pycom01g11690

Protein of unknown function (DUF819)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0029195
Physical Location & Seq
Forward (+)
12739835 .. 12741383
1549 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 423 bp
ATGCAACAATTGGATTTGGAGTTTGATATAGGAGTTGAGGTATCAGTTTGTGAAACTGGGGTTACAGGGATTCGATTTCGGATTGTTTTTGCTCTTTTTGGTCTGTTCGCCACCGGTGCTTTTGGCCTCTGGTCCGAGAAGACGAAGATTGGTGGAATGGTGAGTGCTGCCCTTGTAAGCACTTTGGTTGGGCTTGCAGCAAGTAATTTTGGCATAATTCCTTTTGAAGCGCCTGCATATTCCATTGTCTTGGAGTTCCTTCTACCATTATCTATTCCATTGCTATTATATAGAGCTGACTTGTGCAGTGATGCGGTCCACGGGGACTTTGCTCTTAGCTTTCATGCTTGGATCAGTTGCGACTATGGTTGGAACTCTCGTGGCATTTCTAATGGTGCCCATGCGATCACTGGGTCCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF819

Protein Analysis

141

Amino Acids

14.98

Weight (kDa)

4.93

Isoelectric Point (pI)

13.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF819 PF05684 35 - 101 4.7e-17 Protein of unknown function (DUF819)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029195)

