Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0028625

Physical Location & Seq

Genomic Coordinates Forward (+)

12267638 .. 12268513

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g11330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCACCGCAAAATACTCAACGTGCTCAGATCGCTAGCAATTCTGACGATGTTCCTCCTGACGAACATGCCACGTTTCGCTCCATAGAACTAAAATTTTCCGGGACTTTACTGTTACTGGCAGCGGTATTTGGTGTTGTCATAATATTTATGGACGTATCCCTCGGCATTTTTGCCAAAAGTTTAACAATACTAACTGTTGCAGCACATTTGTATGCTGATGTTGCCACATTGGCCATCTCGGTGTGGGCAGTTTCTAGCTGGGAAGCCCCACCCAGTGAATCGCCTTATCACCGGCGGTTTTTAAGGATTGAAATTCTCGGAGCCCTACTTTCCATCCAACTCATATGGCTGTTCTCTGGGATATTGGTGTATGAAAGCATAGTGAAAACCATCGATGACACAGCTGAGGTGAATGCCGTCATAATGTTTCCTGGTGGCCTAGTTTGTCTTGGGGGGAGTGTGATCATGGCCTTACTTCTGGACCACATAACTGTTGAAGGACAAGATGGTGATTTTCGTCACAGCGACGAAATGACAATTTCTAGTACTCGTAATGATCGTAAACGATCACATGATCATGATGATGCTGATCAGAGTCGACCACTGTTGGATAAGCTTGCAAAAGACAGATATGAAAAGATAAGGCAGAGGTGCATAAAAGTACTCCGTGCACTTAAGGACTCCGTTCATGCTATTGCAGTACTGATTTGCGCGGCGTTCATTTTGTACGAGCCTGAATGGAAGGTTTTTGATTTGATTTGCACCCTAATTTTTTCTGTGACTCTTCTGTGGAAGACTGTCAAGATGCTGCGTAATGTACTTGATGTCGTGATGGGAAGGACGCCTAGAGCGATTCATGTGAAGAGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

292

Amino Acids

32.52

Weight (kDa)

6.5

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	38 - 276	7.1e-17	Cation efflux transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028625)

