pycom01g12260

Belongs to the helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0028735
Physical Location & Seq
Forward (+)
13050211 .. 13051073
863 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 651 bp
ATGGTGCTTAAACTCAAAACATCCTGGAGTATTGTTGACATGTTTAAGTGGTGGTTTGTATCAAGCTCACCGTTTAATAAGAGTCCGACCTACAAACTTTGTGAAACGGAACAATGGAATCGCATCATAGATTTCTATGTTTCCCTAAACATATTTAATGAAAAAGTTTTCCAACGTTTACAGGATCTAACATATACTGAATGCAACATCCATCACAAATGTTTCTATATGTTGTTCATTAACTACGTGAGGTGCAACTCCGTCTTCGACTACACTTTTCATCTTTTGTTTGTTTCTGTCAAATTTATAAATGCATGTCTTATATTAATGTCTTATATATCTAGATTAATGGAGGAGCAAGCAATTCGTTTTCTGACGCCATACCAGCCAGCAAACAAACTCCACATCAGGGTATGCAGAATATGGGTCACGAAAAGCATTGGAGATAATCCTCAACCTATAAGTCTTGATTGCGTCTTCGTTGATAAGGATCATTTTTACGTATCCAAATGTGCATGCCATGTTCTCAGTACAACAAACTTTGTAATCAAACATAGACTAAATTCCACAAAGAAACTGATTTATACACTTTGCTACCCAATTATGCATCGCTTACATAATTACCATTTGTCTGATCAATTGTTTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
Helitron_like_N Herpes_Helicase PIF1 REPA_OB_2

Protein Analysis

217

Amino Acids

25.97

Weight (kDa)

9.05

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028735)

