Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0029196

Physical Location & Seq

Genomic Coordinates Forward (+)

12971054 .. 12971284

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGAGATGGGTTTCACATTTCTTAGCCTTGCCACTGGATCCCAAATTTGATATTTCTTTAACGCATCGACCTCTTCTCTCAACTTTGAAGCACTCAGGTCCAGTTGCTTCTTCTTCTATGGCTGCGCTAACGTATCTCGGATTTTGCTTCCGGATTCTTGTTGACCTCCTTAGTTGTGCTTATGGAGTTGATACTTCCACTTCACTAGGTCTATCTTCTTCTGGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006521 GO:0008150 GO:0009889 GO:0010364 GO:0010565 GO:0010817 GO:0019222 GO:0031323 GO:0031326 GO:0031335 GO:0032350 GO:0033238 GO:0042762 GO:0046885 GO:0050789 GO:0050794 GO:0051171 GO:0062012 GO:0065007 GO:0065008 GO:0080090 GO:1900908 GO:1900911

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB TPR_7 TPR_8

Protein Analysis

77

Amino Acids

8.16

Weight (kDa)

7.77

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029196)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g12070 pycom02g24450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	150
AclWI	GGATC	2 cut(s)	32, 45
AcsI	RAATTY	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	88
AlwI	GGATC	2 cut(s)	32, 45
Aor13HI	TCCGGA	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	109
BfaI	CTAG	1 cut(s)	206
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	39
BmsI	GCATC	1 cut(s)	73
BsaWI	WCCGGW	1 cut(s)	150
Bse1I	ACTGG	2 cut(s)	39, 101
BseAI	TCCGGA	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	2 cut(s)	39, 101
BseXI	GCAGC	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	151
Bsp13I	TCCGGA	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	37
BspCNI	CTCAG	1 cut(s)	107
BspEI	TCCGGA	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	2 cut(s)	32, 45
BsrI	ACTGG	2 cut(s)	39, 101
BssMI	GATC	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	78
BstDEI	CTNAG	3 cut(s)	22, 94, 170
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	32
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	98
CviJI	RGCY	2 cut(s)	26, 122
CviKI_1	RGCY	2 cut(s)	26, 122
DdeI	CTNAG	3 cut(s)	22, 94, 170
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	98
FaiI	YATR	2 cut(s)	119, 183
Fnu4HI	GCNGC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	123
HapII	CCGG	1 cut(s)	151
HhaI	GCGC	1 cut(s)	127
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	1 cut(s)	154
HpaII	CCGG	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	140
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	131
HpyF3I	CTNAG	3 cut(s)	22, 94, 170
HpySE526I	ACGT	1 cut(s)	131
HspAI	GCGC	1 cut(s)	125
Kpn2I	TCCGGA	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	37
LpnPI	CCDG	5 cut(s)	20, 81, 114, 164, 207
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	131
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	5 cut(s)	65, 102, 105, 207, 210
MflI	RGATCY	1 cut(s)	37
MluCI	AATT	1 cut(s)	44
MnlI	CCTC	2 cut(s)	81, 176
MroI	TCCGGA	1 cut(s)	150
MseI	TTAA	1 cut(s)	59
MspI	CCGG	1 cut(s)	151
NdeII	GATC	1 cut(s)	37
NlaIV	GGNNCC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	98
SetI	ASST	5 cut(s)	73, 100, 134, 168, 211
SfaNI	GCATC	1 cut(s)	73
SgeI	CNNG	8 cut(s)	40, 47, 108, 113, 149, 163, 170, 218
SinI	GGWCC	1 cut(s)	98
Sse9I	AATT	1 cut(s)	44
SspMI	CTAG	1 cut(s)	206
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	1 cut(s)	67
TasI	AATT	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	1 cut(s)	39
TseI	GCWGC	1 cut(s)	122
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	98
XapI	RAATTY	1 cut(s)	44
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.