Species	Orthologous Gene IDs
malus_domestica	MD01G1089000.v1.1
pyrus_communis	pycom01g11330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	601
AccII	CGCG	1 cut(s)	716
AciI	CCGC	4 cut(s)	8, 125, 298, 716
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	2 cut(s)	95, 315
AcyI	GRCGYC	1 cut(s)	845
AdeI	CACNNNGTG	1 cut(s)	278
AfaI	GTAC	5 cut(s)	550, 666, 705, 731, 822
AflII	CTTAAG	1 cut(s)	677
AgsI	TTSAA	2 cut(s)	314, 500
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	3 cut(s)	261, 407, 619
AluI	AGCT	3 cut(s)	261, 407, 619
Alw21I	GWGCWC	2 cut(s)	28, 676
Alw44I	GTGCAC	1 cut(s)	672
AoxI	GGCC	3 cut(s)	234, 439, 471
ApaLI	GTGCAC	1 cut(s)	672
ApeKI	GCWGC	3 cut(s)	122, 203, 811
ApoI	RAATTY	2 cut(s)	95, 315
AspLEI	GCGC	1 cut(s)	716
AspS9I	GGNCC	1 cut(s)	484
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	3 cut(s)	284, 424, 524
AsuNHI	GCTAGC	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	484
BaeGI	GKGCMC	1 cut(s)	676
BalI	TGGCCA	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	803
Bbv12I	GWGCWC	2 cut(s)	28, 676
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	3 cut(s)	134, 215, 798
BccI	CCATC	5 cut(s)	245, 344, 401, 503, 829
BceAI	ACGGC	1 cut(s)	404
BciT130I	CCWGG	1 cut(s)	435
BciVI	GTATCC	1 cut(s)	169
BclI	TGATCA	3 cut(s)	465, 577, 592
BcnI	CCSGG	1 cut(s)	103
BfaI	CTAG	5 cut(s)	36, 258, 443, 546, 849
BfrI	CTTAAG	1 cut(s)	677
BfuI	GTATCC	1 cut(s)	169
BglI	GCCNNNNNGGC	1 cut(s)	233
BisI	GCNGC	4 cut(s)	123, 204, 717, 812
BlsI	GCNGC	4 cut(s)	124, 205, 718, 813
BmcAI	AGTACT	3 cut(s)	550, 666, 705
Bme1390I	CCNGG	2 cut(s)	103, 435
Bme18I	GGWCC	1 cut(s)	484
BmgT120I	GGNCC	1 cut(s)	484
BmiI	GGNNCC	2 cut(s)	6, 325
BmrFI	CCNGG	2 cut(s)	103, 435
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	577, 798
BmtI	GCTAGC	1 cut(s)	39
BmuI	ACTGGG	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	803
Bpu10I	CCTNAGC	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	103
Bsa29I	ATCGAT	1 cut(s)	396
BsaBI	GATNNNNATC	1 cut(s)	591
BsaHI	GRCGYC	1 cut(s)	845
BsaJI	CCNNGG	1 cut(s)	163
Bse118I	RCCGGY	1 cut(s)	294
Bse1I	ACTGG	2 cut(s)	123, 276
Bse8I	GATNNNNATC	1 cut(s)	591
BseBI	CCWGG	1 cut(s)	435
BseCI	ATCGAT	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	336
BseJI	GATNNNNATC	1 cut(s)	591
BseMII	CTCAG	2 cut(s)	41, 399
BseNI	ACTGG	2 cut(s)	123, 276
BseSI	GKGCMC	1 cut(s)	676
BseXI	GCAGC	3 cut(s)	134, 215, 798
BseYI	CCCAGC	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	716
BshFI	GGCC	3 cut(s)	236, 441, 473
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	396
BsiHKAI	GWGCWC	2 cut(s)	28, 676
BsiSI	CCGG	2 cut(s)	102, 295
BslFI	GGGAC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	3 cut(s)	236, 441, 473
Bsp1286I	GDGCHC	3 cut(s)	28, 328, 676
Bsp143I	GATC	6 cut(s)	30, 465, 559, 569, 577, 592
BspACI	CCGC	4 cut(s)	8, 125, 298, 716
BspANI	GGCC	3 cut(s)	236, 441, 473
BspCNI	CTCAG	2 cut(s)	40, 400
BspDI	ATCGAT	1 cut(s)	396
BspFNI	CGCG	1 cut(s)	716
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	2 cut(s)	6, 325
BspOI	GCTAGC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	677
BsrFI	RCCGGY	1 cut(s)	294
BsrI	ACTGG	2 cut(s)	123, 276
BssAI	RCCGGY	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	6 cut(s)	30, 465, 559, 569, 577, 592
BssNI	GRCGYC	1 cut(s)	845
