Rroxscaffold_4G00280670

Protein of unknown function (DUF819)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0029195
Physical Location & Seq
Forward (+)
3149799 .. 3151140
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00280670.1

Sequence Viewer

Length: 201 bp
ATGTCACAGCTCCGGCACCCTATCATCTCTCCGGACGACCACTGGGACTTATGGACCACCCTCTTCGCCACCGGCGCTTTCGGCCTGTGGTCGGAGAAGACCGAGATTGGTGGGATGGTGAGTGCTGCTCTGGCAAGCACTTTAGTTGGGGTTGCAACTAGTAATGTTCATAAAAATTTAAGAAGTAATCGATTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF819

Protein Analysis

66

Amino Acids

7.24

Weight (kDa)

6.25

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029195)

Species Orthologous Gene IDs
pyrus_communis pycom01g11690
rosa_roxburghii Rroxscaffold_4G00280670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 15
AccIII TCCGGA 1 cut(s) 31
AcsI RAATTY 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 91
AhlI ACTAGT 1 cut(s) 158
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Aor13HI TCCGGA 1 cut(s) 31
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 175
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 54
BanI GGYRCC 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 109
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 78
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 17
BmrI ACTGGG 1 cut(s) 52
BmuI ACTGGG 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 104
BplI GAGNNNNNCTC 2 cut(s) 112, 144
Bsa29I ATCGAT 1 cut(s) 190
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 47
BseAI TCCGGA 1 cut(s) 31
BseCI ATCGAT 1 cut(s) 190
BseGI GGATG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 112
BshFI GGCC 1 cut(s) 84
BshNI GGYRCC 1 cut(s) 15
BshVI ATCGAT 1 cut(s) 190
BsiSI CCGG 3 cut(s) 13, 32, 72
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 1 cut(s) 84
Bsp13I TCCGGA 1 cut(s) 31
BspANI GGCC 1 cut(s) 84
BspDI ATCGAT 1 cut(s) 190
BspEI TCCGGA 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 17
BspT107I GGYRCC 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 71
Bst6I CTCTTC 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 136
BstF5I GGATG 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstMWI GCNNNNNNNGC 3 cut(s) 74, 81, 131
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 104
Bsu15I ATCGAT 1 cut(s) 190
BsuRI GGCC 1 cut(s) 84
BsuTUI ATCGAT 1 cut(s) 190
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 136
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 54
ClaI ATCGAT 1 cut(s) 190
CviJI RGCY 2 cut(s) 10, 84
CviKI_1 RGCY 2 cut(s) 10, 84
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 54
FaiI YATR 2 cut(s) 52, 171
FaqI GGGAC 1 cut(s) 59
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 127
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 1 cut(s) 159
GlaI GCGC 1 cut(s) 76
GluI GCNGC 1 cut(s) 126
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 1 cut(s) 84
HapII CCGG 3 cut(s) 13, 32, 72
HhaI GCGC 1 cut(s) 77
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HpaII CCGG 3 cut(s) 13, 32, 72
HphI GGTGA 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 81, 131
HspAI GCGC 1 cut(s) 75
Kpn2I TCCGGA 1 cut(s) 31
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 6 cut(s) 26, 28, 45, 85, 98, 116
Lsp1109I GCAGC 1 cut(s) 112
MaeI CTAG 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 3
MboII GAAGA 2 cut(s) 55, 109
MluCI AATT 1 cut(s) 175
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 1 cut(s) 71
MroI TCCGGA 1 cut(s) 31
MseI TTAA 1 cut(s) 179
MspI CCGG 3 cut(s) 13, 32, 72
MwoI GCNNNNNNNGC 3 cut(s) 74, 81, 131
NlaIV GGNNCC 1 cut(s) 17
NmuCI GTSAC 1 cut(s) 3
PkrI GCNGC 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 17
PspPI GGNCC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 54
SetI ASST 1 cut(s) 12
SgeI CNNG 9 cut(s) 25, 44, 55, 84, 97, 115, 143, 147, 171
SgrAI CRCCGGYG 1 cut(s) 71
SinI GGWCC 1 cut(s) 54
SpeI ACTAGT 1 cut(s) 158
Sse9I AATT 1 cut(s) 175
SspMI CTAG 1 cut(s) 159
TaqI TCGA 1 cut(s) 190
TaqII GACCGA 1 cut(s) 116
TasI AATT 1 cut(s) 175
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 158
TspRI CASTG 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 54
XapI RAATTY 1 cut(s) 175
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.