic Coordinates Reverse (-)

6341193 .. 6342928

Gene Structure 1736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGGAGTAGAAAACACACGGATACTGAATTGCATCCGTCCGATCCCCTGCCACTTCACAATCACACCCTATATATACGCCTTAACCTGTTGAACGTCCAAAACTTTTGTTCGTTCGAAGAAAGAGAAGACCGAGGCGAACGGAGCGCGAAGCAAGCAGAGATGGCCCGTACCAAGCAAACTGCTCGTAAGTCAACTGGAGGAAAGGCTCCCAGGAAGCAGCTCGCAACCAAGGCTGCCCGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCACAGATACCGCCCTGGTACCGTTGCTCTTCGTGAAATCCGTAAGTACCAGAAGAGTACTGAGCTGTTGATCAGGAAGCTGCCATTCCAGAGGCTTGTTCGTGAAATTGCCCAGGACTTCAAGACTGATCTGCGTTTCCAGAGCCACGCAGTGCTGGCACTGCAGGAGGCTGCTGAGGCTTACCTGGTGGGTCTGTTTGAGGACACCAACCTTTGCGCTATCCATGCCAAGCGGGTTACCATCATGCCGAAGGATATCCAGCTTGCCAGGAGGATCAGGGGTGAGCGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815 GO:0044877 GO:0051276 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

191

Amino Acids

21.72

Weight (kDa)