Species Orthologous Gene IDs
malus_domestica MD00G1000900.v1.1
pyrus_communis pycom01g12260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 308
AclI AACGTT 1 cut(s) 175
AclWI GGATC 2 cut(s) 192, 498
AcsI RAATTY 2 cut(s) 302, 562
AcyI GRCGYC 1 cut(s) 377
AfaI GTAC 1 cut(s) 532
AfiI CCNNNNNNNGG 1 cut(s) 409
AflIII ACRYGT 1 cut(s) 39
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
AlwI GGATC 2 cut(s) 192, 498
ApoI RAATTY 2 cut(s) 302, 562
AseI ATTAAT 2 cut(s) 326, 347
AsuHPI GGTGA 1 cut(s) 60
BbsI GAAGAC 2 cut(s) 256, 469
BccI CCATC 1 cut(s) 219
BcgI CGANNNNNNTGC 2 cut(s) 347, 381
BciT130I CCWGG 1 cut(s) 25
BciVI GTATCC 1 cut(s) 514
BclI TGATCA 1 cut(s) 634
BfaI CTAG 2 cut(s) 342, 649
BfuI GTATCC 1 cut(s) 514
Bme1390I CCNGG 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 2 cut(s) 132, 616
BpiI GAAGAC 2 cut(s) 256, 469
BpmI CTGGAG 1 cut(s) 46
BsaAI YACGTR 2 cut(s) 247, 502
BsaBI GATNNNNATC 1 cut(s) 489
BsaHI GRCGYC 1 cut(s) 377
Bsc4I CCNNNNNNNGG 1 cut(s) 409
Bse8I GATNNNNATC 1 cut(s) 489
BseBI CCWGG 1 cut(s) 25
BseGI GGATG 2 cut(s) 20, 207
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 1 cut(s) 409
BseMII CTCAG 1 cut(s) 541
BseRI GAGGAG 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 409
BsmI GAATGC 1 cut(s) 206
Bsp143I GATC 3 cut(s) 184, 490, 634
BspCNI CTCAG 1 cut(s) 540
BspPI GGATC 2 cut(s) 192, 498
BssMI GATC 3 cut(s) 184, 490, 634
BssNI GRCGYC 1 cut(s) 377
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 377
BstBAI YACGTR 2 cut(s) 247, 502
BstC8I GCNNGC 3 cut(s) 360, 390, 517
BstDEI CTNAG 1 cut(s) 527
BstF5I GGATG 2 cut(s) 20, 207
BstKTI GATC 3 cut(s) 187, 493, 637
BstMBI GATC 3 cut(s) 184, 490, 634
BstMWI GCNNNNNNNGC 1 cut(s) 385
BstNI CCWGG 1 cut(s) 25
BstNSI RCATGY 3 cut(s) 43, 318, 519
BstSCI CCNGG 1 cut(s) 23
BstSNI TACGTA 1 cut(s) 502
BstV2I GAAGAC 2 cut(s) 256, 469
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BsuI GTATCC 1 cut(s) 514
BtgZI GCGATG 1 cut(s) 593
BtsCI GGATG 2 cut(s) 20, 207
Cac8I GCNNGC 3 cut(s) 360, 390, 517
CseI GACGC 2 cut(s) 385, 463
Csp6I GTAC 1 cut(s) 531
CviAII CATG 4 cut(s) 40, 315, 516, 521
CviJI RGCY 2 cut(s) 66, 388
CviKI_1 RGCY 2 cut(s) 66, 388
CviQI GTAC 1 cut(s) 531
DdeI CTNAG 1 cut(s) 527
DpnI GATC 3 cut(s) 186, 492, 636
DpnII GATC 3 cut(s) 184, 490, 634
Eco105I TACGTA 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 23
EcoT22I ATGCAT 2 cut(s) 316, 609
FaeI CATG 4 cut(s) 43, 318, 519, 524
FatI CATG 4 cut(s) 39, 314, 515, 520
FbaI TGATCA 1 cut(s) 634
FokI GGATG 2 cut(s) 7, 194
FspBI CTAG 2 cut(s) 342, 649
GsuI CTGGAG 1 cut(s) 46
HgaI GACGC 2 cut(s) 385, 463
Hin1I GRCGYC 1 cut(s) 377
Hin1II CATG 4 cut(s) 43, 318, 519, 524
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 2 cut(s) 82, 118
HphI GGTGA 1 cut(s) 60
Hpy166II GTNNAC 2 cut(s) 37, 179
Hpy188I TCNGA 3 cut(s) 87, 375, 634
Hpy188III TCNNGA 3 cut(s) 342, 430, 467
Hpy8I GTNNAC 2 cut(s) 37, 179
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4IV ACGT 3 cut(s) 175, 246, 501
HpyCH4V TGCA 6 cut(s) 204, 255, 314, 417, 515, 607
HpyF10VI GCNNNNNNNGC 1 cut(s) 385
HpyF3I CTNAG 1 cut(s) 527
HpySE526I ACGT 3 cut(s) 175, 246, 501
Hsp92I GRCGYC 1 cut(s) 377
Hsp92II CATG 4 cut(s) 43, 318, 519, 524
Ksp22I TGATCA 1 cut(s) 634
Kzo9I GATC 3 cut(s) 184, 490, 634
LmnI GCTCC 1 cut(s) 355
LpnPI CCDG 6 cut(s) 10, 37, 167, 394, 398, 402
LweI GCATC 2 cut(s) 132, 616
MaeI CTAG 2 cut(s) 342, 649
MaeII ACGT 3 cut(s) 175, 246, 501
MaeIII GTNAC 1 cut(s) 427
MalI GATC 3 cut(s) 186, 492, 636
MboI GATC 3 cut(s) 184, 490, 634
MboII GAAGA 2 cut(s) 256, 469
MfeI CAATTG 1 cut(s) 638
MflI RGATCY 1 cut(s) 184
MluCI AATT 6 cut(s) 302, 363, 562, 600, 619, 638
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 2 cut(s) 110, 196
MnlI CCTC 3 cut(s) 243, 346, 462
Mph1103I ATGCAT 2 cut(s) 316, 609
MseI TTAA 7 cut(s) 9, 45, 75, 156, 240, 326, 347
MspR9I CCNGG 1 cut(s) 25
MunI CAATTG 1 cut(s) 638
Mva1269I GAATGC 1 cut(s) 206
MvaI CCWGG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 385
NdeII GATC 3 cut(s) 184, 490, 634
NlaIII CATG 4 cut(s) 43, 318, 519, 524
NmuCI GTSAC 1 cut(s) 427
NsiI ATGCAT 2 cut(s) 316, 609
NspI RCATGY 3 cut(s) 43, 318, 519
PaeI GCATGC 1 cut(s) 519
PciI ACATGT 1 cut(s) 39
PctI GAATGC 1 cut(s) 206
PfeI GAWTC 1 cut(s) 118
PfoI TCCNGGA 1 cut(s) 23
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
Ppu21I YACGTR 2 cut(s) 247, 502
PscI ACATGT 1 cut(s) 39
PshBI ATTAAT 2 cut(s) 326, 347
PsiI TTATAA 1 cut(s) 308
Psp1406I AACGTT 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
SaqAI TTAA 7 cut(s) 9, 45, 75, 156, 240, 326, 347
Sau3AI GATC 3 cut(s) 184, 490, 634
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 25
SetI ASST 7 cut(s) 68, 92, 178, 249, 254, 460, 504
SfaNI GCATC 2 cut(s) 132, 616
SnaBI TACGTA 1 cut(s) 502
SphI GCATGC 1 cut(s) 519
Sse9I AATT 6 cut(s) 302, 363, 562, 600, 619, 638
SspMI CTAG 2 cut(s) 342, 649
StyD4I CCNGG 1 cut(s) 23
TaaI ACNGT 1 cut(s) 72
TaiI ACGT 3 cut(s) 178, 249, 504
TaqI TCGA 1 cut(s) 267
TasI AATT 6 cut(s) 302, 363, 562, 600, 619, 638
TatI WGTACW 1 cut(s) 530
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 7 cut(s) 9, 45, 75, 156, 240, 326, 347
Tru9I TTAA 7 cut(s) 9, 45, 75, 156, 240, 326, 347
TseFI GTSAC 1 cut(s) 427
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 3 cut(s) 174, 226, 269
TspGWI ACGGA 2 cut(s) 122, 250
VspI ATTAAT 2 cut(s) 326, 347
XapI RAATTY 2 cut(s) 302, 562
XbaI TCTAGA 1 cut(s) 341
XceI RCATGY 3 cut(s) 43, 318, 519
XspI CTAG 2 cut(s) 342, 649
Zsp2I ATGCAT 2 cut(s) 316, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.