Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0028692

Physical Location & Seq

Genomic Coordinates Forward (+)

15982327 .. 15983507

Gene Structure 1181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAGGAAGCTACTACTACATGTGAAAGTGTTTTTAATATTTCCGGGTGATCGGAGCTCCTTTATTGATGTCGGCAATGCGGGGAAACTCGATACGGTGCTTAATGTGGTAGATTCAATGTCGGATGATGATGGGGTTGAATTCTTTAACAATCCAAATAAGAAGAGTATGTTGTTTCTAAAGTTAACTGGTGAGTCTTCTGATGTTTTCAAATCAACATATCGTGAAGTTGCTGAGAAATATAAGAAAGAAGACATAAGCTTTCTCATTGGAGATTTGAAGGTCATAGTCACTGACAACATCCAAGAGTACGTCAAGTTCGGAAAATATGTGTTGCTGGAATTCTATGCTCCTTGGTGTGGACATTGCAAGAAGCTTGTTCCAATTTTGCATGAAGTTACTGTCTCAAATGAAAAGGATTCCGATGTCGTTATTGCAAAATTACGAGGCACTACAAATGGTGTGCCAAGTGACTTCGATGTCAAATATTTCCAGCAACCTCAACGCCCGCAGGACCAGATGATTGGTCACTTGTGTCTAAAGTTAAGAAAGGACTTGGAAGAATTGCAGCAACAAGAACCCCTTGATTCCCTTCTTAAAACCATCTGCTCGAGTATTTCACATTATCTATTTTACTCGCTTATAGATGTGCTCTACTTATTTCGTGGGGTTTCAAATGACTCGTTTTTTCAGTTGGTGTCCGAGATGAAAGCTATAGGAATTACTTCTTTTGCAAAAGCACCAATGGAATTTCTTAGTCCTGTTGAACTTCAACTAAGAATGTCACTTCTCGAGTGGAGAGGAGCAGTGGCAAGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000323 GO:0000325 GO:0000326 GO:0000327 GO:0003006 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005794 GO:0005886 GO:0006457 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010109 GO:0010154 GO:0010205 GO:0010941 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019222 GO:0022414 GO:0030312 GO:0031090 GO:0031323 GO:0031324 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034975 GO:0034976 GO:0042221 GO:0042548 GO:0043067 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043467 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0071944 GO:0098588 GO:0098805 GO:0140096 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

274

Amino Acids

31.11

Weight (kDa)

5.8

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	95 - 164	6.1e-12	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028692)