10.42

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	98 - 185	2.5e-38	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0026660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39151
pyrus_communis	pycom01g06240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	296
AccB7I	CCANNNNNTGG	1 cut(s)	260
AccII	CGCG	1 cut(s)	149
AciI	CCGC	2 cut(s)	289, 511
AclWI	GGATC	2 cut(s)	38, 560
AdeI	CACNNNGTG	1 cut(s)	430
AfaI	GTAC	4 cut(s)	172, 298, 326, 337
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	2 cut(s)	94, 400
AjnI	CCWGG	5 cut(s)	212, 292, 390, 462, 545
AluBI	AGCT	4 cut(s)	223, 343, 358, 541
AluI	AGCT	4 cut(s)	223, 343, 358, 541
AlwI	GGATC	2 cut(s)	38, 560
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	4 cut(s)	220, 236, 358, 449
Asp718I	GGTACC	1 cut(s)	296
AspLEI	GCGC	2 cut(s)	149, 497
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	572
AsuII	TTCGAA	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	135
BbvCI	CCTCAGC	1 cut(s)	453
BbvI	GCAGC	4 cut(s)	223, 232, 345, 436
BccI	CCATC	2 cut(s)	157, 527
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciT130I	CCWGG	5 cut(s)	214, 294, 392, 464, 547
BciVI	GTATCC	1 cut(s)	16
BclI	TGATCA	1 cut(s)	348
BfmI	CTRYAG	1 cut(s)	440
BfuI	GTATCC	1 cut(s)	16
BisI	GCNGC	4 cut(s)	221, 237, 359, 450
BlsI	GCNGC	4 cut(s)	222, 238, 360, 451
BmcAI	AGTACT	1 cut(s)	337
Bme1390I	CCNGG	5 cut(s)	214, 294, 392, 464, 547
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	2 cut(s)	210, 298
BmrFI	CCNGG	5 cut(s)	214, 294, 392, 464, 547
BmsI	GCATC	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	135
BpmI	CTGGAG	2 cut(s)	219, 282
Bpu10I	CCTNAGC	1 cut(s)	453
Bpu14I	TTCGAA	1 cut(s)	117
BsaJI	CCNNGG	5 cut(s)	133, 212, 231, 292, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse1I	ACTGG	2 cut(s)	202, 265
BseBI	CCWGG	5 cut(s)	214, 294, 392, 464, 547
BseDI	CCNNGG	5 cut(s)	133, 212, 231, 292, 390
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMII	CTCAG	2 cut(s)	330, 444
BseNI	ACTGG	2 cut(s)	202, 265
BseRI	GAGGAG	1 cut(s)	279
BseXI	GCAGC	4 cut(s)	223, 232, 345, 436
BsgI	GTGCAG	1 cut(s)	234
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	260
BsnI	GGCC	1 cut(s)	167
Bsp119I	TTCGAA	1 cut(s)	117
Bsp143I	GATC	4 cut(s)	43, 348, 406, 552
BspACI	CCGC	2 cut(s)	289, 511
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	2 cut(s)	331, 445
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	2 cut(s)	210, 298
BspMAI	CTGCAG	1 cut(s)	444
BspPI	GGATC	2 cut(s)	38, 560
BspQI	GCTCTTC	1 cut(s)	312
BspT104I	TTCGAA	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	296
BsrI	ACTGG	2 cut(s)	202, 265
BssECI	CCNNGG	5 cut(s)	133, 212, 231, 292, 390
BssMI	GATC	4 cut(s)	43, 348, 406, 552
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	5 cut(s)	214, 294, 392, 464, 547
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	2 cut(s)	312, 326
BstBI	TTCGAA	1 cut(s)	117
BstC8I	GCNNGC	5 cut(s)	156, 225, 435, 543, 567
BstDEI	CTNAG	2 cut(s)	339, 453
BstEII	GGTNACC	1 cut(s)	514
BstF5I	GGATG	1 cut(s)	34
BstFNI	CGCG	1 cut(s)	149
BstHHI	GCGC	2 cut(s)	149, 497
BstKTI	GATC	4 cut(s)	46, 351, 409, 555
BstMBI	GATC	4 cut(s)	43, 348, 406, 552
BstMWI	GCNNNNNNNGC	8 cut(s)	144, 155, 164, 233, 434, 439, 455, 503
BstNI	CCWGG	5 cut(s)	214, 294, 392, 464, 547
BstPI	GGTNACC	1 cut(s)	514
BstSCI	CCNGG	5 cut(s)	212, 292, 390, 462, 545
BstSFI	CTRYAG	1 cut(s)	440
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	4 cut(s)	223, 232, 345, 436
BstV2I	GAAGAC	1 cut(s)	135
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	34
BtsI	GCAGTG	2 cut(s)	435, 437
BtsIMutI	CAGTG	3 cut(s)	258, 435, 437
Cac8I	GCNNGC	5 cut(s)	156, 225, 435, 543, 567
CfoI	GCGC	2 cut(s)	149, 497
Cfr13I	GGNCC	1 cut(s)	166
CsiI	ACCWGGT	1 cut(s)	462
Csp6I	GTAC	4 cut(s)	171, 297, 325, 336
CviAII	CATG	2 cut(s)	503, 523