Species Orthologous Gene IDs
pyrus_communis pycom01g11690
rosa_roxburghii Rroxscaffold_4G00280670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 395
AciI CCGC 1 cut(s) 314
AclWI GGATC 1 cut(s) 359
AgeI ACCGGT 1 cut(s) 113
AgsI TTSAA 1 cut(s) 227
AluBI AGCT 2 cut(s) 296, 339
AluI AGCT 2 cut(s) 296, 339
AlwI GGATC 1 cut(s) 359
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 2 cut(s) 167, 197
AsiGI ACCGGT 1 cut(s) 113
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 3 cut(s) 132, 316, 414
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 3 cut(s) 132, 316, 414
BaeGI GKGCMC 1 cut(s) 400
BanI GGYRCC 1 cut(s) 395
BauI CACGAG 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 154, 209
BfoI RGCGCY 1 cut(s) 233
BisI GCNGC 2 cut(s) 168, 198
BlsI GCNGC 2 cut(s) 169, 199
Bme18I GGWCC 3 cut(s) 132, 316, 414
BmgT120I GGNCC 3 cut(s) 132, 316, 414
BmiI GGNNCC 2 cut(s) 397, 415
BmrI ACTGGG 2 cut(s) 66, 420
BmsI GCATC 1 cut(s) 301
BmuI ACTGGG 2 cut(s) 66, 420
BpiI GAAGAC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 319
BsaWI WCCGGW 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 2 cut(s) 61, 415
Bse3DI GCAATG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 319
BseMI GCAATG 1 cut(s) 278
BseNI ACTGG 2 cut(s) 61, 415
BseSI GKGCMC 1 cut(s) 400
BseXI GCAGC 2 cut(s) 154, 209
BsgI GTGCAG 1 cut(s) 325
BshFI GGCC 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 395
BshTI ACCGGT 1 cut(s) 113
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 338
BsnI GGCC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 2 cut(s) 351, 405
BspACI CCGC 1 cut(s) 314
BspANI GGCC 1 cut(s) 126
BspLI GGNNCC 2 cut(s) 397, 415
BspPI GGATC 1 cut(s) 359
BspT107I GGYRCC 1 cut(s) 395
BsrDI GCAATG 1 cut(s) 278
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 2 cut(s) 61, 415
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 2 cut(s) 351, 405
BssSI CACGAG 1 cut(s) 378
Bst2BI CACGAG 1 cut(s) 378
BstC8I GCNNGC 2 cut(s) 195, 234
BstDEI CTNAG 1 cut(s) 335
BstDSI CCRYGG 1 cut(s) 319
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 2 cut(s) 354, 408
BstMBI GATC 2 cut(s) 351, 405
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstSLI GKGCMC 1 cut(s) 400
BstV1I GCAGC 2 cut(s) 154, 209
BstV2I GAAGAC 1 cut(s) 146
BstXI CCANNNNNNTGG 1 cut(s) 250
BsuRI GGCC 1 cut(s) 126
BtgI CCRYGG 1 cut(s) 319
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 2 cut(s) 313, 408
Cac8I GCNNGC 2 cut(s) 195, 234
CfoI GCGC 1 cut(s) 232
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 3 cut(s) 132, 316, 414
CspAI ACCGGT 1 cut(s) 113
CviAII CATG 2 cut(s) 344, 401
CviJI RGCY 4 cut(s) 126, 193, 296, 339
CviKI_1 RGCY 4 cut(s) 126, 193, 296, 339
DdeI CTNAG 1 cut(s) 335
DpnI GATC 2 cut(s) 353, 407
DpnII GATC 2 cut(s) 351, 405
Eco47I GGWCC 3 cut(s) 132, 316, 414
FaeI CATG 2 cut(s) 347, 404
FaiI YATR 8 cut(s) 29, 215, 238, 289, 291, 345, 366, 402
FaqI GGGAC 1 cut(s) 338
FatI CATG 2 cut(s) 343, 400
Fnu4HI GCNGC 2 cut(s) 168, 198
Fsp4HI GCNGC 2 cut(s) 168, 198
GlaI GCGC 1 cut(s) 231
GluI GCNGC 2 cut(s) 168, 198
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 1 cut(s) 126
HapII CCGG 1 cut(s) 114
HhaI GCGC 1 cut(s) 232
Hin1II CATG 2 cut(s) 347, 404
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HinfI GANTC 1 cut(s) 70
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 2 cut(s) 81, 136
Hpy188III TCNNGA 1 cut(s) 417
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 1 cut(s) 269
HpyCH4V TGCA 4 cut(s) 4, 197, 236, 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 1 cut(s) 335
Hsp92II CATG 2 cut(s) 347, 404
HspAI GCGC 1 cut(s) 230
Kzo9I GATC 2 cut(s) 351, 405
LpnPI CCDG 6 cut(s) 42, 51, 115, 127, 246, 396
Lsp1109I GCAGC 2 cut(s) 154, 209
LweI GCATC 1 cut(s) 301
MaeIII GTNAC 1 cut(s) 61
MalI GATC 2 cut(s) 353, 407
MboI GATC 2 cut(s) 351, 405
MboII GAAGA 2 cut(s) 151, 157
MfeI CAATTG 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 3 cut(s) 8, 205, 216
MmeI TCCRAC 1 cut(s) 350
MnlI CCTC 2 cut(s) 31, 137
MspI CCGG 1 cut(s) 114
MunI CAATTG 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 2 cut(s) 351, 405
NlaIII CATG 2 cut(s) 347, 404
NlaIV GGNNCC 2 cut(s) 397, 415
PfeI GAWTC 1 cut(s) 70
PinAI ACCGGT 1 cut(s) 113
PkrI GCNGC 2 cut(s) 169, 199
PspN4I GGNNCC 2 cut(s) 397, 415
PspPI GGNCC 3 cut(s) 132, 316, 414
SatI GCNGC 2 cut(s) 168, 198
Sau3AI GATC 2 cut(s) 351, 405
Sau96I GGNCC 3 cut(s) 132, 316, 414
SduI GDGCHC 1 cut(s) 400
SetI ASST 3 cut(s) 42, 298, 341
SfaNI GCATC 1 cut(s) 301
SgrAI CRCCGGYG 1 cut(s) 113
SinI GGWCC 3 cut(s) 132, 316, 414
Sse9I AATT 3 cut(s) 8, 205, 216
SsiI CCGC 1 cut(s) 314
TaqI TCGA 1 cut(s) 73
TasI AATT 3 cut(s) 8, 205, 216
TfiI GAWTC 1 cut(s) 70
TscAI CASTG 2 cut(s) 313, 415
TseI GCWGC 2 cut(s) 167, 197
TspDTI ATGAA 1 cut(s) 332
TspRI CASTG 2 cut(s) 313, 415
VpaK11BI GGWCC 3 cut(s) 132, 316, 414
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.