Species	Orthologous Gene IDs
malus_domestica	MD04G1082100.v1.1
pyrus_communis	pycom01g16400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	479
AciI	CCGC	2 cut(s)	80, 509
AcsI	RAATTY	3 cut(s)	140, 341, 749
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	359
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	7 cut(s)	117, 140, 211, 280, 675, 767, 773
AluBI	AGCT	5 cut(s)	10, 57, 261, 376, 713
AluI	AGCT	5 cut(s)	10, 57, 261, 376, 713
Alw21I	GWGCWC	2 cut(s)	59, 654
Alw26I	GTCTC	1 cut(s)	409
Ama87I	CYCGRG	2 cut(s)	610, 791
ApeKI	GCWGC	1 cut(s)	568
ApoI	RAATTY	3 cut(s)	140, 341, 749
Asp700I	GAANNNNTTC	1 cut(s)	724
AspS9I	GGNCC	1 cut(s)	514
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	2 cut(s)	59, 203
AvaI	CYCGRG	2 cut(s)	610, 791
AvaII	GGWCC	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	59
BbsI	GAAGAC	2 cut(s)	189, 258
Bbv12I	GWGCWC	2 cut(s)	59, 654
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	2 cut(s)	125, 611
BcnI	CCSGG	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	409
BfmI	CTRYAG	1 cut(s)	714
BisI	GCNGC	1 cut(s)	569
BlsI	GCNGC	1 cut(s)	570
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	514
BmeT110I	CYCGRG	2 cut(s)	610, 791
BmgT120I	GGNCC	1 cut(s)	514
BmrFI	CCNGG	1 cut(s)	45
BpiI	GAAGAC	2 cut(s)	189, 258
BpuMI	CCSGG	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	2 cut(s)	82, 364
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	2 cut(s)	130, 300
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMI	GCAATG	2 cut(s)	82, 364
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	816
BseXI	GCAGC	1 cut(s)	580
BsiHKAI	GWGCWC	2 cut(s)	59, 654
BsiHKCI	CYCGRG	2 cut(s)	610, 791
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmAI	GTCTC	1 cut(s)	409
BsoBI	CYCGRG	2 cut(s)	610, 791
Bsp1286I	GDGCHC	2 cut(s)	59, 654
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	2 cut(s)	80, 509
BspCNI	CTCAG	1 cut(s)	226
BsrDI	GCAATG	2 cut(s)	82, 364
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	353
Bst4CI	ACNGT	2 cut(s)	97, 403
Bst6I	CTCTTC	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	509
BstDEI	CTNAG	3 cut(s)	234, 755, 776
BstF5I	GGATG	2 cut(s)	130, 300
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	714
BstV1I	GCAGC	1 cut(s)	580
BstV2I	GAAGAC	2 cut(s)	189, 258
BstXI	CCANNNNNNTGG	1 cut(s)	524
BtsCI	GGATG	2 cut(s)	130, 300
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	2 cut(s)	291, 813
Cac8I	GCNNGC	1 cut(s)	509
Cfr13I	GGNCC	1 cut(s)	514
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	2 cut(s)	20, 392
CviJI	RGCY	5 cut(s)	10, 57, 261, 376, 713
CviKI_1	RGCY	5 cut(s)	10, 57, 261, 376, 713
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	3 cut(s)	234, 755, 776
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
DrdI	GACNNNNNNGTC	1 cut(s)	479
DseDI	GACNNNNNNGTC	1 cut(s)	479
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Ecl136II	GAGCTC	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	353
Eco24I	GRGCYC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	514
Eco53kI	GAGCTC	1 cut(s)	57
Eco88I	CYCGRG	2 cut(s)	610, 791
EcoICRI	GAGCTC	1 cut(s)	57
EcoRI	GAATTC	2 cut(s)	140, 341
EcoT14I	CCWWGG	1 cut(s)	353
EcoT38I	GRGCYC	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	2 cut(s)	23, 395
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FatI	CATG	2 cut(s)	19, 391
FauI	CCCGC	2 cut(s)	73, 516
Fnu4HI	GCNGC	1 cut(s)	569
FokI	GGATG	2 cut(s)	137, 287
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	569
GluI	GCNGC	1 cut(s)	569
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	2 cut(s)	23, 395
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HindIII	AAGCTT	2 cut(s)	259, 374
HinfI	GANTC	5 cut(s)	113, 194, 419, 587, 680
HpaI	GTTAAC	1 cut(s)	186
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	2 cut(s)	59, 203
Hpy166II	GTNNAC	2 cut(s)	186, 362
Hpy188I	TCNGA	6 cut(s)	54, 124, 202, 323, 424, 703
Hpy188III	TCNNGA	2 cut(s)	224, 791
Hpy8I	GTNNAC	2 cut(s)	186, 362
HpyAV	CCTTC	2 cut(s)	274, 602
HpyCH4III	ACNGT	2 cut(s)	97, 403
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	5 cut(s)	369, 391, 437, 568, 734
HpyF3I	CTNAG	3 cut(s)	234, 755, 776
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	2 cut(s)	23, 395
KspAI	GTTAAC	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	4 cut(s)	54, 62, 355, 803
LpnPI	CCDG	7 cut(s)	57, 174, 323, 497, 506, 530, 774
Lsp1109I	GCAGC	1 cut(s)	580
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	5 cut(s)	289, 397, 470, 527, 783
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	4 cut(s)	175, 189, 263, 572
MhlI	GDGCHC	2 cut(s)	59, 654
MluCI	AATT	7 cut(s)	140, 341, 384, 440, 563, 720, 749
MlyI	GAGTC	2 cut(s)	203, 674
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	3 cut(s)	440, 510, 794
MroXI	GAANNNNTTC	1 cut(s)	724
MseI	TTAA	6 cut(s)	35, 102, 147, 185, 545, 597
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	45
NciI	CCSGG	1 cut(s)	45
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	2 cut(s)	23, 395
NmuCI	GTSAC	4 cut(s)	289, 470, 527, 783
NspI	RCATGY	1 cut(s)	23
PaeR7I	CTCGAG	2 cut(s)	610, 791
PciI	ACATGT	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	724
PfeI	GAWTC	3 cut(s)	113, 419, 587
PkrI	GCNGC	1 cut(s)	570
PleI	GAGTC	2 cut(s)	202, 674
PpsI	GAGTC	2 cut(s)	202, 674
PscI	ACATGT	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	59
PspPI	GGNCC	1 cut(s)	514
PspXI	VCTCGAGB	1 cut(s)	610
PsrI	GAACNNNNNNTAC	2 cut(s)	302, 334
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SacI	GAGCTC	1 cut(s)	59
SaqAI	TTAA	6 cut(s)	35, 102, 147, 185, 545, 597
SatI	GCNGC	1 cut(s)	569
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	1 cut(s)	514
SchI	GAGTC	2 cut(s)	203, 674
ScrFI	CCNGG	1 cut(s)	45
SduI	GDGCHC	2 cut(s)	59, 654
SetI	ASST	8 cut(s)	12, 59, 263, 285, 315, 378, 502, 715
SfcI	CTRYAG	1 cut(s)	714
Sfr274I	CTCGAG	2 cut(s)	610, 791
SinI	GGWCC	1 cut(s)	514
SlaI	CTCGAG	2 cut(s)	610, 791
SmlI	CTYRAG	2 cut(s)	610, 791
SmoI	CTYRAG	2 cut(s)	610, 791
Sse9I	AATT	7 cut(s)	140, 341, 384, 440, 563, 720, 749
SsiI	CCGC	2 cut(s)	80, 509
SspI	AATATT	2 cut(s)	39, 488
SstI	GAGCTC	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	2 cut(s)	97, 403
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	4 cut(s)	90, 477, 611, 792
TasI	AATT	7 cut(s)	140, 341, 384, 440, 563, 720, 749
TfiI	GAWTC	3 cut(s)	113, 419, 587
Tru1I	TTAA	6 cut(s)	35, 102, 147, 185, 545, 597
Tru9I	TTAA	6 cut(s)	35, 102, 147, 185, 545, 597
TscAI	CASTG	2 cut(s)	298, 813
TseFI	GTSAC	4 cut(s)	289, 470, 527, 783
TseI	GCWGC	1 cut(s)	568
Tsp45I	GTSAC	4 cut(s)	289, 470, 527, 783
TspDTI	ATGAA	3 cut(s)	408, 426, 722
TspRI	CASTG	2 cut(s)	298, 813
VpaK11BI	GGWCC	1 cut(s)	514
XapI	RAATTY	3 cut(s)	140, 341, 749
XceI	RCATGY	1 cut(s)	23
XhoI	CTCGAG	2 cut(s)	610, 791
XmnI	GAANNNNTTC	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.