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	5 cut(s)	114, 199, 496, 609, 802
Bst6I	CTCTTC	2 cut(s)	792, 860
BstACI	GRCGYC	1 cut(s)	845
BstAFI	CTTAAG	1 cut(s)	677
BstC8I	GCNNGC	2 cut(s)	37, 621
BstDEI	CTNAG	2 cut(s)	27, 408
BstF5I	GGATG	1 cut(s)	336
BstFNI	CGCG	1 cut(s)	716
BstHHI	GCGC	1 cut(s)	716
BstKTI	GATC	6 cut(s)	33, 468, 562, 572, 580, 595
BstMBI	GATC	6 cut(s)	30, 465, 559, 569, 577, 592
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 224, 233
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	2 cut(s)	101, 433
BstSLI	GKGCMC	1 cut(s)	676
BstUI	CGCG	1 cut(s)	716
BstV1I	GCAGC	3 cut(s)	134, 215, 798
BstV2I	GAAGAC	1 cut(s)	803
Bsu15I	ATCGAT	1 cut(s)	396
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	3 cut(s)	236, 441, 473
BsuTUI	ATCGAT	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	336
BtsIMutI	CAGTG	2 cut(s)	283, 605
Cac8I	GCNNGC	2 cut(s)	37, 621
CciI	TCATGA	1 cut(s)	580
CfoI	GCGC	1 cut(s)	716
Cfr10I	RCCGGY	1 cut(s)	294
Cfr13I	GGNCC	1 cut(s)	484
ClaI	ATCGAT	1 cut(s)	396
CseI	GACGC	1 cut(s)	853
Csp6I	GTAC	5 cut(s)	549, 665, 704, 730, 821
CviAII	CATG	6 cut(s)	68, 469, 575, 581, 692, 860
CviQI	GTAC	5 cut(s)	549, 665, 704, 730, 821
DdeI	CTNAG	2 cut(s)	27, 408
DpnI	GATC	6 cut(s)	32, 467, 561, 571, 579, 594
DpnII	GATC	6 cut(s)	30, 465, 559, 569, 577, 592
DraIII	CACNNNGTG	1 cut(s)	278
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	2 cut(s)	792, 860
EarI	CTCTTC	2 cut(s)	792, 860
Eco24I	GRGCYC	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	328
FaeI	CATG	6 cut(s)	71, 472, 578, 584, 695, 863
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	6 cut(s)	67, 468, 574, 580, 691, 859
FauNDI	CATATG	1 cut(s)	347
FbaI	TGATCA	3 cut(s)	465, 577, 592
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	4 cut(s)	123, 204, 717, 812
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	4 cut(s)	123, 204, 717, 812
FspBI	CTAG	5 cut(s)	36, 258, 443, 546, 849
GlaI	GCGC	1 cut(s)	715
GluI	GCNGC	4 cut(s)	123, 204, 717, 812
GsaI	CCCAGC	1 cut(s)	265
HaeIII	GGCC	3 cut(s)	236, 441, 473
HapII	CCGG	2 cut(s)	102, 295
HgaI	GACGC	1 cut(s)	853
HhaI	GCGC	1 cut(s)	716
Hin1I	GRCGYC	1 cut(s)	845
Hin1II	CATG	6 cut(s)	71, 472, 578, 584, 695, 863
Hin6I	GCGC	1 cut(s)	714
HinP1I	GCGC	1 cut(s)	714
HincII	GTYRAC	1 cut(s)	602
HindII	GTYRAC	1 cut(s)	602
HindIII	AAGCTT	1 cut(s)	617
HinfI	GANTC	5 cut(s)	281, 598, 683, 784, 856
HpaII	CCGG	2 cut(s)	102, 295
HphI	GGTGA	3 cut(s)	284, 424, 524
Hpy166II	GTNNAC	3 cut(s)	566, 602, 674
Hpy188I	TCNGA	4 cut(s)	30, 46, 323, 597
Hpy188III	TCNNGA	5 cut(s)	59, 482, 581, 805, 832
Hpy8I	GTNNAC	3 cut(s)	566, 602, 674
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	3 cut(s)	494, 739, 834
HpyCH4III	ACNGT	5 cut(s)	114, 199, 496, 609, 802
HpyCH4IV	ACGT	3 cut(s)	22, 74, 156
HpyCH4V	TGCA	6 cut(s)	203, 623, 657, 674, 701, 765
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 224, 233
HpyF3I	CTNAG	2 cut(s)	27, 408
HpySE526I	ACGT	3 cut(s)	22, 74, 156
Hsp92I	GRCGYC	1 cut(s)	845
Hsp92II	CATG	6 cut(s)	71, 472, 578, 584, 695, 863
HspAI	GCGC	1 cut(s)	714
Ksp22I	TGATCA	3 cut(s)	465, 577, 592
Kzo9I	GATC	6 cut(s)	30, 465, 559, 569, 577, 592
LmnI	GCTCC	2 cut(s)	86, 323
Lsp1109I	GCAGC	3 cut(s)	134, 215, 798
LweI	GCATC	2 cut(s)	577, 798
MaeI	CTAG	5 cut(s)	36, 258, 443, 546, 849