CviQI	GTAC	4 cut(s)	171, 297, 325, 336
DdeI	CTNAG	2 cut(s)	339, 453
DpnI	GATC	4 cut(s)	45, 350, 408, 554
DpnII	GATC	4 cut(s)	43, 348, 406, 552
DraIII	CACNNNGTG	1 cut(s)	430
Eam1104I	CTCTTC	2 cut(s)	312, 326
EarI	CTCTTC	2 cut(s)	312, 326
Eco130I	CCWWGG	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	535
Eco91I	GGTNACC	1 cut(s)	514
EcoO65I	GGTNACC	1 cut(s)	514
EcoRII	CCWGG	5 cut(s)	212, 292, 390, 462, 545
EcoRV	GATATC	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	2 cut(s)	506, 526
FaiI	YATR	5 cut(s)	73, 75, 77, 504, 524
FatI	CATG	2 cut(s)	502, 522
FauI	CCCGC	1 cut(s)	504
FbaI	TGATCA	1 cut(s)	348
Fnu4HI	GCNGC	4 cut(s)	221, 237, 359, 450
FokI	GGATG	1 cut(s)	21
Fsp4HI	GCNGC	4 cut(s)	221, 237, 359, 450
GlaI	GCGC	2 cut(s)	148, 496
GluI	GCNGC	4 cut(s)	221, 237, 359, 450
GsuI	CTGGAG	2 cut(s)	219, 282
HaeIII	GGCC	1 cut(s)	167
HhaI	GCGC	2 cut(s)	149, 497
Hin1II	CATG	2 cut(s)	506, 526
Hin6I	GCGC	2 cut(s)	147, 495
HinP1I	GCGC	2 cut(s)	147, 495
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	1 cut(s)	267
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	7 cut(s)	271, 311, 352, 367, 380, 400, 418
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	1 cut(s)	523
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	3 cut(s)	34, 251, 442
HpyF10VI	GCNNNNNNNGC	8 cut(s)	144, 155, 164, 233, 434, 439, 455, 503
HpyF3I	CTNAG	2 cut(s)	339, 453
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	506, 526
HspAI	GCGC	2 cut(s)	147, 495
KpnI	GGTACC	1 cut(s)	300
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	4 cut(s)	43, 348, 406, 552
LguI	GCTCTTC	1 cut(s)	312
LmnI	GCTCC	2 cut(s)	144, 214
Lsp1109I	GCAGC	4 cut(s)	223, 232, 345, 436
LweI	GCATC	1 cut(s)	43
MabI	ACCWGGT	1 cut(s)	462
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	4 cut(s)	45, 350, 408, 554
MboI	GATC	4 cut(s)	43, 348, 406, 552
MboII	GAAGA	4 cut(s)	131, 140, 299, 343
MluCI	AATT	2 cut(s)	29, 384
MlyI	GAGTC	1 cut(s)	276
MnlI	CCTC	8 cut(s)	128, 194, 257, 363, 439, 448, 472, 543
MseI	TTAA	2 cut(s)	84, 571
MspR9I	CCNGG	5 cut(s)	214, 294, 392, 464, 547
MvaI	CCWGG	5 cut(s)	214, 294, 392, 464, 547
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	8 cut(s)	144, 155, 164, 233, 434, 439, 455, 503
NdeII	GATC	4 cut(s)	43, 348, 406, 552
NlaIII	CATG	2 cut(s)	506, 526
NlaIV	GGNNCC	2 cut(s)	210, 298
NspV	TTCGAA	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	1 cut(s)	316
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	4 cut(s)	222, 238, 360, 451
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
Psp6I	CCWGG	5 cut(s)	212, 292, 390, 462, 545
PspEI	GGTNACC	1 cut(s)	514
PspGI	CCWGG	5 cut(s)	212, 292, 390, 462, 545
PspN4I	GGNNCC	2 cut(s)	210, 298
PspPI	GGNCC	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	444
RsaI	GTAC	4 cut(s)	172, 298, 326, 337
RsaNI	GTAC	4 cut(s)	171, 297, 325, 336
SapI	GCTCTTC	1 cut(s)	312
SaqAI	TTAA	2 cut(s)	84, 571
SatI	GCNGC	4 cut(s)	221, 237, 359, 450
Sau3AI	GATC	4 cut(s)	43, 348, 406, 552
Sau96I	GGNCC	1 cut(s)	166
ScaI	AGTACT	1 cut(s)	337
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	5 cut(s)	214, 294, 392, 464, 547
SetI	ASST	8 cut(s)	90, 99, 225, 345, 360, 465, 492, 543
SexAI	ACCWGGT	1 cut(s)	462
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	440
SfuI	TTCGAA	1 cut(s)	117
Sse9I	AATT	2 cut(s)	29, 384
SsiI	CCGC	2 cut(s)	289, 511
StyD4I	CCNGG	5 cut(s)	212, 292, 390, 462, 545
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	117
TaqII	GACCGA	1 cut(s)	147
TasI	AATT	2 cut(s)	29, 384
TatI	WGTACW	1 cut(s)	335
Tru1I	TTAA	2 cut(s)	84, 571
Tru9I	TTAA	2 cut(s)	84, 571
TscAI	CASTG	3 cut(s)	265, 435, 444
TseI	GCWGC	4 cut(s)	220, 236, 358, 449
TspGWI	ACGGA	4 cut(s)	27, 35, 157, 308
TspRI	CASTG	3 cut(s)	265, 435, 444
Van91I	CCANNNNNTGG	1 cut(s)	260
ZrmI	AGTACT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.