Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0029194

Physical Location & Seq

Genomic Coordinates Forward (+)

11152989 .. 11153336

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAAGGAATTGAATACGGATCTATTCGACCCGAGAACTACGCTGATGGAACCCGACTTCTCGCGGGCCGTGACGCCGTCGGCCGACGCTGACGGCGACGATTTCGGCTTCGCCTTTAACGATAGTAACTTCTCCGACCGTCTGCTTCGGATCGAGATCATGGGTGACACACCCGAGTCCAGACCCGATTCCGAGGCCTGCACCAGTATTGCTGATTGGGCCCGTCACCGGAAGCGGAGGAGAGAAGACATCAAGAAGGAAAACAGTATGTTCTCTTTGGATTTTTCAATTCGATTTTTGAATTTTGATGGGTTTTGTTTGGTTTCCGAGAAATTAGGGAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0031461 GO:0031463 GO:0032991 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0050896 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

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Protein Analysis

116

Amino Acids

13.22

Weight (kDa)

4.77

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0029194)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g10340 pycom07g14180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	64
AciI	CCGC	2 cut(s)	64, 235
AclWI	GGATC	2 cut(s)	27, 158
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	301
AcyI	GRCGYC	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	3 cut(s)	13, 288, 301
AlwI	GGATC	2 cut(s)	27, 158
Ama87I	CYCGRG	2 cut(s)	31, 173
AoxI	GGCC	4 cut(s)	66, 81, 195, 219
ApaI	GGGCCC	1 cut(s)	223
ApoI	RAATTY	1 cut(s)	301
AspS9I	GGNCC	3 cut(s)	66, 219, 220
AsuHPI	GGTGA	2 cut(s)	176, 218
AvaI	CYCGRG	2 cut(s)	31, 173
BaeGI	GKGCMC	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	223
BbsI	GAAGAC	1 cut(s)	252
BccI	CCATC	2 cut(s)	40, 302
BceAI	ACGGC	3 cut(s)	53, 61, 109
BmeT110I	CYCGRG	2 cut(s)	31, 173
BmgT120I	GGNCC	3 cut(s)	66, 219, 220
BmiI	GGNNCC	2 cut(s)	51, 221
BpiI	GAAGAC	1 cut(s)	252
BsaBI	GATNNNNATC	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	192
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	253
BseSI	GKGCMC	1 cut(s)	223
BseX3I	CGGCCG	1 cut(s)	81
BsgI	GTGCAG	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	64
Bsh1285I	CGRYCG	2 cut(s)	84, 139
BshFI	GGCC	4 cut(s)	68, 83, 197, 221
BsiEI	CGRYCG	2 cut(s)	84, 139
BsiHKCI	CYCGRG	2 cut(s)	31, 173
BsiSI	CCGG	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	228
BsnI	GGCC	4 cut(s)	68, 83, 197, 221
BsoBI	CYCGRG	2 cut(s)	31, 173
Bsp120I	GGGCCC	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	3 cut(s)	19, 150, 156
BspACI	CCGC	2 cut(s)	64, 235
BspANI	GGCC	4 cut(s)	68, 83, 197, 221
BspFNI	CGCG	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	51, 221
BspPI	GGATC	2 cut(s)	27, 158
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	3 cut(s)	19, 150, 156
BssNI	GRCGYC	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	140, 266
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	66, 199
BstFNI	CGCG	1 cut(s)	64
BstKTI	GATC	3 cut(s)	22, 153, 159
BstMBI	GATC	3 cut(s)	19, 150, 156
BstMCI	CGRYCG	2 cut(s)	84, 139
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstSLI	GKGCMC	1 cut(s)	223
BstUI	CGCG	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BstZI	CGGCCG	1 cut(s)	81
BsuRI	GGCC	4 cut(s)	68, 83, 197, 221
Cac8I	GCNNGC	2 cut(s)	66, 199
Cfr13I	GGNCC	3 cut(s)	66, 219, 220
CseI	GACGC	2 cut(s)	82, 95
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	5 cut(s)	68, 83, 108, 197, 221
CviKI_1	RGCY	5 cut(s)	68, 83, 108, 197, 221
DpnI	GATC	3 cut(s)	21, 152, 158
DpnII	GATC	3 cut(s)	19, 150, 156
EaeI	YGGCCR	1 cut(s)	81
EagI	CGGCCG	1 cut(s)	81
EclXI	CGGCCG	1 cut(s)	81
Eco147I	AGGCCT	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	223
Eco52I	CGGCCG	1 cut(s)	81
Eco88I	CYCGRG	2 cut(s)	31, 173
EcoT38I	GRGCYC	1 cut(s)	223
FaeI	CATG	1 cut(s)	163
FaiI	YATR	2 cut(s)	161, 269
FatI	CATG	1 cut(s)	159
FauI	CCCGC	1 cut(s)	57
FriOI	GRGCYC	1 cut(s)	223
HaeIII	GGCC	4 cut(s)	68, 83, 197, 221
HapII	CCGG	1 cut(s)	229
HgaI	GACGC	2 cut(s)	82, 95
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	163
HinfI	GANTC	2 cut(s)	176, 188
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	2 cut(s)	176, 218
Hpy188I	TCNGA	4 cut(s)	136, 150, 193, 328
Hpy188III	TCNNGA	3 cut(s)	154, 180, 253
Hpy99I	CGWCG	3 cut(s)	82, 89, 101
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	2 cut(s)	140, 266
HpyCH4V	TGCA	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	19, 150, 156
LpnPI	CCDG	4 cut(s)	193, 211, 217, 242
MaeIII	GTNAC	4 cut(s)	70, 125, 164, 224
MalI	GATC	3 cut(s)	21, 152, 158
MboI	GATC	3 cut(s)	19, 150, 156
MboII	GAAGA	1 cut(s)	257
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	4 cut(s)	8, 288, 301, 332
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	2 cut(s)	187, 231
MseI	TTAA	1 cut(s)	117
MspI	CCGG	1 cut(s)	229
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	218
NdeII	GATC	3 cut(s)	19, 150, 156
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	2 cut(s)	51, 221
NmuCI	GTSAC	3 cut(s)	70, 164, 224
PceI	AGGCCT	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 117
PfeI	GAWTC	1 cut(s)	188
PflFI	GACNNNGTC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	51, 221
PspOMI	GGGCCC	1 cut(s)	219
PspPI	GGNCC	3 cut(s)	66, 219, 220
PsuI	RGATCY	1 cut(s)	19
PsyI	GACNNNGTC	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	117
Sau3AI	GATC	3 cut(s)	19, 150, 156
Sau96I	GGNCC	3 cut(s)	66, 219, 220
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	223
Sse9I	AATT	4 cut(s)	8, 288, 301, 332
SseBI	AGGCCT	1 cut(s)	197
SsiI	CCGC	2 cut(s)	64, 235
StuI	AGGCCT	1 cut(s)	197
TaaI	ACNGT	2 cut(s)	140, 266
TaqI	TCGA	3 cut(s)	27, 153, 292
TasI	AATT	4 cut(s)	8, 288, 301, 332
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseFI	GTSAC	3 cut(s)	70, 164, 224
Tsp45I	GTSAC	3 cut(s)	70, 164, 224
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	32
Tth111I	GACNNNGTC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.