MaeII	ACGT	3 cut(s)	22, 74, 156
MaeIII	GTNAC	3 cut(s)	114, 521, 781
MalI	GATC	6 cut(s)	32, 467, 561, 571, 579, 594
MboI	GATC	6 cut(s)	30, 465, 559, 569, 577, 592
MboII	GAAGA	2 cut(s)	779, 808
MhlI	GDGCHC	3 cut(s)	28, 328, 676
MlsI	TGGCCA	1 cut(s)	236
MluCI	AATT	5 cut(s)	40, 95, 315, 540, 771
MluNI	TGGCCA	1 cut(s)	236
MlyI	GAGTC	3 cut(s)	607, 677, 778
MmeI	TCCRAC	2 cut(s)	364, 591
MnlI	CCTC	5 cut(s)	66, 173, 403, 645, 861
Mox20I	TGGCCA	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	3 cut(s)	185, 305, 678
MslI	CAYNNNNRTG	4 cut(s)	213, 242, 579, 585
Msp20I	TGGCCA	1 cut(s)	236
MspA1I	CMGCKG	2 cut(s)	125, 407
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	2 cut(s)	102, 295
MspR9I	CCNGG	2 cut(s)	103, 435
Mva1269I	GAATGC	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	435
MvnI	CGCG	1 cut(s)	716
MwoI	GCNNNNNNNGC	3 cut(s)	32, 224, 233
NciI	CCSGG	1 cut(s)	103
NdeI	CATATG	1 cut(s)	347
NdeII	GATC	6 cut(s)	30, 465, 559, 569, 577, 592
NheI	GCTAGC	1 cut(s)	35
NlaIII	CATG	6 cut(s)	71, 472, 578, 584, 695, 863
NlaIV	GGNNCC	2 cut(s)	6, 325
NmeAIII	GCCGAG	1 cut(s)	144
NmuCI	GTSAC	2 cut(s)	521, 781
NspI	RCATGY	1 cut(s)	71
PagI	TCATGA	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	2 cut(s)	559, 851
PctI	GAATGC	1 cut(s)	421
PfeI	GAWTC	2 cut(s)	281, 856
PfoI	TCCNGGA	1 cut(s)	101
PkrI	GCNGC	4 cut(s)	124, 205, 718, 813
PleI	GAGTC	3 cut(s)	606, 677, 778
PpsI	GAGTC	3 cut(s)	606, 677, 778
Psp6I	CCWGG	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	2 cut(s)	6, 325
PspPI	GGNCC	1 cut(s)	484
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	5 cut(s)	550, 666, 705, 731, 822
RsaNI	GTAC	5 cut(s)	549, 665, 704, 730, 821
RseI	CAYNNNNRTG	4 cut(s)	213, 242, 579, 585
SalI	GTCGAC	1 cut(s)	600
SaqAI	TTAA	3 cut(s)	185, 305, 678
SatI	GCNGC	4 cut(s)	123, 204, 717, 812
Sau3AI	GATC	6 cut(s)	30, 465, 559, 569, 577, 592
Sau96I	GGNCC	1 cut(s)	484
ScaI	AGTACT	3 cut(s)	550, 666, 705
SchI	GAGTC	3 cut(s)	607, 677, 778
ScrFI	CCNGG	2 cut(s)	103, 435
SduI	GDGCHC	3 cut(s)	28, 328, 676
SetI	ASST	9 cut(s)	25, 77, 159, 263, 409, 414, 621, 656, 750
SfaNI	GCATC	2 cut(s)	577, 798
SgrAI	CRCCGGYG	1 cut(s)	294
SinI	GGWCC	1 cut(s)	484
SmiMI	CAYNNNNRTG	4 cut(s)	213, 242, 579, 585
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	5 cut(s)	40, 95, 315, 540, 771
SsiI	CCGC	4 cut(s)	8, 125, 298, 716
SspI	AATATT	1 cut(s)	147
SspMI	CTAG	5 cut(s)	36, 258, 443, 546, 849
StyD4I	CCNGG	2 cut(s)	101, 433
TaaI	ACNGT	5 cut(s)	114, 199, 496, 609, 802
TaiI	ACGT	3 cut(s)	25, 77, 159
TaqI	TCGA	2 cut(s)	396, 601
TasI	AATT	5 cut(s)	40, 95, 315, 540, 771
TatI	WGTACW	4 cut(s)	548, 664, 703, 820
TauI	GCSGC	1 cut(s)	719
TfiI	GAWTC	2 cut(s)	281, 856
Tru1I	TTAA	3 cut(s)	185, 305, 678
Tru9I	TTAA	3 cut(s)	185, 305, 678
TscAI	CASTG	2 cut(s)	283, 612
TseFI	GTSAC	2 cut(s)	521, 781
TseI	GCWGC	3 cut(s)	122, 203, 811
Tsp45I	GTSAC	2 cut(s)	521, 781
TspDTI	ATGAA	5 cut(s)	390, 651, 680, 712, 848
TspGWI	ACGGA	2 cut(s)	659, 676
TspRI	CASTG	2 cut(s)	283, 612
Vha464I	CTTAAG	1 cut(s)	677
VneI	GTGCAC	1 cut(s)	672
VpaK11BI	GGWCC	1 cut(s)	484
XapI	RAATTY	2 cut(s)	95, 315
XceI	RCATGY	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	601
XspI	CTAG	5 cut(s)	36, 258, 443, 546, 849
ZrmI	AGTACT	3 cut(s)	550, 666, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.